Wall clock time and date at job start Tue Mar 31 2020 06:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46943 * 2 1 4 4 C 1.50701 * 109.46900 * 240.00025 * 2 1 3 5 5 H 1.08001 * 120.00189 * 241.23806 * 4 2 1 6 6 C 1.37880 * 120.00017 * 61.24149 * 4 2 1 7 7 N 1.31506 * 119.99936 * 194.11121 * 6 4 2 8 8 Si 1.86802 * 120.00016 * 14.10868 * 6 4 2 9 9 H 1.48503 * 109.46969 * 84.53392 * 8 6 4 10 10 H 1.48499 * 109.47459 * 204.53586 * 8 6 4 11 11 H 1.48499 * 109.47129 * 324.53569 * 8 6 4 12 12 C 1.53003 * 109.47349 * 120.00097 * 2 1 3 13 13 N 1.46903 * 109.46903 * 299.99784 * 12 2 1 14 14 C 1.46900 * 110.99822 * 179.97438 * 13 12 2 15 15 C 1.50699 * 109.47043 * 180.02562 * 14 13 12 16 16 C 1.38382 * 119.89187 * 90.00326 * 15 14 13 17 17 C 1.38141 * 120.21624 * 179.97438 * 16 15 14 18 18 C 1.38570 * 119.88685 * 0.02562 * 17 16 15 19 19 O 1.35681 * 133.02035 * 179.97438 * 18 17 16 20 20 C 1.34287 * 108.28567 * 180.02562 * 19 18 17 21 21 O 1.21503 * 125.37017 * 179.73737 * 20 19 18 22 22 O 1.34289 * 109.26279 * 359.97438 * 20 19 18 23 23 C 1.35684 * 108.28485 * 0.02562 * 22 20 19 24 24 C 1.38139 * 119.89221 * 269.97716 * 15 14 13 25 25 H 1.09000 * 109.47053 * 309.50964 * 1 2 3 26 26 H 1.09001 * 109.47372 * 69.51714 * 1 2 3 27 27 H 1.09004 * 109.47166 * 189.51900 * 1 2 3 28 28 H 1.09000 * 109.47136 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46965 * 299.99985 * 3 2 1 30 30 H 1.09000 * 109.47190 * 60.00200 * 3 2 1 31 31 H 0.97006 * 120.00039 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47068 * 180.02562 * 12 2 1 33 33 H 1.08998 * 109.47203 * 59.99778 * 12 2 1 34 34 H 1.00901 * 110.99550 * 56.04874 * 13 12 2 35 35 H 1.09002 * 109.47150 * 60.00138 * 14 13 12 36 36 H 1.09008 * 109.47185 * 300.00555 * 14 13 12 37 37 H 1.07998 * 119.89397 * 359.97408 * 16 15 14 38 38 H 1.07999 * 120.05388 * 180.02562 * 17 16 15 39 39 H 1.08000 * 120.05091 * 0.04734 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6366 -1.6001 -1.1316 6 6 1.7204 -0.2246 -2.4826 7 7 1.9115 -0.9751 -3.5454 8 14 1.0264 1.4996 -2.6692 9 1 2.1411 2.4799 -2.7119 10 1 0.2439 1.5847 -3.9285 11 1 0.1425 1.8050 -1.5157 12 6 2.0401 -0.7213 1.2492 13 7 1.5504 -0.0287 2.4487 14 6 2.0210 -0.6952 3.6703 15 6 1.4995 0.0414 4.8771 16 6 0.2812 -0.3142 5.4289 17 6 -0.2030 0.3562 6.5354 18 6 0.5334 1.3884 7.0943 19 8 0.3211 2.2088 8.1540 20 6 1.3679 3.0436 8.2568 21 8 1.4956 3.9112 9.0978 22 8 2.2490 2.7718 7.2805 23 6 1.7595 1.7465 6.5388 24 6 2.2393 1.0690 5.4293 25 1 -0.3633 0.6538 0.7929 26 1 -0.3634 0.3596 -0.9627 27 1 -0.3634 -1.0135 0.1700 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6925 -0.6332 -4.4264 32 1 3.1301 -0.7208 1.2494 33 1 1.6767 -1.7489 1.2493 34 1 0.5439 0.0413 2.4401 35 1 3.1109 -0.6954 3.6873 36 1 1.6572 -1.7227 3.6868 37 1 -0.2929 -1.1184 4.9930 38 1 -1.1539 0.0762 6.9641 39 1 3.1895 1.3446 4.9963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883144195.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:44 Heat of formation + Delta-G solvation = -47.908268 kcal Electronic energy + Delta-G solvation = -22651.498325 eV Core-core repulsion = 19140.431811 eV Total energy + Delta-G solvation = -3511.066514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.34459 -39.52419 -38.26693 -38.21127 -37.15988 -34.30415 -31.88756 -31.23428 -30.27349 -26.41937 -26.24412 -25.11545 -24.38060 -24.10661 -23.59963 -22.45716 -19.32633 -18.81347 -18.52672 -18.32503 -17.29580 -16.15644 -15.97483 -15.46494 -15.37994 -14.72997 -14.57959 -14.53187 -14.51140 -14.18483 -13.75792 -13.39620 -12.90466 -12.78114 -12.51392 -12.20168 -12.13035 -11.91458 -11.88513 -11.84634 -11.47439 -11.01542 -10.36683 -10.13928 -10.07257 -9.93279 -9.39758 -9.06921 -8.97065 -8.61457 -8.41601 -8.07862 -6.13130 -4.09418 0.49464 0.54693 1.64080 1.71060 2.07133 2.96677 3.29201 3.38479 3.42616 3.72534 4.18453 4.29720 4.39772 4.57354 4.66003 4.76396 4.80201 5.20118 5.24312 5.34493 5.48277 5.54985 5.66092 5.86559 5.95734 6.02003 6.09646 6.22997 6.40285 6.55602 6.59558 6.61730 6.68293 6.76157 6.86332 6.94684 7.27126 7.32923 7.49408 7.64660 7.84481 8.48511 8.91178 9.52910 11.00147 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.030464 B = 0.003112 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.905737 B = 8996.246569 C = 9326.940413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 C -0.136 4.136 4 C -0.515 4.515 5 H 0.071 0.929 6 C 0.074 3.926 7 N -0.896 5.896 8 Si 0.888 3.112 9 H -0.287 1.287 10 H -0.308 1.308 11 H -0.248 1.248 12 C 0.084 3.916 13 N -0.686 5.686 14 C 0.094 3.906 15 C -0.048 4.048 16 C -0.090 4.090 17 C -0.073 4.073 18 C 0.007 3.993 19 O -0.237 6.237 20 C 0.591 3.409 21 O -0.419 6.419 22 O -0.234 6.234 23 C 0.014 3.986 24 C -0.053 4.053 25 H 0.027 0.973 26 H 0.054 0.946 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.030 0.970 30 H 0.043 0.957 31 H 0.263 0.737 32 H 0.067 0.933 33 H 0.026 0.974 34 H 0.340 0.660 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.385 0.908 19.834 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.040 3.960 3 C -0.193 4.193 4 C -0.553 4.553 5 H 0.089 0.911 6 C -0.128 4.128 7 N -0.533 5.533 8 Si 0.721 3.279 9 H -0.215 1.215 10 H -0.237 1.237 11 H -0.174 1.174 12 C -0.044 4.044 13 N -0.318 5.318 14 C -0.035 4.035 15 C -0.049 4.049 16 C -0.109 4.109 17 C -0.091 4.091 18 C -0.037 4.037 19 O -0.150 6.150 20 C 0.399 3.601 21 O -0.310 6.310 22 O -0.148 6.148 23 C -0.029 4.029 24 C -0.071 4.071 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.158 0.842 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.166 0.834 38 H 0.164 0.836 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.794 1.848 20.123 20.400 hybrid contribution -0.825 0.379 -0.129 0.917 sum -3.619 2.227 19.994 20.441 Atomic orbital electron populations 1.22306 0.98565 0.99107 1.00223 1.18464 0.91848 0.92598 0.93094 1.22174 1.00439 0.98104 0.98557 1.20846 1.33757 1.12163 0.88504 0.91051 1.24981 0.94711 0.97314 0.95833 1.69959 1.48625 1.35979 0.98747 0.87260 0.79384 0.85537 0.75750 1.21473 1.23740 1.17433 1.22011 0.99653 0.94623 0.88108 1.60698 1.16597 1.53699 1.00789 1.20930 1.01078 0.94440 0.87056 1.19858 0.93814 0.94857 0.96346 1.21081 0.95530 0.99843 0.94436 1.20027 1.00187 0.92773 0.96159 1.19603 0.96812 0.97346 0.89914 1.85246 1.42300 1.42693 1.44801 1.21453 0.76284 0.81303 0.81074 1.91291 1.75193 1.30011 1.34547 1.85273 1.44216 1.46545 1.38727 1.19593 0.93946 0.91838 0.97559 1.19991 1.01896 0.93946 0.91315 0.95431 0.92738 0.94154 0.93575 0.95158 0.93809 0.92684 0.91496 0.95588 0.84170 0.89576 0.93649 0.83400 0.83557 0.83181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 7.24 37.16 0.27 -2.58 16 2 C 0.04 0.86 0.57 -155.66 -0.09 0.77 16 3 C -0.14 -2.81 7.54 37.16 0.28 -2.53 16 4 C -0.51 -13.50 8.62 -34.44 -0.30 -13.80 16 5 H 0.07 2.03 7.99 -52.49 -0.42 1.62 16 6 C 0.07 2.04 5.32 -17.82 -0.09 1.94 16 7 N -0.90 -26.63 13.96 55.43 0.77 -25.86 16 8 Si 0.89 21.41 22.79 -169.99 -3.87 17.53 16 9 H -0.29 -6.95 7.10 56.52 0.40 -6.55 16 10 H -0.31 -7.61 7.11 56.52 0.40 -7.21 16 11 H -0.25 -5.51 4.65 56.52 0.26 -5.25 16 12 C 0.08 1.44 4.57 -3.82 -0.02 1.42 16 13 N -0.69 -9.18 5.71 -115.05 -0.66 -9.84 16 14 C 0.09 0.93 5.81 -4.98 -0.03 0.90 16 15 C -0.05 -0.42 5.39 -104.61 -0.56 -0.98 16 16 C -0.09 -0.65 9.69 -39.56 -0.38 -1.04 16 17 C -0.07 -0.54 10.06 -39.49 -0.40 -0.94 16 18 C 0.01 0.07 7.35 -39.07 -0.29 -0.22 16 19 O -0.24 -2.65 10.79 -31.00 -0.33 -2.99 16 20 C 0.59 7.31 9.67 101.05 0.98 8.28 16 21 O -0.42 -6.10 18.04 -27.22 -0.49 -6.60 16 22 O -0.23 -2.77 10.79 -31.01 -0.33 -3.11 16 23 C 0.01 0.15 7.35 -39.07 -0.29 -0.14 16 24 C -0.05 -0.49 9.71 -39.50 -0.38 -0.88 16 25 H 0.03 0.46 7.06 -51.93 -0.37 0.10 16 26 H 0.05 1.18 4.30 -51.93 -0.22 0.95 16 27 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.03 0.67 2.26 -51.93 -0.12 0.55 16 30 H 0.04 0.81 7.60 -51.93 -0.39 0.41 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.34 4.39 6.99 -39.29 -0.27 4.12 16 35 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 36 H 0.05 0.41 8.08 -51.92 -0.42 -0.01 16 37 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 317.20 15.07 4.78 4.78 Total: -1.00 -30.17 317.20 -6.31 -36.48 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.87 Total: -0.64 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -1.30 Total: -9.77 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.12 Total: -35.69 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -1.16 Total: -12.69 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -3.87 Total: 17.53 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.17 -6.31 -36.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883144195.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.428 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds