Wall clock time and date at job start Tue Mar 31 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34710 * 116.99531 * 2 1 4 4 O 1.21469 * 120.00145 * 359.97438 * 3 2 1 5 5 C 1.47741 * 119.99883 * 180.02562 * 3 2 1 6 6 C 1.39666 * 120.11632 * 179.97438 * 5 3 2 7 7 C 1.37975 * 119.98784 * 180.02562 * 6 5 3 8 8 C 1.50693 * 119.88165 * 180.02562 * 7 6 5 9 9 C 1.38258 * 120.22940 * 0.02562 * 7 6 5 10 10 C 1.38959 * 120.23498 * 0.02562 * 9 7 6 11 11 N 1.39959 * 119.99539 * 180.02562 * 10 9 7 12 12 C 1.34778 * 119.99623 * 144.88991 * 11 10 9 13 13 O 1.21285 * 120.00388 * 4.58345 * 12 11 10 14 14 C 1.50703 * 119.99936 * 184.57762 * 12 11 10 15 15 H 1.09001 * 109.46563 * 60.00104 * 14 12 11 16 16 C 1.52999 * 109.47215 * 300.00782 * 14 12 11 17 17 C 1.50695 * 109.47186 * 180.02562 * 14 12 11 18 18 H 1.07996 * 120.00121 * 25.09732 * 17 14 12 19 19 C 1.37878 * 119.99759 * 205.09525 * 17 14 12 20 20 N 1.31520 * 119.99841 * 185.01507 * 19 17 14 21 21 Si 1.86795 * 120.00388 * 5.01262 * 19 17 14 22 22 H 1.48505 * 109.47191 * 94.94915 * 21 19 17 23 23 H 1.48498 * 109.47275 * 214.95036 * 21 19 17 24 24 H 1.48504 * 109.46824 * 334.95233 * 21 19 17 25 25 C 1.38621 * 120.00765 * 359.97438 * 10 9 7 26 26 H 1.09004 * 109.46702 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47082 * 299.99928 * 1 2 3 28 28 H 1.09001 * 109.47225 * 60.00167 * 1 2 3 29 29 H 1.07995 * 120.00404 * 0.05070 * 6 5 3 30 30 H 1.08997 * 109.47493 * 270.00292 * 8 7 6 31 31 H 1.09003 * 109.47654 * 30.00333 * 8 7 6 32 32 H 1.09005 * 109.47052 * 150.00066 * 8 7 6 33 33 H 1.07995 * 119.88466 * 180.27037 * 9 7 6 34 34 H 0.96991 * 120.00062 * 324.88816 * 11 10 9 35 35 H 1.09000 * 109.47045 * 185.00449 * 16 14 12 36 36 H 1.09004 * 109.46934 * 304.99873 * 16 14 12 37 37 H 1.08996 * 109.47624 * 64.99868 * 16 14 12 38 38 H 0.97004 * 120.00238 * 180.02562 * 20 19 17 39 39 H 1.08000 * 120.11534 * 179.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5389 1.2777 -0.0006 6 6 4.1754 2.5209 -0.0011 7 6 5.5534 2.5901 -0.0022 8 6 6.2377 3.9327 -0.0022 9 6 6.3085 1.4320 -0.0033 10 6 5.6850 0.1901 -0.0038 11 7 6.4543 -0.9791 -0.0043 12 6 6.0270 -2.0671 0.6665 13 8 4.9383 -2.0613 1.2010 14 6 6.9020 -3.2912 0.7524 15 1 7.8414 -3.0326 1.2410 16 6 7.1872 -3.8141 -0.6569 17 6 6.1970 -4.3576 1.5503 18 1 5.1188 -4.3625 1.6109 19 6 6.9287 -5.3269 2.2031 20 7 6.3128 -6.3136 2.8170 21 14 8.7945 -5.2390 2.2154 22 1 9.2500 -4.5610 3.4556 23 1 9.3552 -6.6132 2.1680 24 1 9.2617 -4.4726 1.0322 25 6 4.3012 0.1092 -0.0027 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.5891 3.4278 -0.0003 30 1 6.4019 4.2569 -1.0298 31 1 5.6103 4.6604 0.5125 32 1 7.1961 3.8521 0.5109 33 1 7.3868 1.4926 0.0003 34 1 7.2949 -1.0063 -0.4875 35 1 7.7449 -4.7483 -0.5918 36 1 6.2454 -3.9887 -1.1771 37 1 7.7744 -3.0779 -1.2057 38 1 6.8275 -6.9955 3.2766 39 1 3.8148 -0.8551 -0.0036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885559040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:41 Heat of formation + Delta-G solvation = -99.847508 kcal Electronic energy + Delta-G solvation = -22819.724923 eV Core-core repulsion = 19306.406155 eV Total energy + Delta-G solvation = -3513.318768 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.68528 -39.86831 -38.31118 -36.38791 -34.54808 -33.86696 -32.77739 -31.44779 -29.63557 -27.93511 -26.87824 -25.29538 -24.15578 -23.56776 -21.26155 -20.68313 -19.38480 -17.86790 -17.19927 -17.05032 -16.33045 -16.25590 -16.13233 -15.57501 -15.13854 -14.42666 -14.09112 -13.89187 -13.77852 -13.41079 -13.30642 -13.06457 -12.68769 -12.41362 -12.28923 -12.13828 -12.05286 -11.71623 -11.65262 -11.51976 -11.18467 -10.79559 -10.72555 -10.58261 -10.48807 -10.03997 -9.83429 -9.22990 -8.97568 -8.74742 -8.61878 -7.98708 -6.12350 -4.12886 0.68649 1.34190 2.50132 2.70753 3.18089 3.25866 3.29404 3.35234 3.46359 3.83417 4.32771 4.62274 4.72155 5.05632 5.07868 5.10073 5.15903 5.17423 5.19835 5.36328 5.45204 5.48857 5.57754 5.65512 5.72515 5.94024 6.03710 6.20291 6.27279 6.32864 6.39131 6.41681 6.45394 6.53823 6.73668 7.08403 7.10132 7.44573 7.74271 7.86018 8.44558 8.84556 9.04933 9.46144 11.00482 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016794 B = 0.004410 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.887875 B = 6348.205315 C = 7642.919962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.346 6.346 3 C 0.514 3.486 4 O -0.514 6.514 5 C -0.109 4.109 6 C -0.082 4.082 7 C -0.082 4.082 8 C -0.110 4.110 9 C -0.119 4.119 10 C 0.153 3.847 11 N -0.690 5.690 12 C 0.520 3.480 13 O -0.504 6.504 14 C -0.001 4.001 15 H 0.057 0.943 16 C -0.137 4.137 17 C -0.503 4.503 18 H 0.090 0.910 19 C 0.074 3.926 20 N -0.892 5.892 21 Si 0.868 3.132 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.260 1.260 25 C -0.072 4.072 26 H 0.104 0.896 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.134 0.866 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.131 0.869 34 H 0.408 0.592 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.027 0.973 38 H 0.265 0.735 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.409 16.746 -8.784 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.261 6.261 3 C 0.360 3.640 4 O -0.404 6.404 5 C -0.111 4.111 6 C -0.101 4.101 7 C -0.083 4.083 8 C -0.167 4.167 9 C -0.140 4.140 10 C 0.057 3.943 11 N -0.337 5.337 12 C 0.310 3.690 13 O -0.376 6.376 14 C -0.023 4.023 15 H 0.075 0.925 16 C -0.195 4.195 17 C -0.541 4.541 18 H 0.108 0.892 19 C -0.129 4.129 20 N -0.529 5.529 21 Si 0.695 3.305 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.184 1.184 25 C -0.092 4.092 26 H 0.122 0.878 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.152 0.848 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.148 0.852 34 H 0.244 0.756 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.392 16.727 -8.230 18.694 hybrid contribution 1.260 -0.104 -0.040 1.264 sum -0.133 16.623 -8.270 18.567 Atomic orbital electron populations 1.23295 0.76057 1.03985 1.02315 1.86649 1.23461 1.32242 1.83791 1.21203 0.89139 0.81432 0.72225 1.90792 1.66870 1.36109 1.46613 1.18929 0.88917 0.94537 1.08673 1.20977 0.93847 0.96461 0.98803 1.19535 0.92822 0.95310 1.00637 1.20757 1.00410 0.93029 1.02456 1.21068 1.00177 0.90613 1.02155 1.17775 0.90788 0.86682 0.99013 1.44135 1.24935 1.11210 1.53377 1.21968 0.88097 0.83544 0.75362 1.90606 1.21646 1.81423 1.43891 1.19361 0.95708 0.90993 0.96206 0.92480 1.22038 1.00515 1.00377 0.96585 1.20775 0.96077 1.07803 1.29452 0.89210 1.24984 0.98053 0.94999 0.94827 1.69890 1.35744 1.12535 1.34735 0.87016 0.86688 0.77866 0.78977 1.20307 1.21055 1.18429 1.21735 0.92543 0.99414 0.95545 0.87786 0.91845 0.91976 0.84797 0.91025 0.91303 0.91313 0.85154 0.75616 0.92197 0.92941 0.95437 0.92482 0.82461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.35 -5.35 9.81 -40.52 -0.40 -5.75 16 3 C 0.51 8.20 7.90 34.61 0.27 8.48 16 4 O -0.51 -8.60 16.13 -19.24 -0.31 -8.91 16 5 C -0.11 -1.68 5.87 -105.00 -0.62 -2.29 16 6 C -0.08 -1.07 9.24 -39.15 -0.36 -1.43 16 7 C -0.08 -0.94 5.87 -104.71 -0.61 -1.55 16 8 C -0.11 -0.87 10.00 36.00 0.36 -0.51 16 9 C -0.12 -1.44 9.61 -39.31 -0.38 -1.82 16 10 C 0.15 2.33 6.29 -83.74 -0.53 1.81 16 11 N -0.69 -10.86 5.26 -9.89 -0.05 -10.91 16 12 C 0.52 10.80 6.99 -10.98 -0.08 10.72 16 13 O -0.50 -12.34 13.06 5.55 0.07 -12.27 16 14 C 0.00 -0.02 2.18 -92.93 -0.20 -0.22 16 15 H 0.06 1.21 5.72 -51.93 -0.30 0.91 16 16 C -0.14 -2.57 8.61 37.16 0.32 -2.25 16 17 C -0.50 -13.89 8.52 -34.44 -0.29 -14.19 16 18 H 0.09 2.84 7.34 -52.49 -0.39 2.45 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 20 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 21 Si 0.87 20.01 26.35 -169.99 -4.48 15.53 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.26 -5.39 5.97 56.52 0.34 -5.05 16 25 C -0.07 -1.21 8.26 -38.96 -0.32 -1.53 16 26 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.13 1.59 7.64 -52.49 -0.40 1.19 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.41 4.99 8.21 -40.82 -0.34 4.65 16 35 H 0.06 1.16 6.90 -51.93 -0.36 0.81 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.03 0.40 7.61 -51.93 -0.40 0.00 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.16 3.03 5.77 -52.49 -0.30 2.73 16 LS Contribution 332.56 15.07 5.01 5.01 Total: -1.00 -33.65 332.56 -5.90 -39.55 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.05 Total: 5.12 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -1.47 Total: -1.33 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.72 Total: -36.94 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.64 Total: -26.93 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.48 Total: 15.53 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.65 -5.90 -39.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885559040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.302 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds