Wall clock time and date at job start Tue Mar 31 2020 07:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50708 * 119.99549 * 2 1 4 4 C 1.53004 * 109.46800 * 124.99948 * 3 2 1 5 5 O 1.42907 * 109.46878 * 179.97438 * 4 3 2 6 6 N 1.41593 * 113.99906 * 179.97438 * 5 4 3 7 7 C 1.34775 * 120.00091 * 180.02562 * 6 5 4 8 8 O 1.21287 * 119.99798 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00246 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.46992 * 180.02562 * 9 7 6 11 11 C 1.38299 * 119.93247 * 90.00201 * 10 9 7 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47375 * 119.99795 * 19 17 15 22 22 H 1.48506 * 109.47301 * 239.99793 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.07991 * 120.00177 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99372 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.00566 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47337 * 5.00124 * 3 2 1 29 29 H 1.09001 * 109.46859 * 244.99632 * 3 2 1 30 30 H 1.08998 * 109.47470 * 59.99889 * 4 3 2 31 31 H 1.09001 * 109.47156 * 299.99502 * 4 3 2 32 32 H 0.97005 * 120.00305 * 0.02562 * 6 5 4 33 33 H 1.08998 * 109.46621 * 60.00483 * 9 7 6 34 34 H 1.08996 * 109.47266 * 300.00146 * 9 7 6 35 35 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 36 36 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 37 37 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 38 38 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 39 39 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 8 3.7498 2.5706 1.1814 6 7 4.6799 2.6987 2.2413 7 6 5.4200 3.8191 2.3567 8 8 5.2889 4.7179 1.5530 9 6 6.4103 3.9552 3.4845 10 6 7.1017 5.2906 3.3874 11 6 6.5679 6.3925 4.0306 12 6 7.1994 7.6176 3.9440 13 6 8.3715 7.7426 3.2095 14 8 8.9949 8.9454 3.1230 15 6 8.4898 9.9514 3.8651 16 1 7.5801 9.8033 4.4278 17 6 9.1385 11.1762 3.9056 18 7 10.2470 11.3566 3.2205 19 14 8.4392 12.5698 4.9343 20 1 7.1947 12.1143 5.6043 21 1 9.4337 12.9756 5.9596 22 1 8.1328 13.7277 4.0564 23 6 8.9017 6.6357 2.5596 24 6 8.2685 5.4121 2.6547 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8500 -0.9352 0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6212 1.4027 -0.9314 30 1 3.7399 0.5067 1.0922 31 1 2.4771 1.2357 2.1131 32 1 4.7845 1.9800 2.8843 33 1 7.1496 3.1571 3.4170 34 1 5.8869 3.8859 4.4381 35 1 5.6567 6.2946 4.6020 36 1 6.7823 8.4775 4.4469 37 1 10.7005 12.2135 3.2485 38 1 9.8105 6.7307 1.9840 39 1 8.6826 4.5500 2.1532 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856032456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:17 Heat of formation + Delta-G solvation = -41.218615 kcal Electronic energy + Delta-G solvation = -21415.055816 eV Core-core repulsion = 17904.279388 eV Total energy + Delta-G solvation = -3510.776428 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.02417 -40.30702 -38.72018 -38.00211 -36.01507 -34.40490 -33.67170 -32.36412 -31.75674 -29.96294 -28.04348 -26.88221 -24.18548 -23.62602 -22.84124 -21.45546 -20.70904 -19.84183 -19.16995 -18.75835 -17.96377 -17.14128 -16.54686 -16.41984 -16.09547 -15.93673 -15.62338 -15.51837 -15.39236 -14.99061 -14.65374 -14.40330 -14.24132 -14.03550 -13.60187 -13.24341 -12.99480 -12.86415 -12.71993 -12.47550 -12.28782 -12.25273 -12.08926 -12.02903 -11.76525 -11.16530 -11.04711 -10.77671 -10.31245 -9.90989 -9.74445 -8.90550 -8.46974 -6.15028 0.53704 0.63653 1.00393 1.34587 1.40678 1.44778 1.53463 1.68922 2.18124 2.82200 3.15716 3.51450 3.53601 3.78074 3.90851 4.01741 4.07331 4.14881 4.19334 4.23188 4.39036 4.39323 4.50064 4.61273 4.71156 4.80252 4.82234 4.96482 5.06691 5.10119 5.15942 5.31905 5.57507 5.69714 5.72944 5.77899 5.79243 5.84990 6.03836 6.23782 6.43401 6.97626 7.38407 7.79170 8.76718 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.033634 B = 0.002311 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.283032 B =12114.502960 C =12475.888650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.159 4.159 3 C -0.089 4.089 4 C 0.035 3.965 5 O -0.186 6.186 6 N -0.586 5.586 7 C 0.519 3.481 8 O -0.573 6.573 9 C -0.059 4.059 10 C -0.151 4.151 11 C -0.058 4.058 12 C -0.246 4.246 13 C 0.113 3.887 14 O -0.234 6.234 15 C -0.413 4.413 16 H 0.101 0.899 17 C -0.025 4.025 18 N -0.921 5.921 19 Si 1.021 2.979 20 H -0.252 1.252 21 H -0.265 1.265 22 H -0.270 1.270 23 C -0.209 4.209 24 C -0.055 4.055 25 H 0.095 0.905 26 H 0.115 0.885 27 H 0.128 0.872 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.428 0.572 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.117 0.883 37 H 0.273 0.727 38 H 0.112 0.888 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.947 -26.284 1.934 30.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.177 4.177 3 C -0.128 4.128 4 C -0.041 4.041 5 O -0.191 6.191 6 N -0.291 5.291 7 C 0.307 3.693 8 O -0.450 6.450 9 C -0.098 4.098 10 C -0.152 4.152 11 C -0.076 4.076 12 C -0.266 4.266 13 C 0.063 3.937 14 O -0.141 6.141 15 C -0.490 4.490 16 H 0.118 0.882 17 C -0.222 4.222 18 N -0.560 5.560 19 Si 0.840 3.160 20 H -0.175 1.175 21 H -0.190 1.190 22 H -0.195 1.195 23 C -0.228 4.228 24 C -0.073 4.073 25 H 0.113 0.887 26 H 0.133 0.867 27 H 0.146 0.854 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.272 0.728 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.135 0.865 37 H 0.082 0.918 38 H 0.130 0.870 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.740 -25.284 1.049 29.801 hybrid contribution -0.105 0.648 0.207 0.689 sum -15.845 -24.635 1.256 29.318 Atomic orbital electron populations 1.24113 0.95955 1.02844 0.99280 1.22761 0.96064 0.97391 1.01449 1.20600 0.97486 0.97096 0.97597 1.23125 0.94719 0.85909 1.00371 1.90595 1.50995 1.39493 1.37985 1.47568 1.36231 1.20761 1.24556 1.21722 0.80570 0.79923 0.87048 1.90780 1.67939 1.41304 1.44964 1.20473 0.96640 0.96017 0.96704 1.19210 0.97269 0.95469 1.03235 1.20980 0.98145 0.91025 0.97423 1.21238 0.98380 0.99796 1.07148 1.19975 0.92464 0.86588 0.94677 1.83936 1.52840 1.16131 1.61163 1.21875 1.10060 0.90267 1.26759 0.88177 1.26631 0.96013 1.00660 0.98927 1.70195 1.18367 1.25826 1.41589 0.84502 0.78564 0.75765 0.77172 1.17503 1.19024 1.19462 1.20457 1.03435 0.92042 1.06857 1.20926 0.94545 0.95806 0.95992 0.88668 0.86671 0.85435 0.91337 0.90439 0.89993 0.90574 0.72808 0.83835 0.84132 0.84087 0.86493 0.91840 0.86958 0.83211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.63 14.32 67.78 0.97 -0.65 16 2 C -0.16 -1.46 9.52 25.65 0.24 -1.21 16 3 C -0.09 -1.15 6.03 29.85 0.18 -0.97 16 4 C 0.04 0.44 6.21 71.98 0.45 0.89 16 5 O -0.19 -4.25 11.11 -21.37 -0.24 -4.49 16 6 N -0.59 -10.66 6.39 -173.52 -1.11 -11.76 16 7 C 0.52 13.26 7.97 87.66 0.70 13.96 16 8 O -0.57 -22.76 16.44 14.35 0.24 -22.53 16 9 C -0.06 -1.08 5.83 29.10 0.17 -0.91 16 10 C -0.15 -4.72 4.38 -19.84 -0.09 -4.81 16 11 C -0.06 -2.08 9.69 22.25 0.22 -1.87 16 12 C -0.25 -11.40 9.17 22.39 0.21 -11.20 16 13 C 0.11 5.98 6.65 22.58 0.15 6.13 16 14 O -0.23 -14.77 9.76 -22.72 -0.22 -14.99 16 15 C -0.41 -25.08 9.49 67.92 0.64 -24.44 16 16 H 0.10 5.61 5.20 -2.91 -0.02 5.59 16 17 C -0.03 -1.48 5.49 84.84 0.47 -1.01 16 18 N -0.92 -58.21 13.67 21.62 0.30 -57.91 16 19 Si 1.02 44.27 29.55 68.60 2.03 46.30 16 20 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 21 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 C -0.21 -9.45 9.99 22.39 0.22 -9.22 16 24 C -0.05 -1.92 9.69 22.25 0.22 -1.70 16 25 H 0.09 0.89 7.84 -2.91 -0.02 0.87 16 26 H 0.12 0.67 8.06 -2.91 -0.02 0.65 16 27 H 0.13 0.77 8.06 -2.91 -0.02 0.74 16 28 H 0.07 1.02 7.79 -2.39 -0.02 1.00 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.43 3.24 8.54 -92.70 -0.79 2.44 16 33 H 0.14 1.46 8.08 -2.39 -0.02 1.44 16 34 H 0.14 1.51 8.08 -2.39 -0.02 1.49 16 35 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 36 H 0.12 5.50 5.64 -2.91 -0.02 5.48 16 37 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 38 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 39 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -88.48 346.87 6.01 -82.48 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.27 Total: 19.92 kcal Atomic # 6 Polarization: -41.76 SS G_CDS: 4.74 Total: -37.02 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -0.81 Total: -69.67 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -0.22 Total: -42.01 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -88.48 6.01 -82.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856032456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.260 kcal (2) G-P(sol) polarization free energy of solvation -88.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds