Wall clock time and date at job start Tue Mar 31 2020 06:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99634 * 2 1 4 4 C 1.52994 * 115.55457 * 325.58505 * 3 2 1 5 5 C 1.53006 * 117.51625 * 111.28482 * 3 2 1 6 6 C 1.53001 * 117.49604 * 179.91173 * 3 2 1 7 7 H 1.08995 * 117.50060 * 144.97567 * 6 3 2 8 8 N 1.46502 * 117.50023 * 359.97438 * 6 3 2 9 9 C 1.34776 * 120.00128 * 154.99708 * 8 6 3 10 10 O 1.21597 * 119.99715 * 0.02562 * 9 8 6 11 11 C 1.47532 * 119.99828 * 180.02562 * 9 8 6 12 12 C 1.39661 * 120.19925 * 0.02562 * 11 9 8 13 13 C 1.37834 * 119.91809 * 180.02562 * 12 11 9 14 14 C 1.38570 * 120.32490 * 359.97438 * 13 12 11 15 15 C 1.38027 * 120.40032 * 359.97438 * 14 13 12 16 16 C 1.38843 * 120.07377 * 359.76225 * 15 14 13 17 17 O 1.35520 * 120.16098 * 180.25659 * 16 15 14 18 18 C 1.34816 * 117.00026 * 354.40227 * 17 16 15 19 19 H 1.07998 * 119.99639 * 5.06145 * 18 17 16 20 20 C 1.38698 * 119.99749 * 185.06479 * 18 17 16 21 21 N 1.31524 * 120.00035 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99897 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47158 * 89.99889 * 22 20 18 24 24 H 1.48504 * 109.47060 * 210.00101 * 22 20 18 25 25 H 1.48503 * 109.46949 * 329.99610 * 22 20 18 26 26 H 1.09007 * 109.47272 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47445 * 299.99764 * 1 2 3 28 28 H 1.08999 * 109.47324 * 59.99977 * 1 2 3 29 29 H 1.09000 * 109.46743 * 274.33163 * 4 3 2 30 30 H 1.08999 * 109.47430 * 154.32859 * 4 3 2 31 31 H 1.09001 * 109.47219 * 34.33026 * 4 3 2 32 32 H 1.09002 * 117.49996 * 214.96716 * 5 3 2 33 33 H 1.08999 * 117.50032 * 359.97438 * 5 3 2 34 34 H 0.97002 * 120.00218 * 335.00563 * 8 6 3 35 35 H 1.07999 * 120.04007 * 359.97438 * 12 11 9 36 36 H 1.07992 * 119.83556 * 180.02562 * 13 12 11 37 37 H 1.07996 * 119.80076 * 180.02562 * 14 13 12 38 38 H 1.08003 * 119.96443 * 180.02562 * 15 14 13 39 39 H 0.96993 * 119.99632 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.2383 2.3715 -0.7801 5 6 2.7477 1.7509 1.2644 6 6 3.5373 1.3988 0.0021 7 1 3.9921 2.2195 -0.5526 8 7 4.2919 0.1431 0.0045 9 6 5.5464 0.1097 -0.4870 10 8 6.0521 1.1220 -0.9320 11 6 6.3059 -1.1551 -0.4850 12 6 5.7289 -2.3203 0.0246 13 6 6.4440 -3.4986 0.0241 14 6 7.7340 -3.5339 -0.4805 15 6 8.3169 -2.3904 -0.9884 16 6 7.6097 -1.1957 -1.0010 17 8 8.1783 -0.0731 -1.5040 18 6 9.4732 -0.1543 -1.8703 19 1 9.9861 -1.1041 -1.8339 20 6 10.1466 0.9819 -2.2938 21 7 9.5218 2.1383 -2.3385 22 14 11.9406 0.8693 -2.8021 23 1 12.0259 0.5789 -4.2559 24 1 12.6185 2.1588 -2.5141 25 1 12.6036 -0.2194 -2.0400 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.5304 2.3363 -1.8296 30 1 1.4660 3.3563 -0.3723 31 1 0.1685 2.1812 -0.6942 32 1 2.6829 2.8034 1.5404 33 1 2.7893 1.0483 2.0967 34 1 3.8885 -0.6644 0.3598 35 1 4.7239 -2.2979 0.4194 36 1 5.9963 -4.3989 0.4181 37 1 8.2865 -4.4619 -0.4771 38 1 9.3227 -2.4260 -1.3803 39 1 9.9929 2.9329 -2.6343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856268444.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:36 Heat of formation + Delta-G solvation = -40.921391 kcal Electronic energy + Delta-G solvation = -22940.357012 eV Core-core repulsion = 19429.593472 eV Total energy + Delta-G solvation = -3510.763540 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.81011 -39.07779 -37.71180 -36.30227 -35.35088 -32.56856 -32.29366 -30.27676 -28.89180 -28.55900 -26.69283 -25.37167 -23.53196 -21.94749 -21.12440 -20.36781 -19.84000 -18.03096 -17.61922 -16.81223 -16.20726 -15.42083 -15.32445 -14.80061 -14.52488 -14.29167 -14.17843 -13.92533 -13.81935 -13.52691 -13.28625 -13.18227 -12.67479 -12.46751 -12.27018 -11.90783 -11.69143 -11.48810 -11.37470 -11.15533 -11.07999 -10.88201 -10.77235 -10.69675 -10.44054 -9.54822 -9.25784 -8.85680 -8.83341 -8.32373 -8.18706 -7.27813 -6.42082 -4.01921 1.74173 2.35567 3.13430 3.14575 3.19210 3.31821 3.53859 3.75220 3.95435 3.97602 4.62074 4.74349 4.79253 4.93710 5.10582 5.16461 5.20906 5.21378 5.38978 5.42990 5.56048 5.57582 5.61009 5.63013 5.73551 5.76790 5.90834 5.99228 6.15725 6.22363 6.60300 6.72149 6.92293 6.95202 7.09858 7.16447 7.27219 7.32409 7.72741 7.94883 8.17870 8.97583 9.11492 9.70354 10.71850 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.004307 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.834032 B = 6499.519939 C = 7811.155457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.022 3.978 4 C -0.143 4.143 5 C -0.211 4.211 6 C 0.124 3.876 7 H 0.144 0.856 8 N -0.708 5.708 9 C 0.558 3.442 10 O -0.501 6.501 11 C -0.226 4.226 12 C -0.037 4.037 13 C -0.230 4.230 14 C -0.050 4.050 15 C -0.238 4.238 16 C 0.190 3.810 17 O -0.124 6.124 18 C -0.404 4.404 19 H 0.094 0.906 20 C 0.045 3.955 21 N -0.833 5.833 22 Si 0.941 3.059 23 H -0.272 1.272 24 H -0.276 1.276 25 H -0.266 1.266 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.400 0.600 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.329 -4.181 5.292 15.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.267 6.267 3 C -0.020 4.020 4 C -0.201 4.201 5 C -0.250 4.250 6 C 0.017 3.983 7 H 0.161 0.839 8 N -0.361 5.361 9 C 0.348 3.652 10 O -0.375 6.375 11 C -0.231 4.231 12 C -0.055 4.055 13 C -0.249 4.249 14 C -0.069 4.069 15 C -0.257 4.257 16 C 0.131 3.869 17 O -0.022 6.022 18 C -0.480 4.480 19 H 0.111 0.889 20 C -0.163 4.163 21 N -0.464 5.464 22 Si 0.765 3.235 23 H -0.198 1.198 24 H -0.201 1.201 25 H -0.191 1.191 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.235 0.765 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.816 -3.080 4.814 14.951 hybrid contribution 0.394 -0.457 0.073 0.608 sum -13.421 -3.537 4.887 14.715 Atomic orbital electron populations 1.22790 0.81306 1.02564 1.00131 1.87884 1.19672 1.24720 1.94393 1.22573 0.93726 0.85454 1.00213 1.21798 1.00035 0.97384 1.00836 1.24256 1.04620 1.02589 0.93544 1.21903 0.86454 0.90561 0.99430 0.83897 1.45206 1.15106 1.10397 1.65384 1.18266 0.80300 0.89063 0.77571 1.90936 1.67849 1.34609 1.44133 1.18799 0.95283 0.93810 1.15231 1.20792 0.97702 0.91734 0.95312 1.20463 0.96332 0.97531 1.10621 1.20898 0.94483 0.96906 0.94609 1.21154 1.02220 0.92688 1.09682 1.19266 0.90947 0.87397 0.89322 1.84174 1.25618 1.28335 1.64101 1.21501 0.84284 0.96676 1.45504 0.88875 1.25379 1.00172 0.94181 0.96564 1.70131 1.36721 0.99025 1.40571 0.85730 0.80322 0.78340 0.79123 1.19765 1.20147 1.19068 0.89635 0.94015 0.93477 0.91016 0.90797 0.91283 0.87792 0.88111 0.76494 0.86957 0.87251 0.87173 0.85058 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.05 101.05 1.02 1.27 16 2 O -0.35 -4.42 10.39 -35.23 -0.37 -4.79 16 3 C 0.02 0.27 3.03 -90.62 -0.27 0.00 16 4 C -0.14 -1.41 9.50 37.15 0.35 -1.06 16 5 C -0.21 -2.59 10.05 -26.73 -0.27 -2.86 16 6 C 0.12 1.95 6.15 -67.93 -0.42 1.53 16 7 H 0.14 2.47 7.40 -51.93 -0.38 2.09 16 8 N -0.71 -12.58 5.42 -54.85 -0.30 -12.88 16 9 C 0.56 12.76 7.76 -12.47 -0.10 12.66 16 10 O -0.50 -13.94 14.73 -16.57 -0.24 -14.19 16 11 C -0.23 -5.09 5.89 -104.81 -0.62 -5.71 16 12 C -0.04 -0.66 9.54 -39.20 -0.37 -1.03 16 13 C -0.23 -3.91 10.03 -39.61 -0.40 -4.31 16 14 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 15 C -0.24 -5.21 9.16 -39.44 -0.36 -5.57 16 16 C 0.19 4.82 6.66 -38.59 -0.26 4.57 16 17 O -0.12 -3.71 7.84 -21.06 -0.17 -3.88 16 18 C -0.40 -11.55 9.49 30.90 0.29 -11.25 16 19 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 20 C 0.04 1.26 5.49 -17.51 -0.10 1.16 16 21 N -0.83 -25.26 13.67 55.48 0.76 -24.50 16 22 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 26 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.37 6.47 -51.93 -0.34 0.04 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.64 7.90 -51.93 -0.41 0.23 16 31 H 0.07 0.55 5.78 -51.93 -0.30 0.25 16 32 H 0.10 1.09 8.05 -51.93 -0.42 0.67 16 33 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.40 6.19 6.42 -40.82 -0.26 5.93 16 35 H 0.11 1.64 6.40 -52.49 -0.34 1.31 16 36 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.13 2.82 5.64 -52.48 -0.30 2.52 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -34.88 331.99 -6.92 -41.80 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -4.69 Total: 9.70 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -1.89 Total: -11.91 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.46 Total: -37.38 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.78 Total: -22.85 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.88 -6.92 -41.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856268444.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.876 kcal (2) G-P(sol) polarization free energy of solvation -34.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds