Wall clock time and date at job start Tue Mar 31 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.62994 * 2 1 4 4 N 1.46494 * 109.47158 * 180.30371 * 3 2 1 5 5 C 1.34785 * 120.00176 * 179.97438 * 4 3 2 6 6 O 1.21612 * 119.99513 * 0.02562 * 5 4 3 7 7 C 1.47426 * 120.00056 * 180.02562 * 5 4 3 8 8 C 1.39227 * 120.28485 * 5.54019 * 7 5 4 9 9 C 1.38217 * 120.09216 * 179.97438 * 8 7 5 10 10 C 1.38824 * 120.67796 * 0.02760 * 9 8 7 11 11 C 1.37601 * 120.56925 * 359.97212 * 10 9 8 12 12 C 1.40699 * 119.88020 * 0.02562 * 11 10 9 13 13 C 1.40893 * 120.32716 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00136 * 213.40009 * 13 12 11 15 15 C 1.40279 * 119.99632 * 33.40612 * 13 12 11 16 16 N 1.30621 * 120.00214 * 8.70630 * 15 13 12 17 17 Si 1.86795 * 119.99676 * 188.70956 * 15 13 12 18 18 H 1.48501 * 109.47544 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47348 * 119.99848 * 17 15 13 20 20 H 1.48496 * 109.47108 * 239.99773 * 17 15 13 21 21 O 1.43751 * 109.50546 * 120.31386 * 2 1 3 22 22 C 1.44794 * 104.81159 * 95.49450 * 21 2 1 23 23 C 1.54912 * 101.72215 * 36.10119 * 22 21 2 24 24 O 1.43365 * 109.63103 * 239.60799 * 2 1 3 25 25 H 1.09011 * 109.46477 * 59.99839 * 1 2 3 26 26 H 1.08994 * 109.47430 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47388 * 300.00440 * 1 2 3 28 28 H 1.08998 * 109.46791 * 60.30294 * 3 2 1 29 29 H 1.09001 * 109.46868 * 300.30614 * 3 2 1 30 30 H 0.97001 * 119.99990 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.95056 * 0.25474 * 8 7 5 32 32 H 1.08001 * 119.66315 * 179.97438 * 9 8 7 33 33 H 1.08005 * 119.71882 * 179.97438 * 10 9 8 34 34 H 1.08000 * 120.05469 * 180.02562 * 11 10 9 35 35 H 0.97001 * 120.00080 * 179.97438 * 16 15 13 36 36 H 1.08994 * 110.97648 * 277.99488 * 22 21 2 37 37 H 1.08995 * 110.97503 * 154.21192 * 22 21 2 38 38 H 1.08997 * 110.69861 * 206.04243 * 23 22 21 39 39 H 1.09003 * 110.69694 * 82.83557 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 7 3.5089 1.4370 -0.0073 5 6 4.1861 2.6024 -0.0091 6 8 3.5809 3.6573 -0.0042 7 6 5.6603 2.5983 -0.0171 8 6 6.3585 1.3999 -0.1388 9 6 7.7406 1.4008 -0.1463 10 6 8.4488 2.5893 -0.0327 11 6 7.7869 3.7895 0.0889 12 6 6.3802 3.8162 0.0993 13 6 5.6927 5.0397 0.2239 14 1 4.7505 5.0786 0.7503 15 6 6.2322 6.2074 -0.3358 16 7 7.2784 6.1355 -1.1145 17 14 5.4543 7.8653 0.0326 18 1 4.2895 7.6763 0.9342 19 1 6.4528 8.7452 0.6912 20 1 5.0017 8.4923 -1.2351 21 8 2.0100 -0.6839 1.1697 22 6 2.2599 -2.0403 0.7290 23 6 2.7855 -1.8118 -0.7102 24 8 2.0117 -0.6831 -1.1648 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6865 1.9543 0.8927 29 1 1.6776 1.9575 -0.8872 30 1 3.9916 0.5957 -0.0116 31 1 5.8192 0.4688 -0.2320 32 1 8.2752 0.4671 -0.2406 33 1 9.5287 2.5720 -0.0400 34 1 8.3461 4.7093 0.1764 35 1 7.6512 6.9429 -1.5018 36 1 1.3393 -2.6236 0.7202 37 1 3.0174 -2.5189 1.3497 38 1 2.5948 -2.6856 -1.3332 39 1 3.8484 -1.5704 -0.6984 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866876109.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:22 Heat of formation + Delta-G solvation = -103.475379 kcal Electronic energy + Delta-G solvation = -23514.675589 eV Core-core repulsion = 20001.199505 eV Total energy + Delta-G solvation = -3513.476084 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.79329 -38.72240 -36.72532 -35.12804 -34.24981 -33.59151 -31.94930 -29.93471 -29.46801 -28.66975 -26.32233 -25.09073 -23.42323 -22.10728 -21.29452 -20.71753 -19.32839 -17.75206 -17.36450 -16.79041 -16.22709 -15.58418 -15.32604 -15.14496 -14.39746 -14.20809 -14.13839 -13.83669 -13.34983 -13.17060 -13.07596 -12.95407 -12.68147 -12.37313 -12.24459 -12.17424 -12.02521 -11.50986 -11.48202 -11.09961 -10.94037 -10.63389 -10.49589 -10.34256 -10.02966 -9.82221 -9.62257 -9.25112 -8.38494 -8.28207 -7.54762 -7.32484 -6.76105 -4.34925 2.40266 2.83314 3.13291 3.22599 3.23233 3.25439 3.75934 3.93161 4.01410 4.22458 4.37057 4.59908 4.72292 4.73546 4.95635 4.99999 5.17075 5.40766 5.45766 5.57928 5.65178 5.69445 5.81364 5.87878 5.94733 6.01333 6.23007 6.32786 6.65015 6.96319 6.99537 7.11654 7.19301 7.26985 7.50047 7.66183 7.92670 8.02384 8.21867 8.43333 8.70958 8.86696 8.94162 9.45961 10.18754 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019360 B = 0.004799 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.944503 B = 5833.240604 C = 6993.136915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.244 3.756 3 C 0.126 3.874 4 N -0.739 5.739 5 C 0.565 3.435 6 O -0.540 6.540 7 C -0.260 4.260 8 C -0.056 4.056 9 C -0.247 4.247 10 C -0.096 4.096 11 C -0.148 4.148 12 C 0.145 3.855 13 C -0.415 4.415 14 H 0.106 0.894 15 C 0.068 3.932 16 N -0.793 5.793 17 Si 0.917 3.083 18 H -0.257 1.257 19 H -0.274 1.274 20 H -0.274 1.274 21 O -0.364 6.364 22 C 0.014 3.986 23 C 0.017 3.983 24 O -0.372 6.372 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.391 0.609 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.281 0.719 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.996 -13.197 1.663 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.167 3.833 3 C 0.001 3.999 4 N -0.394 5.394 5 C 0.359 3.641 6 O -0.418 6.418 7 C -0.265 4.265 8 C -0.075 4.075 9 C -0.266 4.266 10 C -0.115 4.115 11 C -0.167 4.167 12 C 0.141 3.859 13 C -0.443 4.443 14 H 0.124 0.876 15 C -0.150 4.150 16 N -0.419 5.419 17 Si 0.741 3.259 18 H -0.180 1.180 19 H -0.199 1.199 20 H -0.199 1.199 21 O -0.285 6.285 22 C -0.063 4.063 23 C -0.060 4.060 24 O -0.293 6.293 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.225 0.775 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.137 0.863 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.118 0.882 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.324 -12.096 1.524 14.762 hybrid contribution 0.035 -0.036 -0.099 0.111 sum -8.288 -12.131 1.425 14.761 Atomic orbital electron populations 1.22299 0.93013 1.03303 1.03914 1.23740 0.93349 0.91197 0.75046 1.21467 0.82906 0.92495 1.03036 1.45778 1.05047 1.09338 1.79215 1.18423 0.88094 0.82281 0.75280 1.90668 1.70413 1.30396 1.50340 1.19435 0.90380 0.94791 1.21891 1.20609 0.94127 0.95024 0.97736 1.20259 0.93526 0.96586 1.16225 1.20796 0.97582 0.93339 0.99769 1.21379 0.94467 0.96423 1.04456 1.17491 0.91327 0.91361 0.85770 1.20250 1.06176 0.90714 1.27166 0.87581 1.26136 0.93878 1.01689 0.93256 1.69723 1.18945 1.31145 1.22060 0.86100 0.80113 0.80263 0.79379 1.18021 1.19914 1.19923 1.89349 1.86103 1.21428 1.31580 1.24395 1.01407 0.85344 0.95135 1.24248 0.96978 0.89817 0.94912 1.88958 1.69525 1.41692 1.29122 0.90316 0.91630 0.90208 0.90431 0.90207 0.77452 0.89610 0.89180 0.89109 0.86310 0.90808 0.90750 0.87225 0.88191 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 9.19 37.16 0.34 -1.40 16 2 C 0.24 3.23 1.02 -26.73 -0.03 3.20 16 3 C 0.13 2.09 5.09 -4.04 -0.02 2.07 16 4 N -0.74 -14.28 5.29 -61.38 -0.32 -14.61 16 5 C 0.57 13.70 7.72 -12.52 -0.10 13.61 16 6 O -0.54 -14.65 13.57 5.27 0.07 -14.58 16 7 C -0.26 -6.57 5.92 -104.37 -0.62 -7.19 16 8 C -0.06 -1.24 9.52 -39.22 -0.37 -1.61 16 9 C -0.25 -5.34 10.03 -39.37 -0.39 -5.74 16 10 C -0.10 -2.20 10.01 -39.60 -0.40 -2.60 16 11 C -0.15 -3.83 8.62 -38.89 -0.34 -4.16 16 12 C 0.14 3.97 5.52 -106.54 -0.59 3.38 16 13 C -0.41 -11.63 7.71 -37.81 -0.29 -11.93 16 14 H 0.11 3.09 5.87 -52.49 -0.31 2.78 16 15 C 0.07 1.79 5.27 -17.30 -0.09 1.70 16 16 N -0.79 -20.87 11.06 55.56 0.61 -20.25 16 17 Si 0.92 19.98 29.57 -169.99 -5.03 14.95 16 18 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 O -0.36 -4.77 10.76 -59.04 -0.64 -5.41 16 22 C 0.01 0.12 7.91 38.17 0.30 0.43 16 23 C 0.02 0.17 7.68 38.17 0.29 0.46 16 24 O -0.37 -4.96 10.61 -59.04 -0.63 -5.59 16 25 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.39 6.84 5.49 -40.82 -0.22 6.62 16 31 H 0.09 1.59 6.44 -52.49 -0.34 1.25 16 32 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.09 1.83 8.06 -52.48 -0.42 1.40 16 34 H 0.12 3.13 6.51 -52.49 -0.34 2.78 16 35 H 0.28 6.69 8.29 -40.82 -0.34 6.35 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.78 7.76 -51.93 -0.40 0.38 16 LS Contribution 324.99 15.07 4.90 4.90 Total: -1.00 -31.81 324.99 -8.30 -40.12 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -4.98 Total: 10.24 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -2.30 Total: -9.77 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.29 Total: -34.86 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -1.19 Total: -25.58 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.81 -8.30 -40.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866876109.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.360 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds