Wall clock time and date at job start Tue Mar 31 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34710 * 116.99531 * 2 1 4 4 O 1.21469 * 120.00145 * 359.97438 * 3 2 1 5 5 C 1.47741 * 119.99883 * 180.02562 * 3 2 1 6 6 C 1.39666 * 120.11632 * 179.97438 * 5 3 2 7 7 C 1.37975 * 119.98784 * 180.02562 * 6 5 3 8 8 C 1.50693 * 119.88165 * 180.02562 * 7 6 5 9 9 C 1.38258 * 120.22940 * 0.02562 * 7 6 5 10 10 C 1.38959 * 120.23498 * 0.02562 * 9 7 6 11 11 N 1.39959 * 119.99539 * 180.02562 * 10 9 7 12 12 C 1.34778 * 119.99623 * 144.88991 * 11 10 9 13 13 O 1.21285 * 120.00388 * 4.58345 * 12 11 10 14 14 C 1.50703 * 119.99936 * 184.57762 * 12 11 10 15 15 H 1.09001 * 109.46563 * 60.00104 * 14 12 11 16 16 C 1.52999 * 109.47215 * 300.00782 * 14 12 11 17 17 C 1.50695 * 109.47186 * 180.02562 * 14 12 11 18 18 H 1.07996 * 120.00121 * 25.09732 * 17 14 12 19 19 C 1.37878 * 119.99759 * 205.09525 * 17 14 12 20 20 N 1.31520 * 119.99841 * 185.01507 * 19 17 14 21 21 Si 1.86795 * 120.00388 * 5.01262 * 19 17 14 22 22 H 1.48505 * 109.47191 * 94.94915 * 21 19 17 23 23 H 1.48498 * 109.47275 * 214.95036 * 21 19 17 24 24 H 1.48504 * 109.46824 * 334.95233 * 21 19 17 25 25 C 1.38621 * 120.00765 * 359.97438 * 10 9 7 26 26 H 1.09004 * 109.46702 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47082 * 299.99928 * 1 2 3 28 28 H 1.09001 * 109.47225 * 60.00167 * 1 2 3 29 29 H 1.07995 * 120.00404 * 0.05070 * 6 5 3 30 30 H 1.08997 * 109.47493 * 270.00292 * 8 7 6 31 31 H 1.09003 * 109.47654 * 30.00333 * 8 7 6 32 32 H 1.09005 * 109.47052 * 150.00066 * 8 7 6 33 33 H 1.07995 * 119.88466 * 180.27037 * 9 7 6 34 34 H 0.96991 * 120.00062 * 324.88816 * 11 10 9 35 35 H 1.09000 * 109.47045 * 185.00449 * 16 14 12 36 36 H 1.09004 * 109.46934 * 304.99873 * 16 14 12 37 37 H 1.08996 * 109.47624 * 64.99868 * 16 14 12 38 38 H 0.97004 * 120.00238 * 180.02562 * 20 19 17 39 39 H 1.08000 * 120.11534 * 179.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5389 1.2777 -0.0006 6 6 4.1754 2.5209 -0.0011 7 6 5.5534 2.5901 -0.0022 8 6 6.2377 3.9327 -0.0022 9 6 6.3085 1.4320 -0.0033 10 6 5.6850 0.1901 -0.0038 11 7 6.4543 -0.9791 -0.0043 12 6 6.0270 -2.0671 0.6665 13 8 4.9383 -2.0613 1.2010 14 6 6.9020 -3.2912 0.7524 15 1 7.8414 -3.0326 1.2410 16 6 7.1872 -3.8141 -0.6569 17 6 6.1970 -4.3576 1.5503 18 1 5.1188 -4.3625 1.6109 19 6 6.9287 -5.3269 2.2031 20 7 6.3128 -6.3136 2.8170 21 14 8.7945 -5.2390 2.2154 22 1 9.2500 -4.5610 3.4556 23 1 9.3552 -6.6132 2.1680 24 1 9.2617 -4.4726 1.0322 25 6 4.3012 0.1092 -0.0027 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.5891 3.4278 -0.0003 30 1 6.4019 4.2569 -1.0298 31 1 5.6103 4.6604 0.5125 32 1 7.1961 3.8521 0.5109 33 1 7.3868 1.4926 0.0003 34 1 7.2949 -1.0063 -0.4875 35 1 7.7449 -4.7483 -0.5918 36 1 6.2454 -3.9887 -1.1771 37 1 7.7744 -3.0779 -1.2057 38 1 6.8275 -6.9955 3.2766 39 1 3.8148 -0.8551 -0.0036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885559040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:41 Heat of formation + Delta-G solvation = -122.874923 kcal Electronic energy + Delta-G solvation = -22820.723467 eV Core-core repulsion = 19306.406155 eV Total energy + Delta-G solvation = -3514.317312 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.90382 -41.22274 -39.59496 -37.60514 -35.91528 -35.72488 -33.84845 -33.31454 -30.85531 -28.90566 -27.75645 -27.18273 -25.28729 -25.09443 -22.61883 -21.85151 -20.85717 -19.14120 -19.01984 -18.36557 -17.71356 -17.47819 -17.31462 -16.90514 -16.38792 -16.23802 -15.47119 -15.20973 -14.85247 -14.72809 -14.46640 -14.26193 -14.08818 -13.99637 -13.29596 -13.20268 -13.08921 -12.94333 -12.90829 -12.73422 -12.63351 -12.50375 -12.20555 -11.91030 -11.79399 -11.64710 -11.32495 -11.22139 -10.73216 -10.49345 -9.86279 -9.19985 -8.25251 -6.33008 -0.43312 0.23049 1.31766 1.39736 1.41790 1.53262 1.63448 1.80422 2.14275 2.38565 2.70352 3.10503 3.52749 3.79815 4.01603 4.10681 4.16449 4.19107 4.24705 4.29667 4.31296 4.42855 4.58898 4.69092 4.72086 4.81986 4.86373 4.94102 5.09189 5.14349 5.17209 5.21641 5.27886 5.42547 5.50273 5.50996 5.60254 5.91365 6.24869 6.54506 6.58628 6.81450 7.26567 7.38060 8.92542 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016794 B = 0.004410 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.887875 B = 6348.205315 C = 7642.919962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.511 3.489 4 O -0.528 6.528 5 C -0.126 4.126 6 C -0.078 4.078 7 C -0.072 4.072 8 C -0.108 4.108 9 C -0.099 4.099 10 C 0.131 3.869 11 N -0.666 5.666 12 C 0.520 3.480 13 O -0.557 6.557 14 C -0.004 4.004 15 H 0.079 0.921 16 C -0.132 4.132 17 C -0.514 4.514 18 H 0.024 0.976 19 C 0.007 3.993 20 N -0.953 5.953 21 Si 0.944 3.056 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.211 1.211 25 C -0.096 4.096 26 H 0.124 0.876 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.146 0.854 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.171 0.829 34 H 0.429 0.571 35 H 0.056 0.944 36 H 0.038 0.962 37 H 0.082 0.918 38 H 0.267 0.733 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.457 19.869 -10.348 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.283 6.283 3 C 0.358 3.642 4 O -0.420 6.420 5 C -0.128 4.128 6 C -0.097 4.097 7 C -0.072 4.072 8 C -0.165 4.165 9 C -0.119 4.119 10 C 0.036 3.964 11 N -0.314 5.314 12 C 0.310 3.690 13 O -0.432 6.432 14 C -0.025 4.025 15 H 0.097 0.903 16 C -0.190 4.190 17 C -0.552 4.552 18 H 0.042 0.958 19 C -0.190 4.190 20 N -0.593 5.593 21 Si 0.766 3.234 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.132 1.132 25 C -0.117 4.117 26 H 0.142 0.858 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.164 0.836 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.188 0.812 34 H 0.269 0.731 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.496 19.904 -9.857 22.350 hybrid contribution -0.117 -0.986 0.435 1.084 sum 2.379 18.918 -9.422 21.268 Atomic orbital electron populations 1.23603 0.74085 1.05649 1.03097 1.86648 1.25673 1.32437 1.83589 1.21433 0.89650 0.81318 0.71845 1.90760 1.67253 1.36305 1.47643 1.19044 0.88577 0.95189 1.09998 1.21269 0.95059 0.95715 0.97627 1.20009 0.92026 0.97045 0.98159 1.20869 1.00922 0.90591 1.04083 1.21435 1.02108 0.88949 0.99411 1.17920 0.90114 0.87514 1.00812 1.43614 1.25410 1.10115 1.52219 1.21699 0.87202 0.84543 0.75519 1.90612 1.23723 1.82427 1.46479 1.19330 0.95821 0.89957 0.97426 0.90289 1.21931 1.00848 1.01666 0.94581 1.20931 0.93619 1.10013 1.30651 0.95782 1.26066 1.04849 0.94047 0.94032 1.70094 1.38523 1.14013 1.36628 0.85812 0.78265 0.78468 0.80880 1.19983 1.21214 1.13237 1.21486 0.93833 0.98400 0.97944 0.85806 0.91482 0.90756 0.83603 0.89086 0.90506 0.89478 0.81205 0.73136 0.92532 0.94249 0.89923 0.92463 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.56 113.37 1.20 1.87 16 2 O -0.37 -12.17 9.81 -56.20 -0.55 -12.73 16 3 C 0.51 16.96 7.90 70.33 0.56 17.52 16 4 O -0.53 -17.96 16.13 19.94 0.32 -17.64 16 5 C -0.13 -3.95 5.87 -20.11 -0.12 -4.07 16 6 C -0.08 -1.89 9.24 22.55 0.21 -1.68 16 7 C -0.07 -1.35 5.87 -19.92 -0.12 -1.47 16 8 C -0.11 -1.13 10.00 71.23 0.71 -0.42 16 9 C -0.10 -1.99 9.61 22.45 0.22 -1.77 16 10 C 0.13 3.80 6.29 38.11 0.24 4.04 16 11 N -0.67 -19.57 5.26 -303.60 -1.60 -21.17 16 12 C 0.52 21.73 6.99 87.66 0.61 22.34 16 13 O -0.56 -29.04 13.06 -3.04 -0.04 -29.07 16 14 C 0.00 -0.16 2.18 -12.29 -0.03 -0.18 16 15 H 0.08 3.05 5.72 -2.39 -0.01 3.04 16 16 C -0.13 -4.61 8.61 71.98 0.62 -3.99 16 17 C -0.51 -29.67 8.52 25.60 0.22 -29.45 16 18 H 0.02 1.65 7.34 -2.91 -0.02 1.63 16 19 C 0.01 0.37 5.47 84.65 0.46 0.84 16 20 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 21 Si 0.94 40.46 26.35 68.60 1.81 42.26 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 23 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.21 -7.31 5.97 99.48 0.59 -6.72 16 25 C -0.10 -3.33 8.26 22.67 0.19 -3.14 16 26 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.15 3.16 7.64 -2.91 -0.02 3.14 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 32 H 0.09 0.67 8.08 -2.38 -0.02 0.65 16 33 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 34 H 0.43 8.60 8.21 -92.71 -0.76 7.84 16 35 H 0.06 2.01 6.90 -2.39 -0.02 2.00 16 36 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.08 1.98 7.61 -2.39 -0.02 1.96 16 38 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 39 H 0.12 5.08 5.77 -2.91 -0.02 5.07 16 Total: -1.00 -82.07 332.56 5.42 -76.66 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.21 Total: 21.19 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 4.97 Total: 0.42 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -1.30 Total: -81.09 kcal Atomic # 8 Polarization: -59.17 SS G_CDS: -0.27 Total: -59.44 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 1.81 Total: 42.26 kcal Total: -82.07 5.42 -76.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885559040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.217 kcal (2) G-P(sol) polarization free energy of solvation -82.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds