Wall clock time and date at job start Tue Mar 31 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.62994 * 2 1 4 4 N 1.46494 * 109.47158 * 180.30371 * 3 2 1 5 5 C 1.34785 * 120.00176 * 179.97438 * 4 3 2 6 6 O 1.21612 * 119.99513 * 0.02562 * 5 4 3 7 7 C 1.47426 * 120.00056 * 180.02562 * 5 4 3 8 8 C 1.39227 * 120.28485 * 5.54019 * 7 5 4 9 9 C 1.38217 * 120.09216 * 179.97438 * 8 7 5 10 10 C 1.38824 * 120.67796 * 0.02760 * 9 8 7 11 11 C 1.37601 * 120.56925 * 359.97212 * 10 9 8 12 12 C 1.40699 * 119.88020 * 0.02562 * 11 10 9 13 13 C 1.40893 * 120.32716 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00136 * 213.40009 * 13 12 11 15 15 C 1.40279 * 119.99632 * 33.40612 * 13 12 11 16 16 N 1.30621 * 120.00214 * 8.70630 * 15 13 12 17 17 Si 1.86795 * 119.99676 * 188.70956 * 15 13 12 18 18 H 1.48501 * 109.47544 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47348 * 119.99848 * 17 15 13 20 20 H 1.48496 * 109.47108 * 239.99773 * 17 15 13 21 21 O 1.43751 * 109.50546 * 120.31386 * 2 1 3 22 22 C 1.44794 * 104.81159 * 95.49450 * 21 2 1 23 23 C 1.54912 * 101.72215 * 36.10119 * 22 21 2 24 24 O 1.43365 * 109.63103 * 239.60799 * 2 1 3 25 25 H 1.09011 * 109.46477 * 59.99839 * 1 2 3 26 26 H 1.08994 * 109.47430 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47388 * 300.00440 * 1 2 3 28 28 H 1.08998 * 109.46791 * 60.30294 * 3 2 1 29 29 H 1.09001 * 109.46868 * 300.30614 * 3 2 1 30 30 H 0.97001 * 119.99990 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.95056 * 0.25474 * 8 7 5 32 32 H 1.08001 * 119.66315 * 179.97438 * 9 8 7 33 33 H 1.08005 * 119.71882 * 179.97438 * 10 9 8 34 34 H 1.08000 * 120.05469 * 180.02562 * 11 10 9 35 35 H 0.97001 * 120.00080 * 179.97438 * 16 15 13 36 36 H 1.08994 * 110.97648 * 277.99488 * 22 21 2 37 37 H 1.08995 * 110.97503 * 154.21192 * 22 21 2 38 38 H 1.08997 * 110.69861 * 206.04243 * 23 22 21 39 39 H 1.09003 * 110.69694 * 82.83557 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 7 3.5089 1.4370 -0.0073 5 6 4.1861 2.6024 -0.0091 6 8 3.5809 3.6573 -0.0042 7 6 5.6603 2.5983 -0.0171 8 6 6.3585 1.3999 -0.1388 9 6 7.7406 1.4008 -0.1463 10 6 8.4488 2.5893 -0.0327 11 6 7.7869 3.7895 0.0889 12 6 6.3802 3.8162 0.0993 13 6 5.6927 5.0397 0.2239 14 1 4.7505 5.0786 0.7503 15 6 6.2322 6.2074 -0.3358 16 7 7.2784 6.1355 -1.1145 17 14 5.4543 7.8653 0.0326 18 1 4.2895 7.6763 0.9342 19 1 6.4528 8.7452 0.6912 20 1 5.0017 8.4923 -1.2351 21 8 2.0100 -0.6839 1.1697 22 6 2.2599 -2.0403 0.7290 23 6 2.7855 -1.8118 -0.7102 24 8 2.0117 -0.6831 -1.1648 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6865 1.9543 0.8927 29 1 1.6776 1.9575 -0.8872 30 1 3.9916 0.5957 -0.0116 31 1 5.8192 0.4688 -0.2320 32 1 8.2752 0.4671 -0.2406 33 1 9.5287 2.5720 -0.0400 34 1 8.3461 4.7093 0.1764 35 1 7.6512 6.9429 -1.5018 36 1 1.3393 -2.6236 0.7202 37 1 3.0174 -2.5189 1.3497 38 1 2.5948 -2.6856 -1.3332 39 1 3.8484 -1.5704 -0.6984 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866876109.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:22 Heat of formation + Delta-G solvation = -125.034408 kcal Electronic energy + Delta-G solvation = -23515.610459 eV Core-core repulsion = 20001.199505 eV Total energy + Delta-G solvation = -3514.410954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.78144 -40.51805 -38.56921 -36.06590 -35.91959 -35.36481 -33.16612 -31.79357 -31.25467 -29.46460 -27.86631 -26.83831 -24.17612 -23.86705 -22.76517 -22.25149 -21.07961 -19.47814 -18.57840 -18.02606 -17.52059 -17.14491 -16.67313 -16.58741 -15.97240 -15.82983 -15.66923 -15.01822 -14.94043 -14.50383 -14.43831 -14.34300 -13.84821 -13.78779 -13.67449 -13.33110 -13.20558 -13.05897 -12.85699 -12.80321 -12.50120 -12.32186 -12.26281 -11.90093 -11.50591 -11.15250 -11.13294 -10.80034 -10.26945 -10.00809 -9.40471 -9.24472 -8.67678 -6.36872 0.50654 1.00333 1.33352 1.47809 1.49745 2.21614 2.31216 2.38251 2.41443 2.78207 2.79685 3.56493 3.71519 3.72709 3.97181 4.09832 4.21426 4.30150 4.33805 4.39501 4.54701 4.57144 4.64655 4.71342 4.74004 4.82160 4.91376 4.97040 5.09236 5.13337 5.24479 5.33599 5.58443 5.61205 5.81885 6.04812 6.06627 6.10147 6.33960 6.62695 6.77159 6.90743 6.99679 7.61706 8.29510 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019360 B = 0.004799 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.944503 B = 5833.240604 C = 6993.136915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.251 3.749 3 C 0.118 3.882 4 N -0.720 5.720 5 C 0.558 3.442 6 O -0.579 6.579 7 C -0.282 4.282 8 C -0.055 4.055 9 C -0.235 4.235 10 C -0.091 4.091 11 C -0.176 4.176 12 C 0.114 3.886 13 C -0.456 4.456 14 H 0.081 0.919 15 C 0.031 3.969 16 N -0.822 5.822 17 Si 0.981 3.019 18 H -0.270 1.270 19 H -0.253 1.253 20 H -0.266 1.266 21 O -0.387 6.387 22 C 0.012 3.988 23 C 0.008 3.992 24 O -0.391 6.391 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.402 0.598 31 H 0.124 0.876 32 H 0.134 0.866 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.290 0.710 36 H 0.097 0.903 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.912 -15.969 1.554 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.174 3.826 3 C -0.006 4.006 4 N -0.374 5.374 5 C 0.351 3.649 6 O -0.461 6.461 7 C -0.287 4.287 8 C -0.073 4.073 9 C -0.254 4.254 10 C -0.110 4.110 11 C -0.195 4.195 12 C 0.110 3.890 13 C -0.485 4.485 14 H 0.099 0.901 15 C -0.184 4.184 16 N -0.448 5.448 17 Si 0.802 3.198 18 H -0.195 1.195 19 H -0.177 1.177 20 H -0.191 1.191 21 O -0.308 6.308 22 C -0.064 4.064 23 C -0.068 4.068 24 O -0.313 6.313 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.238 0.762 31 H 0.142 0.858 32 H 0.152 0.848 33 H 0.140 0.860 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.227 -14.934 1.414 17.109 hybrid contribution 0.061 0.553 -0.071 0.561 sum -8.166 -14.381 1.343 16.592 Atomic orbital electron populations 1.22273 0.90746 1.04736 1.04266 1.23588 0.94646 0.88941 0.75457 1.21678 0.80993 0.95749 1.02201 1.45548 1.06331 1.08237 1.77268 1.18516 0.88212 0.82998 0.75156 1.90641 1.71073 1.32147 1.52249 1.19808 0.91308 0.95573 1.22030 1.20994 0.94790 0.95275 0.96256 1.20787 0.93493 0.97783 1.13304 1.21196 0.99363 0.92722 0.97717 1.21330 0.94012 0.97286 1.06899 1.17876 0.92460 0.92204 0.86482 1.20190 1.06090 0.92570 1.29668 0.90116 1.26817 0.94415 1.04455 0.92694 1.69740 1.19960 1.32356 1.22755 0.85184 0.79092 0.76381 0.79162 1.19461 1.17666 1.19109 1.89324 1.86329 1.23559 1.31573 1.24691 1.03169 0.83743 0.94772 1.24536 0.96482 0.89734 0.96044 1.88948 1.70097 1.42868 1.29386 0.90107 0.89584 0.89810 0.91265 0.91198 0.76207 0.85792 0.84770 0.85992 0.87885 0.89966 0.88504 0.85236 0.85269 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.19 71.98 0.66 -2.43 16 2 C 0.25 6.29 1.02 30.60 0.03 6.32 16 3 C 0.12 3.97 5.09 86.38 0.44 4.41 16 4 N -0.72 -27.80 5.29 -466.37 -2.47 -30.27 16 5 C 0.56 27.84 7.72 86.66 0.67 28.51 16 6 O -0.58 -33.22 13.57 -4.07 -0.06 -33.28 16 7 C -0.28 -14.46 5.92 -19.70 -0.12 -14.57 16 8 C -0.05 -2.28 9.52 22.50 0.21 -2.07 16 9 C -0.23 -9.35 10.03 22.41 0.22 -9.13 16 10 C -0.09 -4.03 10.01 22.26 0.22 -3.81 16 11 C -0.18 -9.27 8.62 22.72 0.20 -9.07 16 12 C 0.11 6.47 5.52 -21.11 -0.12 6.35 16 13 C -0.46 -27.11 7.71 23.42 0.18 -26.93 16 14 H 0.08 5.07 5.87 -2.91 -0.02 5.05 16 15 C 0.03 1.69 5.27 85.37 0.45 2.14 16 16 N -0.82 -44.73 11.06 21.88 0.24 -44.49 16 17 Si 0.98 42.66 29.57 68.60 2.03 44.69 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 O -0.39 -9.31 10.76 -126.22 -1.36 -10.67 16 22 C 0.01 0.17 7.91 72.64 0.57 0.75 16 23 C 0.01 0.13 7.68 72.64 0.56 0.68 16 24 O -0.39 -9.63 10.61 -126.22 -1.34 -10.97 16 25 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.40 13.47 5.49 -92.71 -0.51 12.96 16 31 H 0.12 4.15 6.44 -2.91 -0.02 4.13 16 32 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 33 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 34 H 0.10 5.64 6.51 -2.91 -0.02 5.62 16 35 H 0.29 14.14 8.29 -92.71 -0.77 13.37 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.26 7.76 -2.39 -0.02 1.24 16 Total: -1.00 -73.02 324.99 1.81 -71.21 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.57 Total: 32.63 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 4.19 Total: -18.85 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -2.23 Total: -74.75 kcal Atomic # 8 Polarization: -52.17 SS G_CDS: -2.75 Total: -54.92 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -73.02 1.81 -71.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866876109.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.824 kcal (2) G-P(sol) polarization free energy of solvation -73.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds