Wall clock time and date at job start Tue Mar 31 2020 06:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46507 * 113.00291 * 2 1 4 4 C 1.34781 * 119.99539 * 48.16926 * 3 2 1 5 5 O 1.21282 * 120.00102 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99728 * 180.02562 * 4 3 2 7 7 C 1.50698 * 109.46930 * 180.02562 * 6 4 3 8 8 C 1.38297 * 119.93202 * 89.99982 * 7 6 4 9 9 C 1.38101 * 120.07230 * 180.02562 * 8 7 6 10 10 C 1.38886 * 119.92536 * 359.97438 * 9 8 7 11 11 O 1.35750 * 120.06440 * 180.02562 * 10 9 8 12 12 C 1.34828 * 117.00075 * 5.53777 * 11 10 9 13 13 H 1.07993 * 120.00518 * 354.94289 * 12 11 10 14 14 C 1.38663 * 119.99751 * 174.94575 * 12 11 10 15 15 N 1.31556 * 120.00220 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99821 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47517 * 59.99414 * 16 14 12 18 18 H 1.48505 * 109.47332 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46989 * 299.99567 * 16 14 12 20 20 C 1.38874 * 119.86623 * 0.27854 * 10 9 8 21 21 C 1.38110 * 119.92772 * 359.48927 * 20 10 9 22 22 C 1.54030 * 113.92798 * 131.92991 * 2 1 3 23 23 O 1.44179 * 85.52007 * 91.66131 * 22 2 1 24 24 C 1.44181 * 93.33610 * 24.19321 * 23 22 2 25 25 H 1.08997 * 109.47183 * 69.66823 * 1 2 3 26 26 H 1.08993 * 109.47422 * 189.66746 * 1 2 3 27 27 H 1.09004 * 109.47267 * 309.66692 * 1 2 3 28 28 H 0.96995 * 120.00045 * 228.18123 * 3 2 1 29 29 H 1.09003 * 109.46768 * 60.00063 * 6 4 3 30 30 H 1.09004 * 109.46918 * 300.00219 * 6 4 3 31 31 H 1.07999 * 119.96698 * 0.02562 * 8 7 6 32 32 H 1.07992 * 120.03608 * 179.97438 * 9 8 7 33 33 H 0.96996 * 120.00178 * 179.97438 * 15 14 12 34 34 H 1.07996 * 120.03745 * 179.72497 * 20 10 9 35 35 H 1.07996 * 119.96227 * 180.23396 * 21 20 10 36 36 H 1.08994 * 113.87052 * 205.80599 * 22 2 1 37 37 H 1.08999 * 113.86383 * 337.51531 * 22 2 1 38 38 H 1.09000 * 113.86553 * 221.65892 * 24 23 22 39 39 H 1.08999 * 113.97897 * 89.97176 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.1024 1.3486 0.0000 4 6 1.6491 2.2730 0.8698 5 8 0.7677 1.9884 1.6527 6 6 2.2376 3.6604 0.8694 7 6 1.5622 4.4928 1.9286 8 6 2.0756 4.5252 3.2123 9 6 1.4586 5.2866 4.1854 10 6 0.3216 6.0207 3.8734 11 8 -0.2868 6.7705 4.8275 12 6 0.3260 6.8512 6.0258 13 1 1.2143 6.2680 6.2184 14 6 -0.1844 7.6830 7.0109 15 7 -1.2663 8.3938 6.7761 16 14 0.6650 7.7954 8.6707 17 1 2.0579 8.2746 8.4826 18 1 -0.0722 8.7468 9.5407 19 1 0.6848 6.4543 9.3084 20 6 -0.1946 5.9820 2.5847 21 6 0.4299 5.2224 1.6149 22 6 2.1546 -0.9408 1.0474 23 8 2.1471 -1.9296 -0.0018 24 6 2.1520 -0.9397 -1.0501 25 1 -0.3633 0.3571 -0.9636 26 1 -0.3634 -1.0130 0.1726 27 1 -0.3634 0.6560 0.7911 28 1 2.8075 1.5761 -0.6260 29 1 2.0842 4.1199 -0.1071 30 1 3.3056 3.6021 1.0798 31 1 2.9599 3.9545 3.4542 32 1 1.8597 5.3111 5.1877 33 1 -1.6235 8.9753 7.4653 34 1 -1.0811 6.5482 2.3402 35 1 0.0311 5.1948 0.6116 36 1 3.1537 -0.6442 1.3666 37 1 1.4916 -1.1762 1.8800 38 1 1.4868 -1.1742 -1.8812 39 1 3.1494 -0.6415 -1.3731 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870664165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:55 Heat of formation + Delta-G solvation = -72.040370 kcal Electronic energy + Delta-G solvation = -22450.203148 eV Core-core repulsion = 18938.090188 eV Total energy + Delta-G solvation = -3512.112960 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.03421 -40.86447 -39.98802 -38.16177 -35.28113 -34.39549 -33.03572 -31.76595 -31.22323 -28.16662 -27.64301 -27.28988 -26.75719 -23.62030 -22.86813 -21.35772 -20.49150 -19.83103 -18.85952 -18.31376 -17.83478 -17.04339 -16.67153 -16.49126 -16.41057 -16.00800 -15.72110 -15.51995 -15.17208 -14.81220 -14.53642 -14.38971 -14.13472 -13.77404 -13.60701 -13.35949 -13.08215 -12.94772 -12.74739 -12.64589 -12.40570 -12.27873 -12.20857 -12.12068 -11.99903 -11.17082 -10.87387 -10.79798 -10.47568 -10.03280 -9.74463 -8.88010 -8.46986 -6.15272 0.63312 0.69417 1.33944 1.45022 1.50653 1.73408 2.18093 2.21224 2.60630 2.85964 3.15366 3.19495 3.53486 3.78843 3.89493 4.06780 4.08895 4.18602 4.23486 4.31909 4.52272 4.55793 4.60883 4.71161 4.74580 4.78862 4.79718 4.82680 4.92834 5.08904 5.11479 5.15431 5.30645 5.32667 5.54771 5.58610 5.73308 5.80006 6.03452 6.25467 6.67807 6.97480 7.40551 7.79426 8.76415 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.030958 B = 0.002922 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.235926 B = 9579.422578 C = 9894.797624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.109 3.891 3 N -0.709 5.709 4 C 0.513 3.487 5 O -0.567 6.567 6 C -0.078 4.078 7 C -0.144 4.144 8 C -0.060 4.060 9 C -0.245 4.245 10 C 0.111 3.889 11 O -0.235 6.235 12 C -0.415 4.415 13 H 0.100 0.900 14 C -0.024 4.024 15 N -0.922 5.922 16 Si 1.019 2.981 17 H -0.255 1.255 18 H -0.271 1.271 19 H -0.259 1.259 20 C -0.208 4.208 21 C -0.057 4.057 22 C 0.025 3.975 23 O -0.397 6.397 24 C 0.046 3.954 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.422 0.578 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.138 0.862 32 H 0.116 0.884 33 H 0.273 0.727 34 H 0.110 0.890 35 H 0.147 0.853 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.330 -15.557 -18.098 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 N -0.366 5.366 4 C 0.301 3.699 5 O -0.445 6.445 6 C -0.118 4.118 7 C -0.145 4.145 8 C -0.078 4.078 9 C -0.265 4.265 10 C 0.061 3.939 11 O -0.142 6.142 12 C -0.491 4.491 13 H 0.117 0.883 14 C -0.221 4.221 15 N -0.561 5.561 16 Si 0.838 3.162 17 H -0.179 1.179 18 H -0.195 1.195 19 H -0.183 1.183 20 C -0.227 4.227 21 C -0.075 4.075 22 C -0.053 4.053 23 O -0.315 6.315 24 C -0.031 4.031 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.260 0.740 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.156 0.844 32 H 0.134 0.866 33 H 0.082 0.918 34 H 0.128 0.872 35 H 0.164 0.836 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.132 0.868 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.361 -15.790 -17.462 26.140 hybrid contribution -0.019 0.589 0.970 1.135 sum 11.342 -15.201 -16.492 25.133 Atomic orbital electron populations 1.21964 0.92464 1.03168 1.03747 1.23708 0.95591 0.82133 0.96389 1.45958 1.41074 1.10718 1.38830 1.21192 0.81789 0.87430 0.79519 1.90699 1.32001 1.81211 1.40557 1.20553 1.01726 0.89541 0.99943 1.19264 0.98309 1.02019 0.94913 1.20935 0.98920 0.95765 0.92158 1.21231 0.99528 1.04521 1.01176 1.19949 0.92470 0.91496 0.89944 1.83935 1.46959 1.62148 1.21123 1.21789 1.11897 1.27434 0.88013 0.88256 1.26614 0.97108 0.94557 1.03823 1.70181 1.22609 1.27038 1.36249 0.84646 0.78148 0.79103 0.74287 1.17932 1.19496 1.18341 1.20446 1.03792 1.07249 0.91246 1.20876 0.94109 0.94058 0.98442 1.24569 1.01383 0.86475 0.92836 1.89708 1.95854 1.28017 1.17937 1.24616 1.02382 0.84110 0.91970 0.90799 0.91287 0.91300 0.73989 0.85080 0.85314 0.84373 0.86627 0.91827 0.87181 0.83557 0.88694 0.90121 0.86820 0.86765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.01 71.98 0.65 -2.40 16 2 C 0.11 1.69 1.35 4.30 0.01 1.69 16 3 N -0.71 -9.13 5.35 -453.39 -2.43 -11.56 16 4 C 0.51 10.83 7.59 87.66 0.67 11.49 16 5 O -0.57 -18.45 13.52 -3.04 -0.04 -18.49 16 6 C -0.08 -1.37 5.83 29.10 0.17 -1.20 16 7 C -0.14 -4.39 4.38 -19.84 -0.09 -4.48 16 8 C -0.06 -2.11 9.69 22.25 0.22 -1.89 16 9 C -0.25 -11.21 9.17 22.39 0.21 -11.00 16 10 C 0.11 5.83 6.65 22.58 0.15 5.98 16 11 O -0.23 -14.74 9.76 -22.72 -0.22 -14.97 16 12 C -0.42 -25.07 9.49 67.92 0.64 -24.43 16 13 H 0.10 5.52 5.20 -2.91 -0.02 5.50 16 14 C -0.02 -1.40 5.49 84.84 0.47 -0.93 16 15 N -0.92 -58.13 13.67 21.62 0.30 -57.83 16 16 Si 1.02 43.95 29.55 68.60 2.03 45.98 16 17 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 20 C -0.21 -9.31 9.99 22.39 0.22 -9.09 16 21 C -0.06 -1.95 9.69 22.25 0.22 -1.74 16 22 C 0.03 0.46 8.57 72.27 0.62 1.08 16 23 O -0.40 -7.34 12.38 -148.98 -1.85 -9.18 16 24 C 0.05 0.47 8.50 72.27 0.61 1.09 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.32 8.06 -2.39 -0.02 1.30 16 27 H 0.07 1.88 5.45 -2.38 -0.01 1.87 16 28 H 0.42 1.92 8.63 -92.71 -0.80 1.12 16 29 H 0.13 1.44 8.09 -2.39 -0.02 1.42 16 30 H 0.13 1.46 8.08 -2.39 -0.02 1.44 16 31 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 32 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 33 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 34 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 35 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 36 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.71 8.10 -2.39 -0.02 1.69 16 38 H 0.11 0.84 8.10 -2.39 -0.02 0.82 16 39 H 0.11 0.51 8.11 -2.39 -0.02 0.49 16 Total: -1.00 -83.40 333.18 2.83 -80.58 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.28 Total: 21.31 kcal Atomic # 6 Polarization: -40.59 SS G_CDS: 4.76 Total: -35.83 kcal Atomic # 7 Polarization: -67.26 SS G_CDS: -2.13 Total: -69.39 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -2.11 Total: -42.64 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -83.40 2.83 -80.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870664165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.537 kcal (2) G-P(sol) polarization free energy of solvation -83.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds