Wall clock time and date at job start Tue Mar 31 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 119.88080 * 2 1 4 4 C 1.37957 * 120.23496 * 179.97438 * 3 2 1 5 5 C 1.39705 * 119.99503 * 0.02562 * 4 3 2 6 6 C 1.47685 * 120.11146 * 179.97438 * 5 4 3 7 7 O 1.21505 * 119.99480 * 179.97438 * 6 5 4 8 8 O 1.34728 * 120.00482 * 359.97438 * 6 5 4 9 9 C 1.34852 * 117.00062 * 180.02562 * 8 6 5 10 10 H 1.07998 * 120.00178 * 0.02562 * 9 8 6 11 11 C 1.38809 * 119.99837 * 180.02562 * 9 8 6 12 12 N 1.31412 * 120.00275 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00036 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47021 * 89.99536 * 13 11 9 15 15 H 1.48501 * 109.47144 * 209.99593 * 13 11 9 16 16 H 1.48500 * 109.46917 * 329.99644 * 13 11 9 17 17 C 1.39542 * 119.76805 * 359.97438 * 5 4 3 18 18 C 1.38658 * 119.76290 * 359.73134 * 17 5 4 19 19 N 1.39711 * 119.99901 * 180.26686 * 18 17 5 20 20 C 1.47012 * 110.99571 * 63.91242 * 19 18 17 21 21 C 1.53101 * 109.25531 * 177.60807 * 20 19 18 22 22 O 1.43003 * 109.25931 * 56.84665 * 21 20 19 23 23 C 1.43020 * 113.73992 * 301.32962 * 22 21 20 24 24 C 1.47011 * 111.00065 * 300.27535 * 19 18 17 25 25 H 1.09002 * 109.47152 * 90.00136 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00237 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00217 * 1 2 3 28 28 H 1.07999 * 119.88183 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.99652 * 180.02562 * 4 3 2 30 30 H 0.96999 * 120.00101 * 179.97438 * 12 11 9 31 31 H 1.07995 * 120.11771 * 180.02562 * 17 5 4 32 32 H 1.08998 * 109.50845 * 297.53619 * 20 19 18 33 33 H 1.09004 * 109.50943 * 57.67374 * 20 19 18 34 34 H 1.09003 * 109.50217 * 296.90769 * 21 20 19 35 35 H 1.08999 * 109.54178 * 176.80752 * 21 20 19 36 36 H 1.08995 * 109.50394 * 298.73525 * 23 22 21 37 37 H 1.09000 * 109.54152 * 178.62838 * 23 22 21 38 38 H 1.08992 * 109.50562 * 302.32687 * 24 19 18 39 39 H 1.09003 * 109.50545 * 62.41733 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1989 0.0000 4 6 3.5754 1.2074 0.0005 5 6 4.2813 0.0018 0.0005 6 6 5.7581 0.0079 0.0005 7 8 6.3699 -1.0419 0.0010 8 8 6.4270 1.1774 0.0000 9 6 7.7740 1.1123 -0.0005 10 1 8.2682 0.1521 -0.0009 11 6 8.5252 2.2796 -0.0005 12 7 7.9239 3.4480 -0.0005 13 14 10.3911 2.1895 -0.0019 14 1 10.8844 2.1662 -1.4024 15 1 10.9445 3.3764 0.6982 16 1 10.8275 0.9542 0.6973 17 6 3.5861 -1.2081 0.0005 18 6 2.1995 -1.2052 0.0062 19 7 1.4985 -2.4137 0.0118 20 6 1.7612 -3.1693 1.2452 21 6 0.9295 -4.4547 1.2368 22 8 1.2400 -5.2097 0.0627 23 6 0.9954 -4.5041 -1.1571 24 6 1.8278 -3.2194 -1.1729 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6520 2.1319 0.0004 29 1 4.1096 2.1461 0.0009 30 1 8.4488 4.2637 -0.0002 31 1 4.1260 -2.1434 0.0010 32 1 2.8203 -3.4215 1.2989 33 1 1.4864 -2.5636 2.1088 34 1 -0.1308 -4.2020 1.2373 35 1 1.1631 -5.0459 2.1222 36 1 -0.0630 -4.2530 -1.2262 37 1 1.2768 -5.1307 -2.0034 38 1 1.6015 -2.6502 -2.0744 39 1 2.8881 -3.4717 -1.1582 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869691544.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:44 Heat of formation + Delta-G solvation = -89.276871 kcal Electronic energy + Delta-G solvation = -23072.107165 eV Core-core repulsion = 19559.246775 eV Total energy + Delta-G solvation = -3512.860391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.48442 -39.16114 -38.20880 -35.54343 -35.16555 -32.58047 -32.17477 -31.35415 -30.08834 -27.64090 -26.47407 -25.13942 -24.14561 -22.69766 -22.02453 -20.30953 -19.90000 -17.82350 -17.57832 -16.30785 -16.19255 -15.71513 -15.26865 -15.22840 -15.13845 -14.74663 -14.53064 -14.36754 -14.12732 -13.83140 -13.43846 -13.24865 -12.61402 -12.57821 -12.09957 -11.92405 -11.71320 -11.56527 -11.52583 -11.43131 -11.18016 -11.10160 -10.66929 -10.49509 -10.45700 -9.90703 -9.86685 -9.16763 -8.65954 -8.63911 -8.61349 -8.33037 -6.50640 -4.13360 1.18992 1.51051 3.08758 3.15083 3.21295 3.39862 3.53854 3.73342 3.88703 4.25674 4.48709 4.72763 4.84283 4.96829 5.04929 5.05558 5.08204 5.10413 5.12319 5.36187 5.41792 5.44965 5.51654 5.63346 5.67719 5.72927 5.78822 5.82856 5.89677 5.98810 6.16888 6.35888 6.67900 6.69711 6.72245 6.87855 6.94623 7.00281 7.32605 7.38982 7.87229 8.64894 8.98141 9.77845 10.66999 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024261 B = 0.003759 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.820092 B = 7447.417681 C = 8277.198765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.049 4.049 3 C -0.129 4.129 4 C -0.067 4.067 5 C -0.083 4.083 6 C 0.430 3.570 7 O -0.556 6.556 8 O -0.203 6.203 9 C -0.375 4.375 10 H 0.097 0.903 11 C 0.042 3.958 12 N -0.858 5.858 13 Si 0.945 3.055 14 H -0.272 1.272 15 H -0.277 1.277 16 H -0.266 1.266 17 C -0.093 4.093 18 C 0.062 3.938 19 N -0.490 5.490 20 C 0.017 3.983 21 C 0.066 3.934 22 O -0.386 6.386 23 C 0.066 3.934 24 C 0.017 3.983 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.129 0.871 29 H 0.143 0.857 30 H 0.272 0.728 31 H 0.129 0.871 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.746 -8.520 0.057 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.051 4.051 3 C -0.148 4.148 4 C -0.086 4.086 5 C -0.085 4.085 6 C 0.278 3.722 7 O -0.455 6.455 8 O -0.110 6.110 9 C -0.451 4.451 10 H 0.115 0.885 11 C -0.163 4.163 12 N -0.495 5.495 13 Si 0.770 3.230 14 H -0.198 1.198 15 H -0.202 1.202 16 H -0.190 1.190 17 C -0.114 4.114 18 C -0.032 4.032 19 N -0.212 5.212 20 C -0.110 4.110 21 C -0.011 4.011 22 O -0.304 6.304 23 C -0.011 4.011 24 C -0.110 4.110 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.147 0.853 29 H 0.161 0.839 30 H 0.081 0.919 31 H 0.147 0.853 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.959 -8.637 0.054 19.032 hybrid contribution 1.844 0.210 -0.012 1.856 sum -15.116 -8.427 0.042 17.306 Atomic orbital electron populations 1.20642 0.90733 1.02490 1.02077 1.19864 0.96263 0.91280 0.97651 1.20965 0.93906 0.97333 1.02558 1.21665 0.93926 0.98513 0.94458 1.19267 0.91240 0.93710 1.04273 1.20778 0.87857 0.83509 0.80007 1.90619 1.69741 1.33323 1.51773 1.83885 1.21967 1.30435 1.74727 1.21319 0.77268 0.95066 1.51486 0.88498 1.25383 1.00844 0.93972 0.96083 1.69969 1.36582 0.97472 1.45436 0.85640 0.80166 0.78392 0.78848 1.19755 1.20191 1.18987 1.21640 0.93809 0.98086 0.97818 1.18312 0.89589 0.90383 1.04873 1.59848 1.56078 1.02835 1.02471 1.22901 0.99833 0.95385 0.92886 1.22665 0.98540 0.91478 0.88399 1.87989 1.87615 1.40724 1.14109 1.22664 0.98955 0.92192 0.87264 1.22892 0.99475 0.94838 0.93770 0.91520 0.92197 0.90662 0.85332 0.83933 0.91858 0.85341 0.93071 0.89353 0.92267 0.88363 0.92250 0.88356 0.89357 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 9.76 36.01 0.35 -0.72 16 2 C -0.05 -0.68 5.90 -104.33 -0.62 -1.29 16 3 C -0.13 -1.89 9.67 -39.67 -0.38 -2.27 16 4 C -0.07 -1.23 9.61 -39.14 -0.38 -1.61 16 5 C -0.08 -1.73 5.87 -105.01 -0.62 -2.35 16 6 C 0.43 11.26 7.84 34.59 0.27 11.53 16 7 O -0.56 -15.66 15.59 -19.27 -0.30 -15.96 16 8 O -0.20 -5.90 8.99 -21.62 -0.19 -6.10 16 9 C -0.38 -11.17 9.65 30.94 0.30 -10.87 16 10 H 0.10 2.91 6.86 -52.49 -0.36 2.55 16 11 C 0.04 1.18 5.50 -17.52 -0.10 1.08 16 12 N -0.86 -24.75 13.67 55.49 0.76 -23.99 16 13 Si 0.95 21.15 29.55 -169.99 -5.02 16.13 16 14 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 15 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 17 C -0.09 -1.69 8.16 -38.94 -0.32 -2.01 16 18 C 0.06 0.92 4.71 -83.83 -0.39 0.53 16 19 N -0.49 -6.12 3.62 -170.85 -0.62 -6.74 16 20 C 0.02 0.20 5.41 -3.71 -0.02 0.18 16 21 C 0.07 0.65 7.01 37.21 0.26 0.91 16 22 O -0.39 -4.52 10.83 -35.23 -0.38 -4.90 16 23 C 0.07 0.65 7.01 37.21 0.26 0.91 16 24 C 0.02 0.20 5.36 -3.71 -0.02 0.18 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.07 0.77 7.43 -51.93 -0.39 0.38 16 28 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 29 H 0.14 2.77 7.61 -52.49 -0.40 2.37 16 30 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 31 H 0.13 2.44 6.62 -52.49 -0.35 2.09 16 32 H 0.05 0.69 7.42 -51.93 -0.39 0.30 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.69 7.19 -51.93 -0.37 0.32 16 LS Contribution 329.59 15.07 4.97 4.97 Total: -1.00 -33.21 329.59 -7.38 -40.59 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.19 Total: 1.81 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -1.40 Total: -5.80 kcal Atomic # 7 Polarization: -30.87 SS G_CDS: 0.14 Total: -30.73 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.88 Total: -26.96 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.21 -7.38 -40.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869691544.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.686 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds