Wall clock time and date at job start Tue Mar 31 2020 06:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.48668 * 2 1 4 4 C 1.53087 * 109.48145 * 239.97516 * 2 1 3 5 5 C 1.53171 * 109.16626 * 182.40758 * 4 2 1 6 6 C 1.53184 * 109.03606 * 56.97438 * 5 4 2 7 7 C 1.53088 * 109.16252 * 303.02446 * 6 5 4 8 8 H 1.09004 * 109.49155 * 297.61935 * 7 6 5 9 9 C 1.53005 * 109.48153 * 177.59282 * 7 6 5 10 10 S 1.81399 * 109.47445 * 180.02562 * 9 7 6 11 11 O 1.42104 * 110.53977 * 291.62365 * 10 9 7 12 12 O 1.42102 * 110.53976 * 68.37356 * 10 9 7 13 13 N 1.65593 * 104.45079 * 179.97438 * 10 9 7 14 14 C 1.46499 * 119.99833 * 64.99683 * 13 10 9 15 15 C 1.50706 * 109.46798 * 164.99981 * 14 13 10 16 16 H 1.07994 * 120.00508 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99786 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00032 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00059 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46873 * 59.99710 * 19 17 15 21 21 H 1.48501 * 109.47315 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47068 * 300.00383 * 19 17 15 23 23 O 1.42901 * 109.47785 * 120.02654 * 2 1 3 24 24 H 1.08998 * 109.47229 * 299.97113 * 1 2 3 25 25 H 1.09001 * 109.47203 * 59.97034 * 1 2 3 26 26 H 1.09002 * 109.47306 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47169 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47049 * 300.02960 * 3 2 1 29 29 H 1.09001 * 109.47260 * 60.02804 * 3 2 1 30 30 H 1.09006 * 109.51828 * 302.31338 * 4 2 1 31 31 H 1.08994 * 109.52546 * 62.49675 * 4 2 1 32 32 H 1.08995 * 109.54699 * 176.84372 * 5 4 2 33 33 H 1.08998 * 109.54145 * 297.02525 * 5 4 2 34 34 H 1.09003 * 109.52166 * 183.11709 * 6 5 4 35 35 H 1.09001 * 109.52062 * 62.93109 * 6 5 4 36 36 H 1.09001 * 109.46962 * 60.05500 * 9 7 6 37 37 H 1.09004 * 109.46832 * 300.05663 * 9 7 6 38 38 H 0.97001 * 120.00285 * 245.00211 * 13 10 9 39 39 H 1.08996 * 109.47829 * 284.99831 * 14 13 10 40 40 H 1.09000 * 109.47092 * 45.00291 * 14 13 10 41 41 H 0.96998 * 120.00129 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4424 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5711 -0.7708 -1.2122 6 6 4.0177 -1.4600 0.0809 7 6 3.4307 -0.7092 1.2790 8 1 3.8192 0.3091 1.2959 9 6 3.8228 -1.4264 2.5724 10 16 3.1265 -0.5371 3.9919 11 8 3.7604 0.7250 4.1493 12 8 1.7103 -0.6526 4.0068 13 7 3.6208 -1.4101 5.3094 14 6 5.0462 -1.5007 5.6352 15 6 5.2081 -2.0178 7.0415 16 1 4.3364 -2.2556 7.6332 17 6 6.4691 -2.1873 7.5728 18 7 7.5305 -1.8983 6.8522 19 14 6.6698 -2.8289 9.3156 20 1 6.0518 -4.1750 9.4218 21 1 8.1147 -2.9195 9.6465 22 1 6.0024 -1.9017 10.2644 23 8 2.0065 -0.6742 1.1664 24 1 -0.3633 0.5134 0.8902 25 1 -0.3634 0.5143 -0.8897 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1304 1.4421 -0.0005 28 1 1.6768 1.9565 -0.8897 29 1 1.6777 1.9562 0.8902 30 1 1.6443 -1.7374 -1.2709 31 1 1.7148 -0.1843 -2.1398 32 1 3.9391 -1.3325 -2.0707 33 1 3.9689 0.2436 -1.2424 34 1 5.1059 -1.4496 0.1420 35 1 3.6614 -2.4901 0.0864 36 1 4.9091 -1.4530 2.6582 37 1 3.4345 -2.4448 2.5552 38 1 2.9665 -1.8616 5.8653 39 1 5.5355 -2.1819 4.9392 40 1 5.5003 -0.5130 5.5568 41 1 8.4176 -2.0172 7.2261 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885149208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:14 Heat of formation + Delta-G solvation = -139.387579 kcal Electronic energy + Delta-G solvation = -22548.363516 eV Core-core repulsion = 19168.774114 eV Total energy + Delta-G solvation = -3379.589403 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.22115 -36.41745 -35.28599 -34.57986 -34.55469 -33.81076 -32.12931 -30.33243 -27.62354 -26.73046 -26.66729 -23.01690 -22.47276 -21.92720 -19.43002 -18.69197 -17.36920 -16.67183 -16.26041 -15.98964 -15.55414 -15.33805 -15.17596 -14.59282 -14.39437 -13.87959 -13.53854 -13.22740 -13.04674 -12.84750 -12.55038 -12.20635 -12.17644 -12.06032 -12.03138 -11.81267 -11.71744 -11.44581 -11.37424 -11.33263 -11.14547 -11.04083 -10.91692 -10.74275 -10.43055 -10.16884 -10.05002 -9.43701 -9.43327 -8.84866 -8.17916 -6.17875 -4.22088 0.89177 3.27571 3.31827 3.33976 3.40259 3.54430 4.25155 4.35959 4.50450 4.56886 4.61444 4.65253 4.80850 4.83820 5.01489 5.08381 5.14440 5.19307 5.35315 5.38376 5.47316 5.54391 5.59457 5.67329 5.70348 5.77430 5.80872 5.83919 5.97293 5.99581 6.14304 6.23264 6.47054 7.14552 7.24986 7.35197 7.80340 7.87236 8.20042 8.82263 9.42939 10.92675 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.032921 B = 0.003886 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.328517 B = 7203.557243 C = 7608.216094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.110 3.890 3 C -0.188 4.188 4 C -0.142 4.142 5 C -0.126 4.126 6 C -0.141 4.141 7 C 0.099 3.901 8 H 0.075 0.925 9 C -0.632 4.632 10 S 2.615 3.385 11 O -0.964 6.964 12 O -0.962 6.962 13 N -1.110 6.110 14 C 0.242 3.758 15 C -0.529 4.529 16 H 0.065 0.935 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 O -0.365 6.365 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.409 0.591 39 H 0.020 0.980 40 H 0.039 0.961 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.656 1.652 -17.410 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.071 3.929 3 C -0.245 4.245 4 C -0.180 4.180 5 C -0.164 4.164 6 C -0.180 4.180 7 C 0.040 3.960 8 H 0.093 0.907 9 C -0.759 4.759 10 S 2.705 3.295 11 O -0.954 6.954 12 O -0.952 6.952 13 N -0.871 5.871 14 C 0.118 3.882 15 C -0.569 4.569 16 H 0.084 0.916 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.200 1.200 23 O -0.285 6.285 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.164 0.836 37 H 0.156 0.844 38 H 0.243 0.757 39 H 0.037 0.963 40 H 0.056 0.944 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.939 2.446 -17.379 19.696 hybrid contribution 0.714 -1.117 0.695 1.497 sum -8.225 1.329 -16.685 18.649 Atomic orbital electron populations 1.21765 0.92109 1.03081 1.02630 1.21521 0.95085 0.91145 0.85104 1.22548 1.02222 0.96500 1.03249 1.22195 0.96131 1.01712 0.97962 1.21677 0.95679 1.01286 0.97717 1.22143 1.01454 1.00490 0.93884 1.21637 0.82613 0.98596 0.93168 0.90722 1.30708 1.14191 1.15107 1.15902 1.04657 0.74063 0.75356 0.75382 1.93569 1.77981 1.39111 1.84716 1.93541 1.28574 1.86973 1.86117 1.55574 1.17736 1.71376 1.42420 1.19087 0.74018 0.97633 0.97415 1.21178 0.92745 1.44765 0.98191 0.91642 1.24976 0.95610 0.95254 0.98377 1.69918 0.98209 1.47777 1.37152 0.86464 0.77080 0.79416 0.83920 1.20068 1.21111 1.20001 1.88097 1.19441 1.77556 1.43430 0.91250 0.91221 0.91662 0.91677 0.91247 0.91257 0.90904 0.90874 0.91279 0.91367 0.90323 0.90581 0.83612 0.84398 0.75707 0.96267 0.94351 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.85 37.16 0.33 -1.08 16 2 C 0.11 1.26 1.11 -90.57 -0.10 1.16 16 3 C -0.19 -1.98 7.93 37.16 0.29 -1.68 16 4 C -0.14 -1.31 4.92 -26.60 -0.13 -1.44 16 5 C -0.13 -1.14 5.72 -26.55 -0.15 -1.30 16 6 C -0.14 -1.54 5.42 -26.59 -0.14 -1.68 16 7 C 0.10 1.36 2.37 -26.68 -0.06 1.29 16 8 H 0.08 1.00 6.34 -51.93 -0.33 0.67 16 9 C -0.63 -9.41 5.80 37.16 0.22 -9.19 16 10 S 2.62 49.94 5.25 -107.50 -0.56 49.38 16 11 O -0.96 -21.51 17.50 -57.54 -1.01 -22.52 16 12 O -0.96 -19.88 17.41 -61.88 -1.08 -20.95 16 13 N -1.11 -23.13 5.88 -11.66 -0.07 -23.20 16 14 C 0.24 6.01 5.89 -5.19 -0.03 5.98 16 15 C -0.53 -14.35 9.27 -34.43 -0.32 -14.67 16 16 H 0.07 1.70 7.65 -52.49 -0.40 1.30 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 19 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 23 O -0.37 -5.36 8.92 -41.93 -0.37 -5.74 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.67 4.98 -51.93 -0.26 0.41 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.59 6.62 -51.93 -0.34 0.24 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.15 2.01 8.14 -51.92 -0.42 1.58 16 37 H 0.14 1.84 8.14 -51.92 -0.42 1.41 16 38 H 0.41 7.98 8.50 -34.47 -0.29 7.69 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.04 1.04 7.70 -51.93 -0.40 0.64 16 41 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 337.77 15.07 5.09 5.09 Total: -1.00 -33.23 337.77 -9.14 -42.37 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.66 Total: 5.42 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -0.20 Total: -21.02 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.67 Total: -47.89 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -2.46 Total: -49.21 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 49.94 SS G_CDS: -0.56 Total: 49.38 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.23 -9.14 -42.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885149208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.020 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds