Wall clock time and date at job start Tue Mar 31 2020 06:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46943 * 2 1 4 4 C 1.50701 * 109.46900 * 240.00025 * 2 1 3 5 5 H 1.08001 * 120.00189 * 241.23806 * 4 2 1 6 6 C 1.37880 * 120.00017 * 61.24149 * 4 2 1 7 7 N 1.31506 * 119.99936 * 194.11121 * 6 4 2 8 8 Si 1.86802 * 120.00016 * 14.10868 * 6 4 2 9 9 H 1.48503 * 109.46969 * 84.53392 * 8 6 4 10 10 H 1.48499 * 109.47459 * 204.53586 * 8 6 4 11 11 H 1.48499 * 109.47129 * 324.53569 * 8 6 4 12 12 C 1.53003 * 109.47349 * 120.00097 * 2 1 3 13 13 N 1.46903 * 109.46903 * 299.99784 * 12 2 1 14 14 C 1.46900 * 110.99822 * 179.97438 * 13 12 2 15 15 C 1.50699 * 109.47043 * 180.02562 * 14 13 12 16 16 C 1.38382 * 119.89187 * 90.00326 * 15 14 13 17 17 C 1.38141 * 120.21624 * 179.97438 * 16 15 14 18 18 C 1.38570 * 119.88685 * 0.02562 * 17 16 15 19 19 O 1.35681 * 133.02035 * 179.97438 * 18 17 16 20 20 C 1.34287 * 108.28567 * 180.02562 * 19 18 17 21 21 O 1.21503 * 125.37017 * 179.73737 * 20 19 18 22 22 O 1.34289 * 109.26279 * 359.97438 * 20 19 18 23 23 C 1.35684 * 108.28485 * 0.02562 * 22 20 19 24 24 C 1.38139 * 119.89221 * 269.97716 * 15 14 13 25 25 H 1.09000 * 109.47053 * 309.50964 * 1 2 3 26 26 H 1.09001 * 109.47372 * 69.51714 * 1 2 3 27 27 H 1.09004 * 109.47166 * 189.51900 * 1 2 3 28 28 H 1.09000 * 109.47136 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46965 * 299.99985 * 3 2 1 30 30 H 1.09000 * 109.47190 * 60.00200 * 3 2 1 31 31 H 0.97006 * 120.00039 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47068 * 180.02562 * 12 2 1 33 33 H 1.08998 * 109.47203 * 59.99778 * 12 2 1 34 34 H 1.00901 * 110.99550 * 56.04874 * 13 12 2 35 35 H 1.09002 * 109.47150 * 60.00138 * 14 13 12 36 36 H 1.09008 * 109.47185 * 300.00555 * 14 13 12 37 37 H 1.07998 * 119.89397 * 359.97408 * 16 15 14 38 38 H 1.07999 * 120.05388 * 180.02562 * 17 16 15 39 39 H 1.08000 * 120.05091 * 0.04734 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6366 -1.6001 -1.1316 6 6 1.7204 -0.2246 -2.4826 7 7 1.9115 -0.9751 -3.5454 8 14 1.0264 1.4996 -2.6692 9 1 2.1411 2.4799 -2.7119 10 1 0.2439 1.5847 -3.9285 11 1 0.1425 1.8050 -1.5157 12 6 2.0401 -0.7213 1.2492 13 7 1.5504 -0.0287 2.4487 14 6 2.0210 -0.6952 3.6703 15 6 1.4995 0.0414 4.8771 16 6 0.2812 -0.3142 5.4289 17 6 -0.2030 0.3562 6.5354 18 6 0.5334 1.3884 7.0943 19 8 0.3211 2.2088 8.1540 20 6 1.3679 3.0436 8.2568 21 8 1.4956 3.9112 9.0978 22 8 2.2490 2.7718 7.2805 23 6 1.7595 1.7465 6.5388 24 6 2.2393 1.0690 5.4293 25 1 -0.3633 0.6538 0.7929 26 1 -0.3634 0.3596 -0.9627 27 1 -0.3634 -1.0135 0.1700 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6925 -0.6332 -4.4264 32 1 3.1301 -0.7208 1.2494 33 1 1.6767 -1.7489 1.2493 34 1 0.5439 0.0413 2.4401 35 1 3.1109 -0.6954 3.6873 36 1 1.6572 -1.7227 3.6868 37 1 -0.2929 -1.1184 4.9930 38 1 -1.1539 0.0762 6.9641 39 1 3.1895 1.3446 4.9963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883144195.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:43 Heat of formation + Delta-G solvation = -66.834348 kcal Electronic energy + Delta-G solvation = -22652.319021 eV Core-core repulsion = 19140.431811 eV Total energy + Delta-G solvation = -3511.887210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.17581 -40.32615 -39.24310 -39.11116 -38.50497 -35.57039 -33.68235 -32.03614 -31.19758 -27.87610 -27.42760 -26.98034 -25.26419 -25.18846 -24.50054 -23.30594 -20.60065 -19.93470 -19.41217 -19.14339 -18.24371 -17.97374 -17.32584 -16.80321 -16.26128 -15.69207 -15.54678 -15.40152 -15.24865 -15.11834 -14.82331 -14.73950 -14.71636 -14.17349 -13.75497 -13.66500 -13.57960 -13.12036 -12.82983 -12.71867 -12.42685 -12.32019 -12.14929 -11.87333 -11.77234 -11.55217 -10.88914 -10.53285 -10.27894 -10.05129 -9.75764 -9.15208 -8.26188 -6.24261 -0.21652 -0.12773 0.74374 0.85027 1.29169 1.38666 1.42061 1.52075 2.30036 2.38574 3.03240 3.12082 3.39241 3.46754 3.81037 3.94625 4.08671 4.13560 4.30923 4.50525 4.56179 4.64720 4.75455 4.81154 4.87936 4.93044 4.99281 5.01506 5.06355 5.15453 5.28879 5.31668 5.37356 5.42377 5.66239 5.69604 5.80633 5.89276 5.92419 6.20183 6.39787 6.64730 6.84348 7.41466 8.90928 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.030464 B = 0.003112 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.905737 B = 8996.246569 C = 9326.940413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.034 3.966 3 C -0.133 4.133 4 C -0.510 4.510 5 H 0.032 0.968 6 C 0.016 3.984 7 N -0.950 5.950 8 Si 0.941 3.059 9 H -0.290 1.290 10 H -0.320 1.320 11 H -0.210 1.210 12 C 0.098 3.902 13 N -0.685 5.685 14 C 0.096 3.904 15 C -0.049 4.049 16 C -0.076 4.076 17 C -0.062 4.062 18 C -0.005 4.005 19 O -0.237 6.237 20 C 0.595 3.405 21 O -0.451 6.451 22 O -0.242 6.242 23 C -0.007 4.007 24 C -0.055 4.055 25 H 0.063 0.937 26 H 0.033 0.967 27 H 0.045 0.955 28 H 0.038 0.962 29 H 0.017 0.983 30 H 0.071 0.929 31 H 0.261 0.739 32 H 0.056 0.944 33 H 0.022 0.978 34 H 0.346 0.654 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.178 0.822 38 H 0.176 0.824 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.153 1.081 21.643 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.033 3.967 3 C -0.189 4.189 4 C -0.548 4.548 5 H 0.051 0.949 6 C -0.181 4.181 7 N -0.590 5.590 8 Si 0.772 3.228 9 H -0.218 1.218 10 H -0.250 1.250 11 H -0.134 1.134 12 C -0.030 4.030 13 N -0.318 5.318 14 C -0.032 4.032 15 C -0.050 4.050 16 C -0.094 4.094 17 C -0.080 4.080 18 C -0.049 4.049 19 O -0.150 6.150 20 C 0.404 3.596 21 O -0.344 6.344 22 O -0.155 6.155 23 C -0.050 4.050 24 C -0.074 4.074 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.166 0.834 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.196 0.804 38 H 0.193 0.807 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.571 2.011 21.965 22.526 hybrid contribution -0.223 0.164 -0.677 0.731 sum -4.794 2.175 21.288 21.930 Atomic orbital electron populations 1.22205 0.96972 1.00364 1.00339 1.18487 0.93043 0.92749 0.92427 1.22115 1.00085 0.97602 0.99122 1.21270 1.31897 1.10853 0.90789 0.94936 1.25771 0.95732 1.00901 0.95650 1.70108 1.51490 1.38067 0.99322 0.86409 0.79189 0.80862 0.76374 1.21804 1.25018 1.13404 1.21627 0.98949 0.94159 0.88313 1.60553 1.17040 1.53674 1.00530 1.20937 1.01314 0.95173 0.85774 1.19771 0.94485 0.94644 0.96065 1.21423 0.94683 0.99705 0.93595 1.20423 1.00797 0.91236 0.95587 1.20009 0.97154 0.98007 0.89734 1.85219 1.41704 1.42695 1.45387 1.21383 0.76381 0.81062 0.80775 1.91258 1.76021 1.31380 1.35773 1.85233 1.44291 1.47202 1.38787 1.19803 0.94686 0.92201 0.98325 1.20107 1.02249 0.94036 0.91020 0.91826 0.94790 0.93598 0.94317 0.96478 0.90984 0.92987 0.92542 0.95986 0.83424 0.89501 0.91880 0.80443 0.80656 0.82894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.08 7.24 71.98 0.52 -4.56 16 2 C 0.03 1.35 0.57 -52.93 -0.03 1.32 16 3 C -0.13 -5.09 7.54 71.98 0.54 -4.55 16 4 C -0.51 -26.95 8.62 25.60 0.22 -26.73 16 5 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 6 C 0.02 0.91 5.32 84.66 0.45 1.36 16 7 N -0.95 -58.30 13.96 21.45 0.30 -58.00 16 8 Si 0.94 43.83 22.79 68.60 1.56 45.40 16 9 H -0.29 -13.53 7.10 99.48 0.71 -12.82 16 10 H -0.32 -15.41 7.11 99.48 0.71 -14.71 16 11 H -0.21 -8.49 4.65 99.48 0.46 -8.02 16 12 C 0.10 3.14 4.57 86.30 0.39 3.53 16 13 N -0.69 -15.65 5.71 -517.91 -2.96 -18.60 16 14 C 0.10 1.55 5.81 85.56 0.50 2.04 16 15 C -0.05 -0.67 5.39 -19.85 -0.11 -0.78 16 16 C -0.08 -0.72 9.69 22.28 0.22 -0.51 16 17 C -0.06 -0.66 10.06 22.33 0.22 -0.44 16 18 C -0.01 -0.09 7.35 22.60 0.17 0.07 16 19 O -0.24 -4.99 10.79 14.74 0.16 -4.83 16 20 C 0.60 14.54 9.67 113.37 1.10 15.64 16 21 O -0.45 -13.28 18.04 27.43 0.49 -12.78 16 22 O -0.24 -5.60 10.79 14.69 0.16 -5.44 16 23 C -0.01 -0.13 7.35 22.60 0.17 0.03 16 24 C -0.06 -0.90 9.71 22.32 0.22 -0.68 16 25 H 0.06 1.83 7.06 -2.39 -0.02 1.81 16 26 H 0.03 1.35 4.30 -2.39 -0.01 1.34 16 27 H 0.04 1.57 8.12 -2.39 -0.02 1.56 16 28 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.02 0.70 2.26 -2.39 -0.01 0.69 16 30 H 0.07 2.36 7.60 -2.39 -0.02 2.34 16 31 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.35 7.19 6.99 -89.69 -0.63 6.56 16 35 H 0.09 1.42 8.08 -2.39 -0.02 1.40 16 36 H 0.06 0.85 8.08 -2.38 -0.02 0.83 16 37 H 0.18 0.71 8.06 -2.91 -0.02 0.69 16 38 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 39 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -67.76 317.20 4.51 -63.25 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 0.22 Total: 5.25 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 4.57 Total: -14.24 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -2.66 Total: -76.60 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: 0.81 Total: -23.06 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.56 Total: 45.40 kcal Total: -67.76 4.51 -63.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883144195.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.584 kcal (2) G-P(sol) polarization free energy of solvation -67.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds