Wall clock time and date at job start Tue Mar 31 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 119.88080 * 2 1 4 4 C 1.37957 * 120.23496 * 179.97438 * 3 2 1 5 5 C 1.39705 * 119.99503 * 0.02562 * 4 3 2 6 6 C 1.47685 * 120.11146 * 179.97438 * 5 4 3 7 7 O 1.21505 * 119.99480 * 179.97438 * 6 5 4 8 8 O 1.34728 * 120.00482 * 359.97438 * 6 5 4 9 9 C 1.34852 * 117.00062 * 180.02562 * 8 6 5 10 10 H 1.07998 * 120.00178 * 0.02562 * 9 8 6 11 11 C 1.38809 * 119.99837 * 180.02562 * 9 8 6 12 12 N 1.31412 * 120.00275 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00036 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47021 * 89.99536 * 13 11 9 15 15 H 1.48501 * 109.47144 * 209.99593 * 13 11 9 16 16 H 1.48500 * 109.46917 * 329.99644 * 13 11 9 17 17 C 1.39542 * 119.76805 * 359.97438 * 5 4 3 18 18 C 1.38658 * 119.76290 * 359.73134 * 17 5 4 19 19 N 1.39711 * 119.99901 * 180.26686 * 18 17 5 20 20 C 1.47012 * 110.99571 * 63.91242 * 19 18 17 21 21 C 1.53101 * 109.25531 * 177.60807 * 20 19 18 22 22 O 1.43003 * 109.25931 * 56.84665 * 21 20 19 23 23 C 1.43020 * 113.73992 * 301.32962 * 22 21 20 24 24 C 1.47011 * 111.00065 * 300.27535 * 19 18 17 25 25 H 1.09002 * 109.47152 * 90.00136 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00237 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00217 * 1 2 3 28 28 H 1.07999 * 119.88183 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.99652 * 180.02562 * 4 3 2 30 30 H 0.96999 * 120.00101 * 179.97438 * 12 11 9 31 31 H 1.07995 * 120.11771 * 180.02562 * 17 5 4 32 32 H 1.08998 * 109.50845 * 297.53619 * 20 19 18 33 33 H 1.09004 * 109.50943 * 57.67374 * 20 19 18 34 34 H 1.09003 * 109.50217 * 296.90769 * 21 20 19 35 35 H 1.08999 * 109.54178 * 176.80752 * 21 20 19 36 36 H 1.08995 * 109.50394 * 298.73525 * 23 22 21 37 37 H 1.09000 * 109.54152 * 178.62838 * 23 22 21 38 38 H 1.08992 * 109.50562 * 302.32687 * 24 19 18 39 39 H 1.09003 * 109.50545 * 62.41733 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1989 0.0000 4 6 3.5754 1.2074 0.0005 5 6 4.2813 0.0018 0.0005 6 6 5.7581 0.0079 0.0005 7 8 6.3699 -1.0419 0.0010 8 8 6.4270 1.1774 0.0000 9 6 7.7740 1.1123 -0.0005 10 1 8.2682 0.1521 -0.0009 11 6 8.5252 2.2796 -0.0005 12 7 7.9239 3.4480 -0.0005 13 14 10.3911 2.1895 -0.0019 14 1 10.8844 2.1662 -1.4024 15 1 10.9445 3.3764 0.6982 16 1 10.8275 0.9542 0.6973 17 6 3.5861 -1.2081 0.0005 18 6 2.1995 -1.2052 0.0062 19 7 1.4985 -2.4137 0.0118 20 6 1.7612 -3.1693 1.2452 21 6 0.9295 -4.4547 1.2368 22 8 1.2400 -5.2097 0.0627 23 6 0.9954 -4.5041 -1.1571 24 6 1.8278 -3.2194 -1.1729 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6520 2.1319 0.0004 29 1 4.1096 2.1461 0.0009 30 1 8.4488 4.2637 -0.0002 31 1 4.1260 -2.1434 0.0010 32 1 2.8203 -3.4215 1.2989 33 1 1.4864 -2.5636 2.1088 34 1 -0.1308 -4.2020 1.2373 35 1 1.1631 -5.0459 2.1222 36 1 -0.0630 -4.2530 -1.2262 37 1 1.2768 -5.1307 -2.0034 38 1 1.6015 -2.6502 -2.0744 39 1 2.8881 -3.4717 -1.1582 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869691544.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:44 Heat of formation + Delta-G solvation = -110.837878 kcal Electronic energy + Delta-G solvation = -23073.042121 eV Core-core repulsion = 19559.246775 eV Total energy + Delta-G solvation = -3513.795346 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.74269 -40.92187 -39.50602 -37.37371 -36.56738 -34.42719 -33.79596 -32.21122 -31.32195 -28.94178 -27.87643 -26.86152 -25.02120 -24.09899 -23.43760 -21.56293 -21.29334 -19.96646 -19.17340 -17.69903 -17.18186 -17.16095 -16.70774 -16.67985 -16.22121 -16.17973 -16.11737 -15.97801 -15.45541 -15.04718 -14.48503 -14.43089 -14.40123 -13.69732 -13.44791 -13.37382 -13.11939 -12.89430 -12.69696 -12.54974 -12.40483 -12.35287 -12.34141 -12.20542 -12.06922 -11.56861 -11.25602 -10.77766 -10.75054 -9.96819 -9.76695 -9.65435 -8.63468 -6.41285 -0.29176 0.17016 1.29981 1.32442 1.47725 1.68615 2.04329 2.50877 2.62418 2.65416 2.93432 2.95598 3.73748 3.85620 3.90005 3.97067 4.10193 4.11470 4.18044 4.21464 4.21758 4.46343 4.48055 4.59714 4.68785 4.74870 4.78207 4.83025 4.91839 4.96499 4.98764 5.04260 5.29112 5.32691 5.37219 5.50964 5.67105 5.70445 5.73112 6.15772 6.16686 6.50415 6.80448 7.62711 8.56955 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024261 B = 0.003759 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.820092 B = 7447.417681 C = 8277.198765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.027 4.027 3 C -0.115 4.115 4 C -0.073 4.073 5 C -0.122 4.122 6 C 0.428 3.572 7 O -0.588 6.588 8 O -0.228 6.228 9 C -0.426 4.426 10 H 0.080 0.920 11 C 0.001 3.999 12 N -0.893 5.893 13 Si 1.020 2.980 14 H -0.258 1.258 15 H -0.254 1.254 16 H -0.265 1.265 17 C -0.096 4.096 18 C 0.069 3.931 19 N -0.477 5.477 20 C 0.014 3.986 21 C 0.070 3.930 22 O -0.406 6.406 23 C 0.070 3.930 24 C 0.014 3.986 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.169 0.831 29 H 0.124 0.876 30 H 0.283 0.717 31 H 0.108 0.892 32 H 0.023 0.977 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.637 -8.368 0.029 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.028 4.028 3 C -0.133 4.133 4 C -0.092 4.092 5 C -0.123 4.123 6 C 0.279 3.721 7 O -0.489 6.489 8 O -0.135 6.135 9 C -0.501 4.501 10 H 0.097 0.903 11 C -0.201 4.201 12 N -0.530 5.530 13 Si 0.838 3.162 14 H -0.182 1.182 15 H -0.178 1.178 16 H -0.190 1.190 17 C -0.116 4.116 18 C -0.025 4.025 19 N -0.198 5.198 20 C -0.113 4.113 21 C -0.007 4.007 22 O -0.325 6.325 23 C -0.007 4.007 24 C -0.113 4.113 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.187 0.813 29 H 0.142 0.858 30 H 0.092 0.908 31 H 0.126 0.874 32 H 0.042 0.958 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.132 0.868 36 H 0.098 0.902 37 H 0.131 0.869 38 H 0.115 0.885 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -19.888 -8.486 0.025 21.623 hybrid contribution 2.509 0.081 -0.005 2.511 sum -17.379 -8.405 0.019 19.305 Atomic orbital electron populations 1.20761 0.87092 1.04114 1.03631 1.20379 0.98583 0.90020 0.93850 1.21325 0.91976 0.99512 1.00485 1.21587 0.95730 0.96587 0.95274 1.19102 0.88079 0.96025 1.09141 1.21873 0.90133 0.82469 0.77665 1.90559 1.71159 1.34148 1.52985 1.83907 1.21959 1.31670 1.75989 1.21506 0.78014 0.95373 1.55199 0.90264 1.26591 1.06294 0.92895 0.94275 1.70039 1.39058 0.98334 1.45524 0.84606 0.72827 0.79047 0.79717 1.18232 1.17801 1.18972 1.21575 0.95419 0.96164 0.98449 1.18522 0.88114 0.92396 1.03479 1.60062 1.54445 1.02193 1.03137 1.23004 0.98796 0.96685 0.92840 1.22780 0.99110 0.90323 0.88474 1.87972 1.87936 1.41548 1.15059 1.22771 0.99555 0.91086 0.87239 1.22990 0.98439 0.96085 0.93796 0.89686 0.89789 0.89926 0.81347 0.85793 0.90778 0.87424 0.95839 0.88316 0.90180 0.86832 0.90192 0.86867 0.88456 0.95797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 9.76 71.24 0.70 -0.84 16 2 C -0.03 -0.66 5.90 -19.67 -0.12 -0.78 16 3 C -0.11 -3.07 9.67 22.21 0.21 -2.85 16 4 C -0.07 -2.75 9.61 22.56 0.22 -2.53 16 5 C -0.12 -5.39 5.87 -20.11 -0.12 -5.51 16 6 C 0.43 24.26 7.84 70.32 0.55 24.81 16 7 O -0.59 -35.95 15.59 19.82 0.31 -35.64 16 8 O -0.23 -14.21 8.99 11.40 0.10 -14.10 16 9 C -0.43 -26.95 9.65 67.96 0.66 -26.29 16 10 H 0.08 5.13 6.86 -2.91 -0.02 5.11 16 11 C 0.00 0.05 5.50 84.89 0.47 0.52 16 12 N -0.89 -52.92 13.67 21.63 0.30 -52.62 16 13 Si 1.02 44.04 29.55 68.60 2.03 46.07 16 14 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 15 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 17 C -0.10 -3.63 8.16 22.68 0.19 -3.44 16 18 C 0.07 1.97 4.71 38.17 0.18 2.15 16 19 N -0.48 -11.03 3.62 -694.45 -2.52 -13.54 16 20 C 0.01 0.30 5.41 86.32 0.47 0.77 16 21 C 0.07 1.20 7.01 72.02 0.50 1.71 16 22 O -0.41 -8.74 10.83 -148.98 -1.61 -10.36 16 23 C 0.07 1.22 7.01 72.01 0.50 1.72 16 24 C 0.01 0.31 5.36 86.31 0.46 0.77 16 25 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 27 H 0.08 1.24 7.43 -2.38 -0.02 1.22 16 28 H 0.17 3.21 8.06 -2.91 -0.02 3.18 16 29 H 0.12 5.08 7.61 -2.91 -0.02 5.06 16 30 H 0.28 15.03 8.31 -92.71 -0.77 14.25 16 31 H 0.11 4.47 6.62 -2.91 -0.02 4.45 16 32 H 0.02 0.65 7.42 -2.39 -0.02 0.63 16 33 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.02 0.67 7.19 -2.39 -0.02 0.65 16 Total: -1.00 -78.37 329.59 4.53 -73.84 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 1.06 Total: 16.16 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 4.87 Total: -9.80 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -2.22 Total: -66.16 kcal Atomic # 8 Polarization: -58.90 SS G_CDS: -1.20 Total: -60.10 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -78.37 4.53 -73.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869691544.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.998 kcal (2) G-P(sol) polarization free energy of solvation -78.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds