Wall clock time and date at job start Tue Mar 31 2020 06:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46507 * 113.00291 * 2 1 4 4 C 1.34781 * 119.99539 * 48.16926 * 3 2 1 5 5 O 1.21282 * 120.00102 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99728 * 180.02562 * 4 3 2 7 7 C 1.50698 * 109.46930 * 180.02562 * 6 4 3 8 8 C 1.38297 * 119.93202 * 89.99982 * 7 6 4 9 9 C 1.38101 * 120.07230 * 180.02562 * 8 7 6 10 10 C 1.38886 * 119.92536 * 359.97438 * 9 8 7 11 11 O 1.35750 * 120.06440 * 180.02562 * 10 9 8 12 12 C 1.34828 * 117.00075 * 5.53777 * 11 10 9 13 13 H 1.07993 * 120.00518 * 354.94289 * 12 11 10 14 14 C 1.38663 * 119.99751 * 174.94575 * 12 11 10 15 15 N 1.31556 * 120.00220 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99821 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47517 * 59.99414 * 16 14 12 18 18 H 1.48505 * 109.47332 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46989 * 299.99567 * 16 14 12 20 20 C 1.38874 * 119.86623 * 0.27854 * 10 9 8 21 21 C 1.38110 * 119.92772 * 359.48927 * 20 10 9 22 22 C 1.54030 * 113.92798 * 131.92991 * 2 1 3 23 23 O 1.44179 * 85.52007 * 91.66131 * 22 2 1 24 24 C 1.44181 * 93.33610 * 24.19321 * 23 22 2 25 25 H 1.08997 * 109.47183 * 69.66823 * 1 2 3 26 26 H 1.08993 * 109.47422 * 189.66746 * 1 2 3 27 27 H 1.09004 * 109.47267 * 309.66692 * 1 2 3 28 28 H 0.96995 * 120.00045 * 228.18123 * 3 2 1 29 29 H 1.09003 * 109.46768 * 60.00063 * 6 4 3 30 30 H 1.09004 * 109.46918 * 300.00219 * 6 4 3 31 31 H 1.07999 * 119.96698 * 0.02562 * 8 7 6 32 32 H 1.07992 * 120.03608 * 179.97438 * 9 8 7 33 33 H 0.96996 * 120.00178 * 179.97438 * 15 14 12 34 34 H 1.07996 * 120.03745 * 179.72497 * 20 10 9 35 35 H 1.07996 * 119.96227 * 180.23396 * 21 20 10 36 36 H 1.08994 * 113.87052 * 205.80599 * 22 2 1 37 37 H 1.08999 * 113.86383 * 337.51531 * 22 2 1 38 38 H 1.09000 * 113.86553 * 221.65892 * 24 23 22 39 39 H 1.08999 * 113.97897 * 89.97176 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.1024 1.3486 0.0000 4 6 1.6491 2.2730 0.8698 5 8 0.7677 1.9884 1.6527 6 6 2.2376 3.6604 0.8694 7 6 1.5622 4.4928 1.9286 8 6 2.0756 4.5252 3.2123 9 6 1.4586 5.2866 4.1854 10 6 0.3216 6.0207 3.8734 11 8 -0.2868 6.7705 4.8275 12 6 0.3260 6.8512 6.0258 13 1 1.2143 6.2680 6.2184 14 6 -0.1844 7.6830 7.0109 15 7 -1.2663 8.3938 6.7761 16 14 0.6650 7.7954 8.6707 17 1 2.0579 8.2746 8.4826 18 1 -0.0722 8.7468 9.5407 19 1 0.6848 6.4543 9.3084 20 6 -0.1946 5.9820 2.5847 21 6 0.4299 5.2224 1.6149 22 6 2.1546 -0.9408 1.0474 23 8 2.1471 -1.9296 -0.0018 24 6 2.1520 -0.9397 -1.0501 25 1 -0.3633 0.3571 -0.9636 26 1 -0.3634 -1.0130 0.1726 27 1 -0.3634 0.6560 0.7911 28 1 2.8075 1.5761 -0.6260 29 1 2.0842 4.1199 -0.1071 30 1 3.3056 3.6021 1.0798 31 1 2.9599 3.9545 3.4542 32 1 1.8597 5.3111 5.1877 33 1 -1.6235 8.9753 7.4653 34 1 -1.0811 6.5482 2.3402 35 1 0.0311 5.1948 0.6116 36 1 3.1537 -0.6442 1.3666 37 1 1.4916 -1.1762 1.8800 38 1 1.4868 -1.1742 -1.8812 39 1 3.1494 -0.6415 -1.3731 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870664165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:56 Heat of formation + Delta-G solvation = -46.151105 kcal Electronic energy + Delta-G solvation = -22449.080505 eV Core-core repulsion = 18938.090188 eV Total energy + Delta-G solvation = -3510.990317 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.27078 -39.45281 -38.63744 -36.48873 -34.38611 -32.49676 -31.69288 -30.23319 -30.09605 -27.02073 -26.77901 -26.21552 -25.05361 -21.95278 -21.56951 -20.11026 -19.71318 -17.95511 -17.58214 -16.98380 -16.88665 -16.34881 -15.85662 -15.20256 -14.76342 -14.47456 -14.25804 -13.96468 -13.82370 -13.49650 -13.42347 -12.97625 -12.74766 -12.65853 -12.40518 -12.31809 -11.85022 -11.83439 -11.52726 -11.26792 -11.18209 -10.80797 -10.73035 -10.62267 -10.41823 -10.16043 -9.50105 -9.30688 -9.20137 -8.79277 -8.12517 -7.13874 -6.42264 -4.00915 2.26754 2.28157 2.67116 3.05156 3.15041 3.17010 3.18736 3.28592 3.84235 3.99184 4.47486 4.56123 4.72233 4.89574 4.95636 5.13181 5.17917 5.24284 5.27307 5.33961 5.49157 5.50163 5.57260 5.62509 5.67818 5.74757 5.75176 5.87086 6.15673 6.24250 6.34705 6.44334 6.72781 6.93992 7.07774 7.26144 7.38894 7.39838 7.47917 7.86638 8.02941 8.27045 9.03315 9.74105 10.75834 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.030958 B = 0.002922 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.235926 B = 9579.422578 C = 9894.797624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.114 3.886 3 N -0.733 5.733 4 C 0.512 3.488 5 O -0.512 6.512 6 C -0.080 4.080 7 C -0.171 4.171 8 C -0.056 4.056 9 C -0.233 4.233 10 C 0.157 3.843 11 O -0.178 6.178 12 C -0.392 4.392 13 H 0.091 0.909 14 C 0.039 3.961 15 N -0.864 5.864 16 Si 0.941 3.059 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.270 1.270 20 C -0.192 4.192 21 C -0.059 4.059 22 C 0.030 3.970 23 O -0.374 6.374 24 C 0.035 3.965 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.102 0.898 28 H 0.400 0.600 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.126 0.874 33 H 0.270 0.730 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.139 -13.696 -15.404 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.027 3.973 3 N -0.389 5.389 4 C 0.299 3.701 5 O -0.386 6.386 6 C -0.120 4.120 7 C -0.172 4.172 8 C -0.074 4.074 9 C -0.252 4.252 10 C 0.103 3.897 11 O -0.081 6.081 12 C -0.468 4.468 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.499 5.499 16 Si 0.765 3.235 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.195 1.195 20 C -0.211 4.211 21 C -0.078 4.078 22 C -0.048 4.048 23 O -0.292 6.292 24 C -0.043 4.043 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.120 0.880 28 H 0.234 0.766 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.144 0.856 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.105 -13.885 -14.672 21.766 hybrid contribution 0.882 0.248 0.502 1.045 sum 8.987 -13.636 -14.170 21.622 Atomic orbital electron populations 1.22047 0.91142 1.03965 1.04367 1.23697 0.96404 0.81888 0.95310 1.46234 1.41369 1.11639 1.39670 1.21122 0.82527 0.86753 0.79715 1.90667 1.29479 1.80256 1.38154 1.20426 1.00442 0.91003 1.00148 1.18612 1.00018 1.04350 0.94254 1.20496 0.98095 0.96647 0.92204 1.21102 0.99790 1.03878 1.00421 1.19387 0.90684 0.90287 0.89313 1.83975 1.44817 1.59291 1.20043 1.21282 1.11294 1.26790 0.87433 0.89135 1.25284 0.96402 0.95316 0.99504 1.70029 1.20198 1.25138 1.34496 0.85787 0.78947 0.78606 0.80124 1.19517 1.20290 1.19498 1.20153 1.03406 1.06278 0.91281 1.20389 0.94200 0.95516 0.97647 1.24548 1.01068 0.86177 0.93019 1.89719 1.95668 1.26873 1.16922 1.24394 1.00648 0.86418 0.92816 0.92092 0.91219 0.87975 0.76551 0.88962 0.89018 0.87883 0.85619 0.91992 0.86575 0.87436 0.89839 0.88354 0.88394 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.01 37.15 0.33 -1.33 16 2 C 0.11 1.06 1.35 -130.74 -0.18 0.88 16 3 N -0.73 -6.43 5.35 -53.75 -0.29 -6.72 16 4 C 0.51 6.45 7.59 -10.98 -0.08 6.37 16 5 O -0.51 -8.80 13.52 5.56 0.08 -8.73 16 6 C -0.08 -0.94 5.83 -29.03 -0.17 -1.11 16 7 C -0.17 -2.90 4.38 -104.58 -0.46 -3.36 16 8 C -0.06 -1.05 9.69 -39.61 -0.38 -1.43 16 9 C -0.23 -5.20 9.17 -39.39 -0.36 -5.56 16 10 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 11 O -0.18 -5.19 9.76 0.05 0.00 -5.19 16 12 C -0.39 -11.14 9.49 30.89 0.29 -10.84 16 13 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 14 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 15 N -0.86 -25.65 13.67 55.48 0.76 -24.89 16 16 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 20 C -0.19 -4.18 9.99 -39.39 -0.39 -4.57 16 21 C -0.06 -1.08 9.69 -39.60 -0.38 -1.46 16 22 C 0.03 0.30 8.57 37.61 0.32 0.62 16 23 O -0.37 -3.94 12.38 -35.23 -0.44 -4.37 16 24 C 0.03 0.25 8.50 37.61 0.32 0.57 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.69 8.06 -51.93 -0.42 0.27 16 27 H 0.10 1.41 5.45 -51.93 -0.28 1.13 16 28 H 0.40 2.15 8.63 -40.82 -0.35 1.80 16 29 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 30 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 31 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 33 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 35 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 38 H 0.10 0.58 8.10 -51.93 -0.42 0.16 16 39 H 0.08 0.43 8.11 -51.93 -0.42 0.01 16 LS Contribution 333.18 15.07 5.02 5.02 Total: -1.00 -34.24 333.18 -6.36 -40.60 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -4.97 Total: 5.13 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -1.50 Total: -16.59 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 0.47 Total: -31.61 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.36 Total: -18.29 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.24 -6.36 -40.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870664165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.548 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds