Wall clock time and date at job start Tue Mar 31 2020 06:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34711 * 116.99751 * 2 1 4 4 O 1.21462 * 120.00136 * 359.97438 * 3 2 1 5 5 C 1.47749 * 119.99415 * 179.97438 * 3 2 1 6 6 C 1.39669 * 120.11117 * 179.97438 * 5 3 2 7 7 C 1.37965 * 119.98515 * 179.97438 * 6 5 3 8 8 C 1.50706 * 119.88342 * 180.02562 * 7 6 5 9 9 C 1.38261 * 120.23230 * 0.02663 * 7 6 5 10 10 C 1.38955 * 120.23087 * 359.97367 * 9 7 6 11 11 N 1.39964 * 119.99717 * 180.02562 * 10 9 7 12 12 C 1.34766 * 120.00367 * 144.89121 * 11 10 9 13 13 O 1.21293 * 120.00051 * 4.61930 * 12 11 10 14 14 C 1.50698 * 120.00183 * 184.62105 * 12 11 10 15 15 C 1.53006 * 109.47265 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.46991 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00223 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99697 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00163 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00231 * 359.97438 * 18 16 15 21 21 H 1.48510 * 109.47078 * 89.99801 * 20 18 16 22 22 H 1.48496 * 109.47408 * 209.99579 * 20 18 16 23 23 H 1.48497 * 109.47260 * 330.00139 * 20 18 16 24 24 C 1.38620 * 120.01008 * 0.02562 * 10 9 7 25 25 H 1.08993 * 109.47407 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47415 * 300.00743 * 1 2 3 27 27 H 1.09005 * 109.46900 * 60.00088 * 1 2 3 28 28 H 1.07994 * 120.00682 * 0.04850 * 6 5 3 29 29 H 1.08997 * 109.47442 * 269.98002 * 8 7 6 30 30 H 1.09004 * 109.46638 * 29.98271 * 8 7 6 31 31 H 1.09004 * 109.46966 * 149.97518 * 8 7 6 32 32 H 1.08002 * 119.88710 * 180.02562 * 9 7 6 33 33 H 0.96998 * 119.99436 * 324.88689 * 11 10 9 34 34 H 1.08999 * 109.47307 * 299.99411 * 14 12 11 35 35 H 1.09004 * 109.47316 * 59.99703 * 14 12 11 36 36 H 1.09008 * 109.46645 * 299.99767 * 15 14 12 37 37 H 1.08990 * 109.47424 * 59.99610 * 15 14 12 38 38 H 0.97003 * 120.00632 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.11799 * 179.74427 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5390 1.2775 0.0006 6 6 4.1756 2.5207 0.0000 7 6 5.5535 2.5898 0.0011 8 6 6.2380 3.9325 0.0011 9 6 6.3086 1.4316 0.0022 10 6 5.6850 0.1899 0.0027 11 7 6.4542 -0.9795 0.0043 12 6 6.0264 -2.0666 0.6761 13 8 4.9369 -2.0602 1.2092 14 6 6.9016 -3.2902 0.7650 15 6 6.1855 -4.3715 1.5768 16 6 7.0610 -5.5949 1.6663 17 1 8.0309 -5.6007 1.1913 18 6 6.6238 -6.7066 2.3546 19 7 7.3876 -7.7744 2.4322 20 14 4.9465 -6.6963 3.1768 21 1 3.9237 -7.1925 2.2212 22 1 4.9757 -7.5769 4.3721 23 1 4.6065 -5.3112 3.5906 24 6 4.3012 0.1090 0.0016 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.5893 3.4277 0.0000 29 1 6.4042 4.2556 -1.0265 30 1 5.6095 4.6606 0.5139 31 1 7.1954 3.8522 0.5161 32 1 7.3870 1.4922 0.0034 33 1 7.2952 -1.0073 -0.4782 34 1 7.1061 -3.6643 -0.2381 35 1 7.8403 -3.0307 1.2545 36 1 5.9813 -3.9971 2.5801 37 1 5.2467 -4.6311 1.0878 38 1 7.0798 -8.5568 2.9161 39 1 3.8147 -0.8552 -0.0021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885562943.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:11 Heat of formation + Delta-G solvation = -105.552895 kcal Electronic energy + Delta-G solvation = -22326.862492 eV Core-core repulsion = 18813.296319 eV Total energy + Delta-G solvation = -3513.566172 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.88600 -40.11139 -38.57125 -36.54318 -34.92080 -33.61179 -32.96777 -31.49737 -30.05806 -28.08629 -27.07942 -26.21388 -24.29947 -22.75033 -20.93206 -20.72521 -19.80035 -18.11839 -17.31933 -17.21364 -16.46510 -16.39447 -16.14131 -15.95723 -15.52334 -14.74060 -14.16724 -14.05312 -13.98655 -13.54786 -13.43957 -13.24820 -12.93076 -12.62220 -12.51093 -12.26127 -12.18895 -11.89188 -11.84363 -11.48131 -11.02523 -10.93545 -10.74642 -10.33980 -10.25420 -10.11189 -9.83394 -9.40813 -9.24498 -9.01847 -8.55253 -8.25479 -6.07172 -4.06681 0.50516 1.13341 2.32229 2.55017 2.88108 3.12484 3.35022 3.42082 3.52190 3.61203 4.44390 4.47064 4.55887 4.88874 4.90983 4.96265 5.00962 5.03618 5.14978 5.22319 5.28232 5.33472 5.37510 5.47069 5.53866 5.75197 5.92129 5.96248 6.02985 6.14225 6.19764 6.24822 6.31494 6.57177 6.82152 7.28184 7.35198 7.46021 7.59069 7.72749 8.33503 8.47716 8.95059 9.55452 11.05505 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.003850 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.124363 B = 7271.517029 C = 8788.292526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.347 6.347 3 C 0.513 3.487 4 O -0.511 6.511 5 C -0.108 4.108 6 C -0.077 4.077 7 C -0.081 4.081 8 C -0.111 4.111 9 C -0.115 4.115 10 C 0.147 3.853 11 N -0.684 5.684 12 C 0.509 3.491 13 O -0.516 6.516 14 C -0.120 4.120 15 C 0.001 3.999 16 C -0.527 4.527 17 H 0.073 0.927 18 C 0.070 3.930 19 N -0.902 5.902 20 Si 0.877 3.123 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.261 1.261 24 C -0.071 4.071 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.136 0.864 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.133 0.867 33 H 0.412 0.588 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.025 0.975 37 H 0.021 0.979 38 H 0.264 0.736 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.837 21.954 -7.809 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.263 6.263 3 C 0.359 3.641 4 O -0.401 6.401 5 C -0.110 4.110 6 C -0.096 4.096 7 C -0.082 4.082 8 C -0.168 4.168 9 C -0.135 4.135 10 C 0.052 3.948 11 N -0.330 5.330 12 C 0.299 3.701 13 O -0.389 6.389 14 C -0.160 4.160 15 C -0.037 4.037 16 C -0.565 4.565 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.541 5.541 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.185 1.185 24 C -0.092 4.092 25 H 0.122 0.878 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.154 0.846 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.151 0.849 33 H 0.249 0.751 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.821 21.953 -7.306 23.858 hybrid contribution -0.585 -0.170 0.234 0.652 sum -6.405 21.783 -7.072 23.781 Atomic orbital electron populations 1.23305 0.75907 1.04025 1.02433 1.86632 1.23583 1.32260 1.83834 1.21181 0.89098 0.81480 0.72348 1.90803 1.66825 1.36080 1.46387 1.18933 0.88997 0.94503 1.08579 1.21032 0.93902 0.96560 0.98150 1.19574 0.92811 0.95428 1.00400 1.20777 1.00477 0.92903 1.02617 1.21081 1.00312 0.90505 1.01621 1.17705 0.90697 0.86470 0.99945 1.43881 1.24999 1.11147 1.53003 1.21882 0.87973 0.84215 0.76032 1.90680 1.21692 1.81836 1.44706 1.21715 0.98834 0.91780 1.03654 1.19396 0.96036 0.92883 0.95409 1.21074 1.04129 0.96746 1.34518 0.90874 1.24964 0.97255 0.95266 0.95673 1.69905 1.37320 1.04191 1.42672 0.86806 0.84711 0.78749 0.79350 1.20184 1.21406 1.18526 1.21690 0.92473 0.99430 0.95589 0.87771 0.91791 0.91870 0.84614 0.90876 0.91197 0.91190 0.84931 0.75149 0.89106 0.89086 0.95699 0.96098 0.92651 0.82555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.44 16 2 O -0.35 -4.86 9.81 -40.52 -0.40 -5.26 16 3 C 0.51 7.43 7.90 34.62 0.27 7.71 16 4 O -0.51 -7.92 16.13 -19.24 -0.31 -8.23 16 5 C -0.11 -1.48 5.87 -105.00 -0.62 -2.10 16 6 C -0.08 -0.89 9.24 -39.15 -0.36 -1.25 16 7 C -0.08 -0.79 5.87 -104.71 -0.61 -1.41 16 8 C -0.11 -0.72 10.01 36.01 0.36 -0.36 16 9 C -0.11 -1.16 9.61 -39.31 -0.38 -1.53 16 10 C 0.15 1.89 6.29 -83.74 -0.53 1.36 16 11 N -0.68 -8.58 5.34 -9.90 -0.05 -8.64 16 12 C 0.51 8.60 7.67 -10.99 -0.08 8.52 16 13 O -0.52 -10.66 13.42 5.55 0.07 -10.59 16 14 C -0.12 -2.15 5.64 -27.88 -0.16 -2.31 16 15 C 0.00 0.02 3.33 -27.88 -0.09 -0.08 16 16 C -0.53 -14.65 9.66 -34.44 -0.33 -14.98 16 17 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 19 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 20 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 24 C -0.07 -1.05 8.26 -38.97 -0.32 -1.37 16 25 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.14 1.42 7.64 -52.49 -0.40 1.02 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.41 3.63 8.82 -40.82 -0.36 3.27 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.02 0.62 7.16 -51.92 -0.37 0.25 16 37 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.16 2.63 5.78 -52.49 -0.30 2.33 16 LS Contribution 338.56 15.07 5.10 5.10 Total: -1.00 -34.88 338.56 -6.57 -41.46 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.21 Total: -0.18 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -1.88 Total: -4.42 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.72 Total: -35.40 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.63 Total: -24.07 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.88 -6.57 -41.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885562943.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.094 kcal (2) G-P(sol) polarization free energy of solvation -34.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds