Wall clock time and date at job start Tue Mar 31 2020 06:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 113.07932 * 2 1 4 4 C 1.34767 * 120.00252 * 48.09542 * 3 2 1 5 5 O 1.21285 * 120.00442 * 359.97438 * 4 3 2 6 6 C 1.50709 * 120.00250 * 179.97438 * 4 3 2 7 7 C 1.50698 * 109.47208 * 179.97438 * 6 4 3 8 8 C 1.38315 * 119.96601 * 269.72433 * 7 6 4 9 9 C 1.38283 * 120.13841 * 179.76461 * 8 7 6 10 10 C 1.38125 * 120.06574 * 0.51699 * 9 8 7 11 11 C 1.38851 * 119.92970 * 359.73844 * 10 9 8 12 12 O 1.35759 * 120.06722 * 179.97438 * 11 10 9 13 13 C 1.34833 * 116.99839 * 354.48639 * 12 11 10 14 14 H 1.07996 * 119.99943 * 5.05399 * 13 12 11 15 15 C 1.38647 * 119.99895 * 185.06074 * 13 12 11 16 16 N 1.31561 * 120.00052 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99943 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47372 * 359.97438 * 17 15 13 19 19 H 1.48510 * 109.47057 * 120.00026 * 17 15 13 20 20 H 1.48502 * 109.47124 * 239.99613 * 17 15 13 21 21 C 1.38081 * 119.96191 * 90.00202 * 7 6 4 22 22 C 1.54033 * 113.81821 * 228.08863 * 2 1 3 23 23 O 1.44170 * 85.66354 * 268.28814 * 22 2 1 24 24 C 1.44432 * 93.23139 * 335.92527 * 23 22 2 25 25 H 1.08998 * 109.46945 * 191.90578 * 1 2 3 26 26 H 1.09002 * 109.46970 * 311.90781 * 1 2 3 27 27 H 1.08996 * 109.46540 * 71.90912 * 1 2 3 28 28 H 0.97005 * 119.99896 * 228.08594 * 3 2 1 29 29 H 1.08998 * 109.46690 * 300.00265 * 6 4 3 30 30 H 1.08998 * 109.46858 * 59.99362 * 6 4 3 31 31 H 1.08000 * 119.93233 * 359.97438 * 8 7 6 32 32 H 1.08005 * 119.96556 * 180.24934 * 9 8 7 33 33 H 1.08000 * 120.03120 * 179.76351 * 10 9 8 34 34 H 0.96998 * 119.99964 * 180.02562 * 16 15 13 35 35 H 1.07994 * 120.03770 * 359.95514 * 21 7 6 36 36 H 1.09004 * 113.86411 * 22.50620 * 22 2 1 37 37 H 1.09003 * 113.86578 * 154.07445 * 22 2 1 38 38 H 1.08996 * 113.75038 * 269.91951 * 24 23 22 39 39 H 1.09002 * 114.05833 * 138.26909 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1043 1.3477 0.0000 4 6 1.6514 2.2733 0.8686 5 8 0.7680 1.9906 1.6501 6 6 2.2426 3.6596 0.8690 7 6 1.5660 4.4939 1.9259 8 6 0.4394 5.2307 1.6081 9 6 -0.1871 5.9937 2.5764 10 6 0.3170 6.0306 3.8618 11 6 1.4509 5.2962 4.1826 12 8 1.9491 5.3308 5.4450 13 6 1.3657 6.1848 6.3101 14 1 0.4901 6.7419 6.0112 15 6 1.8901 6.3480 7.5831 16 7 2.9566 5.6691 7.9473 17 14 1.0824 7.5317 8.7813 18 1 -0.0922 8.1679 8.1328 19 1 0.6398 6.7888 9.9887 20 1 2.0579 8.5799 9.1751 21 6 2.0748 4.5265 3.2092 22 6 2.1521 -0.9413 -1.0487 23 8 2.1473 -1.9324 -0.0017 24 6 2.1521 -0.9412 1.0488 25 1 -0.3633 -1.0056 0.2120 26 1 -0.3633 0.6864 0.7648 27 1 -0.3632 0.3191 -0.9769 28 1 2.8107 1.5739 -0.6252 29 1 3.3100 3.5992 1.0813 30 1 2.0919 4.1190 -0.1078 31 1 0.0462 5.2074 0.6025 32 1 -1.0690 6.5648 2.3262 33 1 -0.1706 6.6297 4.6167 34 1 3.3232 5.7829 8.8380 35 1 2.9567 3.9540 3.4557 36 1 1.4877 -1.1752 -1.8805 37 1 3.1503 -0.6446 -1.3706 38 1 3.1511 -0.6457 1.3690 39 1 1.4884 -1.1733 1.8818 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870664234.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:59 Heat of formation + Delta-G solvation = -45.833804 kcal Electronic energy + Delta-G solvation = -22587.256093 eV Core-core repulsion = 19076.279535 eV Total energy + Delta-G solvation = -3510.976558 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.21877 -39.45919 -38.61540 -36.45754 -34.37220 -32.44773 -32.08395 -30.48821 -29.12994 -27.08845 -26.92584 -26.26514 -25.19493 -21.88084 -21.45613 -20.27479 -19.68724 -17.78225 -17.39441 -16.96624 -16.81880 -16.29410 -15.81992 -15.30763 -14.93452 -14.43094 -14.27065 -14.12830 -13.80635 -13.49117 -13.39483 -12.94671 -12.72093 -12.45576 -12.38322 -12.30023 -11.89077 -11.73158 -11.53699 -11.26587 -11.17130 -10.80813 -10.74363 -10.59082 -10.40418 -10.11317 -9.51356 -9.29927 -9.18091 -8.80627 -8.03431 -7.18394 -6.40886 -3.99868 2.11269 2.42365 2.67352 3.05746 3.15751 3.16146 3.21800 3.32932 3.88269 3.99794 4.50581 4.56967 4.75617 4.89791 4.95915 5.08684 5.13684 5.23394 5.24156 5.49678 5.52203 5.53257 5.59017 5.67566 5.69031 5.77978 5.78969 5.95903 6.16949 6.21379 6.36742 6.37028 6.68955 6.94919 7.11047 7.29455 7.38461 7.41084 7.47855 7.86221 8.04398 8.26453 9.05090 9.76067 10.77498 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.025295 B = 0.003218 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.680557 B = 8698.111507 C = 9298.641519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.114 3.886 3 N -0.731 5.731 4 C 0.516 3.484 5 O -0.510 6.510 6 C -0.095 4.095 7 C -0.033 4.033 8 C -0.197 4.197 9 C -0.075 4.075 10 C -0.230 4.230 11 C 0.155 3.845 12 O -0.180 6.180 13 C -0.390 4.390 14 H 0.092 0.908 15 C 0.038 3.962 16 N -0.864 5.864 17 Si 0.940 3.060 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.174 4.174 22 C 0.035 3.965 23 O -0.374 6.374 24 C 0.029 3.971 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.060 0.940 28 H 0.401 0.599 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.126 0.874 34 H 0.269 0.731 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.828 -7.426 -18.390 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.027 3.973 3 N -0.387 5.387 4 C 0.303 3.697 5 O -0.384 6.384 6 C -0.134 4.134 7 C -0.034 4.034 8 C -0.216 4.216 9 C -0.093 4.093 10 C -0.250 4.250 11 C 0.102 3.898 12 O -0.084 6.084 13 C -0.467 4.467 14 H 0.109 0.891 15 C -0.166 4.166 16 N -0.500 5.500 17 Si 0.765 3.235 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.194 4.194 22 C -0.042 4.042 23 O -0.292 6.292 24 C -0.049 4.049 25 H 0.088 0.912 26 H 0.120 0.880 27 H 0.079 0.921 28 H 0.235 0.765 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.144 0.856 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.162 -8.073 -17.474 19.284 hybrid contribution -0.034 0.873 0.264 0.912 sum -1.196 -7.200 -17.210 18.694 Atomic orbital electron populations 1.22056 0.91167 1.04216 1.04098 1.23687 0.96373 0.81770 0.95462 1.46164 1.41218 1.11660 1.39684 1.20820 0.82563 0.86471 0.79798 1.90681 1.29438 1.80274 1.37999 1.20612 1.01162 0.91485 1.00174 1.18638 0.95608 0.96456 0.92696 1.20337 0.98704 1.03747 0.98771 1.20680 0.98125 0.97596 0.92898 1.21178 0.99884 1.06420 0.97495 1.19276 0.91617 0.92982 0.85974 1.83979 1.53934 1.55474 1.15009 1.21365 1.11804 1.20549 0.92938 0.89075 1.25274 0.96175 0.98041 0.97073 1.70052 1.20715 1.39281 1.19911 0.85655 0.78840 0.79240 0.79728 1.19124 1.20177 1.20190 1.19940 1.02882 1.05030 0.91518 1.24381 1.00646 0.86400 0.92796 1.89765 1.95719 1.26773 1.16947 1.24608 1.01288 0.85991 0.92964 0.91163 0.87965 0.92149 0.76455 0.88226 0.88378 0.87990 0.87508 0.85631 0.92157 0.86873 0.88432 0.89784 0.89675 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.05 37.16 0.34 -1.37 16 2 C 0.11 1.12 1.36 -130.74 -0.18 0.95 16 3 N -0.73 -6.87 5.35 -53.29 -0.29 -7.15 16 4 C 0.52 6.90 7.59 -10.99 -0.08 6.81 16 5 O -0.51 -9.15 13.51 5.55 0.08 -9.07 16 6 C -0.09 -1.18 5.83 -29.03 -0.17 -1.35 16 7 C -0.03 -0.60 4.37 -104.65 -0.46 -1.05 16 8 C -0.20 -3.49 9.70 -39.54 -0.38 -3.87 16 9 C -0.07 -1.43 10.04 -39.61 -0.40 -1.82 16 10 C -0.23 -5.19 9.17 -39.40 -0.36 -5.55 16 11 C 0.15 3.86 6.65 -39.11 -0.26 3.60 16 12 O -0.18 -5.27 9.76 0.01 0.00 -5.27 16 13 C -0.39 -11.13 9.49 30.88 0.29 -10.84 16 14 H 0.09 2.42 5.20 -52.49 -0.27 2.14 16 15 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 16 N -0.86 -25.71 13.67 55.48 0.76 -24.95 16 17 Si 0.94 20.86 29.55 -169.99 -5.02 15.83 16 18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 21 C -0.17 -3.78 9.65 -39.39 -0.38 -4.16 16 22 C 0.04 0.27 8.49 37.61 0.32 0.59 16 23 O -0.37 -4.17 12.41 -35.23 -0.44 -4.61 16 24 C 0.03 0.32 8.55 37.61 0.32 0.64 16 25 H 0.07 0.72 8.04 -51.93 -0.42 0.30 16 26 H 0.10 1.43 5.40 -51.93 -0.28 1.15 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.40 2.37 8.63 -40.82 -0.35 2.02 16 29 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 30 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 33 H 0.13 2.82 5.64 -52.49 -0.30 2.53 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.11 2.38 8.06 -52.49 -0.42 1.95 16 36 H 0.10 0.61 8.10 -51.93 -0.42 0.19 16 37 H 0.08 0.48 8.11 -51.93 -0.42 0.05 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.10 1.15 8.10 -51.93 -0.42 0.73 16 LS Contribution 333.15 15.07 5.02 5.02 Total: -1.00 -34.60 333.15 -6.36 -40.95 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.97 Total: 5.70 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -1.50 Total: -16.46 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.47 Total: -32.10 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.36 Total: -18.95 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.60 -6.36 -40.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870664234.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.881 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds