Wall clock time and date at job start Tue Mar 31 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34711 * 116.99751 * 2 1 4 4 O 1.21462 * 120.00136 * 359.97438 * 3 2 1 5 5 C 1.47749 * 119.99415 * 179.97438 * 3 2 1 6 6 C 1.39669 * 120.11117 * 179.97438 * 5 3 2 7 7 C 1.37965 * 119.98515 * 179.97438 * 6 5 3 8 8 C 1.50706 * 119.88342 * 180.02562 * 7 6 5 9 9 C 1.38261 * 120.23230 * 0.02663 * 7 6 5 10 10 C 1.38955 * 120.23087 * 359.97367 * 9 7 6 11 11 N 1.39964 * 119.99717 * 180.02562 * 10 9 7 12 12 C 1.34766 * 120.00367 * 144.89121 * 11 10 9 13 13 O 1.21293 * 120.00051 * 4.61930 * 12 11 10 14 14 C 1.50698 * 120.00183 * 184.62105 * 12 11 10 15 15 C 1.53006 * 109.47265 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.46991 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00223 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99697 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00163 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00231 * 359.97438 * 18 16 15 21 21 H 1.48510 * 109.47078 * 89.99801 * 20 18 16 22 22 H 1.48496 * 109.47408 * 209.99579 * 20 18 16 23 23 H 1.48497 * 109.47260 * 330.00139 * 20 18 16 24 24 C 1.38620 * 120.01008 * 0.02562 * 10 9 7 25 25 H 1.08993 * 109.47407 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47415 * 300.00743 * 1 2 3 27 27 H 1.09005 * 109.46900 * 60.00088 * 1 2 3 28 28 H 1.07994 * 120.00682 * 0.04850 * 6 5 3 29 29 H 1.08997 * 109.47442 * 269.98002 * 8 7 6 30 30 H 1.09004 * 109.46638 * 29.98271 * 8 7 6 31 31 H 1.09004 * 109.46966 * 149.97518 * 8 7 6 32 32 H 1.08002 * 119.88710 * 180.02562 * 9 7 6 33 33 H 0.96998 * 119.99436 * 324.88689 * 11 10 9 34 34 H 1.08999 * 109.47307 * 299.99411 * 14 12 11 35 35 H 1.09004 * 109.47316 * 59.99703 * 14 12 11 36 36 H 1.09008 * 109.46645 * 299.99767 * 15 14 12 37 37 H 1.08990 * 109.47424 * 59.99610 * 15 14 12 38 38 H 0.97003 * 120.00632 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.11799 * 179.74427 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5390 1.2775 0.0006 6 6 4.1756 2.5207 0.0000 7 6 5.5535 2.5898 0.0011 8 6 6.2380 3.9325 0.0011 9 6 6.3086 1.4316 0.0022 10 6 5.6850 0.1899 0.0027 11 7 6.4542 -0.9795 0.0043 12 6 6.0264 -2.0666 0.6761 13 8 4.9369 -2.0602 1.2092 14 6 6.9016 -3.2902 0.7650 15 6 6.1855 -4.3715 1.5768 16 6 7.0610 -5.5949 1.6663 17 1 8.0309 -5.6007 1.1913 18 6 6.6238 -6.7066 2.3546 19 7 7.3876 -7.7744 2.4322 20 14 4.9465 -6.6963 3.1768 21 1 3.9237 -7.1925 2.2212 22 1 4.9757 -7.5769 4.3721 23 1 4.6065 -5.3112 3.5906 24 6 4.3012 0.1090 0.0016 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.5893 3.4277 0.0000 29 1 6.4042 4.2556 -1.0265 30 1 5.6095 4.6606 0.5139 31 1 7.1954 3.8522 0.5161 32 1 7.3870 1.4922 0.0034 33 1 7.2952 -1.0073 -0.4782 34 1 7.1061 -3.6643 -0.2381 35 1 7.8403 -3.0307 1.2545 36 1 5.9813 -3.9971 2.5801 37 1 5.2467 -4.6311 1.0878 38 1 7.0798 -8.5568 2.9161 39 1 3.8147 -0.8552 -0.0021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885562943.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:10 Heat of formation + Delta-G solvation = -128.088327 kcal Electronic energy + Delta-G solvation = -22327.839701 eV Core-core repulsion = 18813.296319 eV Total energy + Delta-G solvation = -3514.543382 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.93863 -41.26476 -39.64567 -37.61924 -36.07099 -35.53898 -33.88308 -33.33158 -31.18098 -28.92777 -28.09241 -27.70740 -25.25031 -24.17800 -22.27102 -21.86669 -21.08162 -19.39378 -18.86785 -18.37850 -17.66996 -17.48743 -17.31883 -16.98992 -16.70697 -16.24809 -15.84848 -15.17303 -14.87352 -14.78928 -14.62647 -14.44690 -14.26481 -14.08149 -13.42614 -13.25079 -13.16528 -12.96574 -12.91173 -12.75134 -12.65977 -12.11740 -11.96512 -11.91635 -11.81828 -11.76618 -11.42328 -11.37346 -10.78316 -10.77152 -9.89784 -9.25778 -8.30887 -6.33491 -0.45519 0.18662 1.28384 1.33354 1.36015 1.50120 1.60559 1.63750 2.02725 2.35102 2.66819 3.05300 3.49500 3.76853 3.87722 4.06379 4.13728 4.18399 4.23173 4.24589 4.28202 4.39708 4.49579 4.58767 4.67350 4.80495 4.91740 4.98420 5.08706 5.13515 5.18411 5.23607 5.34408 5.40364 5.44895 5.47678 5.61658 5.86250 6.23493 6.42568 6.53454 6.73477 7.15655 7.32067 8.84655 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.003850 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.124363 B = 7271.517029 C = 8788.292526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.510 3.490 4 O -0.529 6.529 5 C -0.126 4.126 6 C -0.077 4.077 7 C -0.073 4.073 8 C -0.110 4.110 9 C -0.097 4.097 10 C 0.129 3.871 11 N -0.661 5.661 12 C 0.514 3.486 13 O -0.560 6.560 14 C -0.112 4.112 15 C 0.003 3.997 16 C -0.527 4.527 17 H 0.053 0.947 18 C 0.015 3.985 19 N -0.943 5.943 20 Si 0.935 3.065 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.262 1.262 24 C -0.092 4.092 25 H 0.126 0.874 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.144 0.856 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.170 0.830 33 H 0.433 0.567 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.267 0.733 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.018 24.354 -8.303 26.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.281 6.281 3 C 0.357 3.643 4 O -0.421 6.421 5 C -0.128 4.128 6 C -0.096 4.096 7 C -0.074 4.074 8 C -0.166 4.166 9 C -0.117 4.117 10 C 0.035 3.965 11 N -0.308 5.308 12 C 0.304 3.696 13 O -0.437 6.437 14 C -0.152 4.152 15 C -0.035 4.035 16 C -0.565 4.565 17 H 0.072 0.928 18 C -0.183 4.183 19 N -0.584 5.584 20 Si 0.760 3.240 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.186 1.186 24 C -0.113 4.113 25 H 0.144 0.856 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.162 0.838 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.187 0.813 33 H 0.273 0.727 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.029 0.971 37 H 0.028 0.972 38 H 0.076 0.924 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.971 24.380 -7.837 26.087 hybrid contribution -0.795 -0.837 0.330 1.201 sum -5.766 23.543 -7.507 25.374 Atomic orbital electron populations 1.23600 0.74103 1.05707 1.03025 1.86627 1.25595 1.32304 1.83607 1.21438 0.89644 0.81355 0.71859 1.90772 1.67292 1.36434 1.47578 1.19033 0.88574 0.95216 1.09996 1.21280 0.95040 0.95882 0.97367 1.20002 0.92060 0.97062 0.98258 1.20878 1.00954 0.90756 1.04036 1.21438 1.02117 0.89052 0.99093 1.17841 0.90091 0.87332 1.01276 1.43470 1.25454 1.10038 1.51867 1.21531 0.87041 0.84885 0.76125 1.90683 1.23389 1.82692 1.46956 1.21516 0.98924 0.90850 1.03914 1.19251 0.95438 0.93206 0.95643 1.21422 1.03780 0.98056 1.33234 0.92835 1.25769 1.00677 0.95188 0.96683 1.70016 1.39203 1.05029 1.44158 0.85877 0.80731 0.78661 0.78727 1.19423 1.20558 1.18599 1.21496 0.93643 0.98526 0.97627 0.85627 0.91537 0.90959 0.83783 0.89201 0.90558 0.89484 0.81268 0.72742 0.87131 0.87118 0.97146 0.97178 0.92418 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.77 16 2 O -0.37 -10.60 9.81 -56.21 -0.55 -11.15 16 3 C 0.51 15.14 7.90 70.34 0.56 15.70 16 4 O -0.53 -16.57 16.13 19.96 0.32 -16.25 16 5 C -0.13 -3.46 5.87 -20.11 -0.12 -3.58 16 6 C -0.08 -1.64 9.24 22.55 0.21 -1.43 16 7 C -0.07 -1.18 5.87 -19.92 -0.12 -1.29 16 8 C -0.11 -0.94 10.01 71.24 0.71 -0.23 16 9 C -0.10 -1.61 9.61 22.45 0.22 -1.39 16 10 C 0.13 3.09 6.29 38.11 0.24 3.33 16 11 N -0.66 -15.19 5.34 -303.61 -1.62 -16.81 16 12 C 0.51 16.90 7.67 87.66 0.67 17.57 16 13 O -0.56 -23.44 13.42 -3.07 -0.04 -23.48 16 14 C -0.11 -3.88 5.64 29.85 0.17 -3.71 16 15 C 0.00 0.12 3.33 29.85 0.10 0.22 16 16 C -0.53 -29.50 9.66 25.60 0.25 -29.25 16 17 H 0.05 3.13 7.99 -2.91 -0.02 3.11 16 18 C 0.01 0.85 5.47 84.65 0.46 1.32 16 19 N -0.94 -58.30 13.96 21.44 0.30 -58.00 16 20 Si 0.94 46.18 27.47 68.60 1.88 48.06 16 21 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.26 -12.85 6.54 99.48 0.65 -12.20 16 24 C -0.09 -2.72 8.26 22.67 0.19 -2.54 16 25 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.14 2.79 7.64 -2.91 -0.02 2.76 16 29 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.61 8.08 -2.38 -0.02 0.59 16 31 H 0.09 0.51 8.08 -2.38 -0.02 0.49 16 32 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 33 H 0.43 6.18 8.82 -92.71 -0.82 5.37 16 34 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 35 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 36 H 0.01 0.51 7.16 -2.38 -0.02 0.50 16 37 H 0.01 0.49 7.53 -2.39 -0.02 0.47 16 38 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 39 H 0.13 4.51 5.78 -2.91 -0.02 4.49 16 Total: -1.00 -77.68 338.56 5.23 -72.46 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.20 Total: 8.69 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 4.73 Total: -3.51 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -1.32 Total: -74.81 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -0.27 Total: -50.88 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.88 Total: 48.06 kcal Total: -77.68 5.23 -72.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885562943.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.630 kcal (2) G-P(sol) polarization free energy of solvation -77.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds