Wall clock time and date at job start Tue Mar 31 2020 06:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.48668 * 2 1 4 4 C 1.53087 * 109.48145 * 239.97516 * 2 1 3 5 5 C 1.53171 * 109.16626 * 182.40758 * 4 2 1 6 6 C 1.53184 * 109.03606 * 56.97438 * 5 4 2 7 7 C 1.53088 * 109.16252 * 303.02446 * 6 5 4 8 8 H 1.09004 * 109.49155 * 297.61935 * 7 6 5 9 9 C 1.53005 * 109.48153 * 177.59282 * 7 6 5 10 10 S 1.81399 * 109.47445 * 180.02562 * 9 7 6 11 11 O 1.42104 * 110.53977 * 291.62365 * 10 9 7 12 12 O 1.42102 * 110.53976 * 68.37356 * 10 9 7 13 13 N 1.65593 * 104.45079 * 179.97438 * 10 9 7 14 14 C 1.46499 * 119.99833 * 64.99683 * 13 10 9 15 15 C 1.50706 * 109.46798 * 164.99981 * 14 13 10 16 16 H 1.07994 * 120.00508 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99786 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00032 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00059 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46873 * 59.99710 * 19 17 15 21 21 H 1.48501 * 109.47315 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47068 * 300.00383 * 19 17 15 23 23 O 1.42901 * 109.47785 * 120.02654 * 2 1 3 24 24 H 1.08998 * 109.47229 * 299.97113 * 1 2 3 25 25 H 1.09001 * 109.47203 * 59.97034 * 1 2 3 26 26 H 1.09002 * 109.47306 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47169 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47049 * 300.02960 * 3 2 1 29 29 H 1.09001 * 109.47260 * 60.02804 * 3 2 1 30 30 H 1.09006 * 109.51828 * 302.31338 * 4 2 1 31 31 H 1.08994 * 109.52546 * 62.49675 * 4 2 1 32 32 H 1.08995 * 109.54699 * 176.84372 * 5 4 2 33 33 H 1.08998 * 109.54145 * 297.02525 * 5 4 2 34 34 H 1.09003 * 109.52166 * 183.11709 * 6 5 4 35 35 H 1.09001 * 109.52062 * 62.93109 * 6 5 4 36 36 H 1.09001 * 109.46962 * 60.05500 * 9 7 6 37 37 H 1.09004 * 109.46832 * 300.05663 * 9 7 6 38 38 H 0.97001 * 120.00285 * 245.00211 * 13 10 9 39 39 H 1.08996 * 109.47829 * 284.99831 * 14 13 10 40 40 H 1.09000 * 109.47092 * 45.00291 * 14 13 10 41 41 H 0.96998 * 120.00129 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4424 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5711 -0.7708 -1.2122 6 6 4.0177 -1.4600 0.0809 7 6 3.4307 -0.7092 1.2790 8 1 3.8192 0.3091 1.2959 9 6 3.8228 -1.4264 2.5724 10 16 3.1265 -0.5371 3.9919 11 8 3.7604 0.7250 4.1493 12 8 1.7103 -0.6526 4.0068 13 7 3.6208 -1.4101 5.3094 14 6 5.0462 -1.5007 5.6352 15 6 5.2081 -2.0178 7.0415 16 1 4.3364 -2.2556 7.6332 17 6 6.4691 -2.1873 7.5728 18 7 7.5305 -1.8983 6.8522 19 14 6.6698 -2.8289 9.3156 20 1 6.0518 -4.1750 9.4218 21 1 8.1147 -2.9195 9.6465 22 1 6.0024 -1.9017 10.2644 23 8 2.0065 -0.6742 1.1664 24 1 -0.3633 0.5134 0.8902 25 1 -0.3634 0.5143 -0.8897 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1304 1.4421 -0.0005 28 1 1.6768 1.9565 -0.8897 29 1 1.6777 1.9562 0.8902 30 1 1.6443 -1.7374 -1.2709 31 1 1.7148 -0.1843 -2.1398 32 1 3.9391 -1.3325 -2.0707 33 1 3.9689 0.2436 -1.2424 34 1 5.1059 -1.4496 0.1420 35 1 3.6614 -2.4901 0.0864 36 1 4.9091 -1.4530 2.6582 37 1 3.4345 -2.4448 2.5552 38 1 2.9665 -1.8616 5.8653 39 1 5.5355 -2.1819 4.9392 40 1 5.5003 -0.5130 5.5568 41 1 8.4176 -2.0172 7.2261 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885149208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:13 Heat of formation + Delta-G solvation = -163.694866 kcal Electronic energy + Delta-G solvation = -22549.417559 eV Core-core repulsion = 19168.774114 eV Total energy + Delta-G solvation = -3380.643446 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.12338 -38.07484 -36.94202 -36.45485 -35.50318 -34.66756 -34.12181 -31.35701 -28.71847 -28.43285 -27.56376 -24.47459 -23.93652 -22.83091 -20.34022 -20.28808 -19.15085 -17.92275 -17.70516 -17.40143 -17.05123 -16.64397 -16.37032 -16.00485 -15.43313 -15.19948 -14.75503 -14.61207 -14.14526 -14.11317 -13.96958 -13.63088 -13.54133 -13.16199 -13.08135 -13.01337 -12.97769 -12.89855 -12.73633 -12.65840 -12.53491 -12.30633 -12.08004 -11.94246 -11.88238 -11.56344 -11.43360 -11.07229 -10.81540 -10.36442 -10.03590 -8.25892 -6.37674 -0.63503 1.44431 1.47052 1.54805 1.92383 2.41358 2.45709 2.83482 3.08915 3.32585 3.48782 3.74037 3.80034 3.83906 3.96615 4.02469 4.16320 4.28673 4.35178 4.57943 4.61621 4.62775 4.66443 4.78377 4.86403 4.90714 5.01194 5.02724 5.09702 5.14079 5.22032 5.25524 5.30413 5.35118 5.47183 5.73432 5.99644 6.21731 6.31292 6.76043 7.31904 8.85098 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.032921 B = 0.003886 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.328517 B = 7203.557243 C = 7608.216094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.095 3.905 3 C -0.190 4.190 4 C -0.137 4.137 5 C -0.125 4.125 6 C -0.139 4.139 7 C 0.090 3.910 8 H 0.072 0.928 9 C -0.608 4.608 10 S 2.615 3.385 11 O -1.005 7.005 12 O -0.981 6.981 13 N -1.112 6.112 14 C 0.251 3.749 15 C -0.554 4.554 16 H 0.070 0.930 17 C 0.010 3.990 18 N -0.925 5.925 19 Si 0.972 3.028 20 H -0.264 1.264 21 H -0.280 1.280 22 H -0.272 1.272 23 O -0.393 6.393 24 H 0.049 0.951 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.414 0.586 39 H 0.023 0.977 40 H 0.009 0.991 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.677 0.640 -18.939 20.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.057 3.943 3 C -0.247 4.247 4 C -0.174 4.174 5 C -0.163 4.163 6 C -0.178 4.178 7 C 0.030 3.970 8 H 0.090 0.910 9 C -0.740 4.740 10 S 2.711 3.289 11 O -0.995 6.995 12 O -0.971 6.971 13 N -0.872 5.872 14 C 0.126 3.874 15 C -0.593 4.593 16 H 0.088 0.912 17 C -0.190 4.190 18 N -0.564 5.564 19 Si 0.796 3.204 20 H -0.188 1.188 21 H -0.206 1.206 22 H -0.197 1.197 23 O -0.314 6.314 24 H 0.068 0.932 25 H 0.117 0.883 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.115 0.885 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.178 0.822 37 H 0.177 0.823 38 H 0.248 0.752 39 H 0.041 0.959 40 H 0.027 0.973 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.002 1.458 -18.864 20.952 hybrid contribution 0.666 -0.774 1.071 1.480 sum -8.335 0.684 -17.793 19.661 Atomic orbital electron populations 1.21822 0.91592 1.03111 1.03116 1.21879 0.95673 0.91537 0.85191 1.22582 1.02248 0.96292 1.03573 1.22170 0.96164 1.01658 0.97456 1.21716 0.95606 1.01719 0.97246 1.22157 1.01932 1.00341 0.93346 1.21800 0.82912 0.98826 0.93420 0.90993 1.30477 1.14704 1.15303 1.13475 1.04465 0.73553 0.74825 0.76047 1.93512 1.78358 1.41873 1.85747 1.93511 1.29752 1.87163 1.86718 1.55422 1.16216 1.71451 1.44116 1.18758 0.75818 0.95817 0.96968 1.21605 0.93290 1.45018 0.99391 0.91162 1.25868 0.95256 0.95316 1.02579 1.70024 0.98709 1.48598 1.39022 0.85403 0.77222 0.79150 0.78661 1.18826 1.20558 1.19736 1.88061 1.19707 1.78234 1.45418 0.93227 0.88283 0.91847 0.91683 0.88532 0.93349 0.90977 0.88465 0.89227 0.90879 0.89275 0.90274 0.82211 0.82276 0.75211 0.95887 0.97310 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.85 71.98 0.64 -2.03 16 2 C 0.10 2.04 1.11 -10.76 -0.01 2.02 16 3 C -0.19 -3.77 7.93 71.98 0.57 -3.20 16 4 C -0.14 -2.10 4.92 30.68 0.15 -1.95 16 5 C -0.13 -1.88 5.72 30.71 0.18 -1.70 16 6 C -0.14 -2.68 5.42 30.69 0.17 -2.51 16 7 C 0.09 2.36 2.37 30.63 0.07 2.43 16 8 H 0.07 1.91 6.34 -2.38 -0.02 1.89 16 9 C -0.61 -17.55 5.80 71.98 0.42 -17.13 16 10 S 2.61 101.99 5.25 -56.49 -0.30 101.69 16 11 O -1.00 -46.60 17.50 -127.65 -2.23 -48.84 16 12 O -0.98 -41.42 17.41 -123.50 -2.15 -43.57 16 13 N -1.11 -47.24 5.88 -190.79 -1.12 -48.36 16 14 C 0.25 12.73 5.89 85.64 0.50 13.23 16 15 C -0.55 -30.23 9.27 25.60 0.24 -30.00 16 16 H 0.07 3.66 7.65 -2.91 -0.02 3.64 16 17 C 0.01 0.54 5.46 84.66 0.46 1.01 16 18 N -0.92 -52.97 13.29 21.45 0.28 -52.68 16 19 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 20 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 21 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 23 O -0.39 -11.28 8.92 -142.57 -1.27 -12.55 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.27 4.98 -2.39 -0.01 1.26 16 28 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.04 6.62 -2.39 -0.02 1.02 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.16 4.22 8.14 -2.39 -0.02 4.20 16 37 H 0.16 3.96 8.14 -2.39 -0.02 3.94 16 38 H 0.41 16.43 8.50 -96.75 -0.82 15.61 16 39 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.01 0.50 7.70 -2.39 -0.02 0.48 16 41 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -72.00 337.77 -1.19 -73.18 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.19 Total: 26.42 kcal Atomic # 6 Polarization: -43.22 SS G_CDS: 3.38 Total: -39.83 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -0.84 Total: -101.05 kcal Atomic # 8 Polarization: -99.30 SS G_CDS: -5.66 Total: -104.96 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: 101.99 SS G_CDS: -0.30 Total: 101.69 kcal Total: -72.00 -1.19 -73.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885149208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.510 kcal (2) G-P(sol) polarization free energy of solvation -71.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds