Wall clock time and date at job start Tue Mar 31 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.71693 * 2 1 4 4 C 1.53418 * 109.68326 * 239.45559 * 2 1 3 5 5 C 1.53066 * 108.28518 * 304.94143 * 4 2 1 6 6 H 1.08999 * 109.43644 * 71.82671 * 5 4 2 7 7 O 1.42901 * 109.43556 * 191.74175 * 5 4 2 8 8 C 1.50784 * 109.68642 * 311.76257 * 5 4 2 9 9 C 1.38650 * 118.72695 * 197.75499 * 8 5 4 10 10 C 1.38206 * 120.49688 * 179.97438 * 9 8 5 11 11 C 1.38140 * 120.07478 * 0.50869 * 10 9 8 12 12 C 1.38743 * 119.85598 * 359.37803 * 11 10 9 13 13 N 1.39576 * 119.97178 * 180.33567 * 12 11 10 14 14 C 1.34773 * 120.00020 * 325.22757 * 13 12 11 15 15 O 1.21767 * 119.99985 * 4.51546 * 14 13 12 16 16 C 1.41814 * 120.00086 * 184.51836 * 14 13 12 17 17 H 1.07999 * 119.99778 * 359.97438 * 16 14 13 18 18 C 1.40140 * 119.99960 * 180.02562 * 16 14 13 19 19 N 1.30620 * 120.00011 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99632 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47350 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47135 * 120.00378 * 20 18 16 23 23 H 1.48508 * 109.46592 * 240.00028 * 20 18 16 24 24 C 1.38163 * 121.39758 * 17.86058 * 8 5 4 25 25 O 1.35857 * 121.85484 * 359.54228 * 24 8 5 26 26 H 1.09004 * 109.46854 * 299.45130 * 1 2 3 27 27 H 1.08997 * 109.47289 * 59.44786 * 1 2 3 28 28 H 1.09000 * 109.47089 * 179.45027 * 1 2 3 29 29 H 1.08999 * 109.47340 * 180.54821 * 3 2 1 30 30 H 1.09001 * 109.47277 * 300.55088 * 3 2 1 31 31 H 1.09000 * 109.46750 * 60.54424 * 3 2 1 32 32 H 1.09002 * 109.70008 * 64.63800 * 4 2 1 33 33 H 1.08999 * 109.69989 * 185.20087 * 4 2 1 34 34 H 0.96705 * 113.99806 * 179.97438 * 7 5 4 35 35 H 1.07995 * 119.74816 * 0.25799 * 9 8 5 36 36 H 1.08002 * 119.96099 * 180.23039 * 10 9 8 37 37 H 1.07997 * 120.07005 * 179.65560 * 11 10 9 38 38 H 0.97004 * 119.99827 * 145.23569 * 13 12 11 39 39 H 0.97002 * 120.00224 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0462 1.4403 0.0000 4 6 2.0467 -0.7341 -1.2441 5 6 1.4247 -2.1325 -1.2695 6 1 0.3668 -2.0544 -1.5200 7 8 2.0884 -2.9303 -2.2519 8 6 1.5733 -2.7792 0.0845 9 6 1.4242 -4.1539 0.1863 10 6 1.5533 -4.7846 1.4093 11 6 1.8224 -4.0452 2.5446 12 6 1.9758 -2.6693 2.4525 13 7 2.2547 -1.9206 3.5970 14 6 1.7254 -2.2803 4.7831 15 8 1.0716 -3.3036 4.8729 16 6 1.9299 -1.4670 5.9267 17 1 2.5101 -0.5596 5.8472 18 6 1.3800 -1.8413 7.1602 19 7 0.6795 -2.9395 7.2566 20 14 1.6500 -0.7702 8.6667 21 1 2.4733 0.4085 8.2950 22 1 0.3379 -0.3129 9.1905 23 1 2.3541 -1.5553 9.7123 24 6 1.8503 -2.0315 1.2128 25 8 2.0112 -0.6836 1.1581 26 1 -0.3633 0.5053 0.8949 27 1 -0.3634 0.5224 -0.8850 28 1 -0.3633 -1.0276 -0.0099 29 1 3.1361 1.4357 -0.0098 30 1 1.6770 1.9586 -0.8850 31 1 1.6930 1.9527 0.8948 32 1 1.7566 -0.1866 -2.1408 33 1 3.1328 -0.8151 -1.1983 34 1 1.7458 -3.8318 -2.3233 35 1 1.2101 -4.7366 -0.6973 36 1 1.4391 -5.8564 1.4781 37 1 1.9178 -4.5375 3.5011 38 1 2.8295 -1.1414 3.5387 39 1 0.2985 -3.1984 8.1103 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885656446.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:38 Heat of formation + Delta-G solvation = -101.705722 kcal Electronic energy + Delta-G solvation = -23891.834475 eV Core-core repulsion = 20378.435129 eV Total energy + Delta-G solvation = -3513.399346 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.86435 -38.37827 -37.25842 -36.37402 -33.92912 -33.24504 -32.29440 -31.00684 -28.81703 -28.03998 -27.41508 -26.32136 -23.66050 -22.37526 -21.96945 -19.88339 -18.92138 -17.96561 -17.54791 -16.49567 -16.33262 -15.79455 -15.26023 -15.02970 -14.74317 -14.27163 -14.10868 -13.90594 -13.61604 -13.08396 -12.83096 -12.65704 -12.49935 -12.21937 -12.07954 -11.94612 -11.79941 -11.54059 -11.35174 -11.26935 -11.13461 -10.88176 -10.60537 -10.46602 -10.43562 -10.28720 -9.95464 -9.25331 -8.83580 -7.95474 -7.61766 -6.86419 -6.34843 -4.86434 1.85205 1.95945 3.05260 3.14102 3.18947 3.44519 3.98937 4.01488 4.28822 4.49251 4.61622 4.63297 4.78047 4.89895 5.03400 5.14952 5.18730 5.40627 5.50670 5.55926 5.61928 5.70179 5.71628 5.74608 5.78435 5.93623 6.00931 6.13144 6.24400 6.29799 6.43701 6.71900 6.87329 7.09431 7.26085 7.39130 7.54920 7.75450 7.92536 8.09137 8.30477 8.83463 9.35241 10.41199 10.62359 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.021177 B = 0.004865 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.876827 B = 5754.586179 C = 6764.279936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.119 3.881 3 C -0.137 4.137 4 C -0.138 4.138 5 C 0.157 3.843 6 H 0.064 0.936 7 O -0.560 6.560 8 C -0.185 4.185 9 C -0.131 4.131 10 C -0.128 4.128 11 C -0.102 4.102 12 C 0.173 3.827 13 N -0.693 5.693 14 C 0.546 3.454 15 O -0.570 6.570 16 C -0.537 4.537 17 H 0.070 0.930 18 C 0.089 3.911 19 N -0.749 5.749 20 Si 0.911 3.089 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.274 1.274 24 C 0.090 3.910 25 O -0.306 6.306 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.377 0.623 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.151 0.849 38 H 0.395 0.605 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.984 4.431 -14.964 15.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.081 3.919 3 C -0.194 4.194 4 C -0.175 4.175 5 C 0.098 3.902 6 H 0.082 0.918 7 O -0.367 6.367 8 C -0.186 4.186 9 C -0.151 4.151 10 C -0.147 4.147 11 C -0.123 4.123 12 C 0.073 3.927 13 N -0.336 5.336 14 C 0.355 3.645 15 O -0.454 6.454 16 C -0.572 4.572 17 H 0.089 0.911 18 C -0.134 4.134 19 N -0.377 5.377 20 Si 0.736 3.264 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.199 1.199 24 C 0.043 3.957 25 O -0.221 6.221 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.225 0.775 35 H 0.128 0.872 36 H 0.136 0.864 37 H 0.168 0.832 38 H 0.228 0.772 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.823 4.311 -14.607 15.252 hybrid contribution -0.125 0.251 0.610 0.671 sum 0.698 4.561 -13.997 14.738 Atomic orbital electron populations 1.22446 0.94733 1.03332 1.02993 1.21731 0.93803 0.92612 0.83735 1.21750 1.02146 0.92449 1.03013 1.22176 1.02471 0.94302 0.98586 1.20449 0.95299 0.90039 0.84391 0.91809 1.86490 1.63764 1.27784 1.58626 1.20042 1.09300 0.94926 0.94375 1.20430 1.04410 0.92757 0.97480 1.20858 1.02176 0.99471 0.92178 1.21413 0.99538 0.91590 0.99803 1.17537 0.99412 0.90910 0.84818 1.43961 1.52056 1.30988 1.06632 1.17061 0.79735 0.86603 0.81093 1.90615 1.43846 1.27191 1.83738 1.20085 1.34783 1.09383 0.92950 0.91147 1.25753 0.92994 0.94652 1.00004 1.70018 1.22734 1.19496 1.25428 0.86249 0.78838 0.80531 0.80823 1.18541 1.19967 1.19935 1.18440 1.02406 0.82083 0.92814 1.85980 1.77314 1.16830 1.41961 0.91133 0.91272 0.91632 0.91478 0.90678 0.91039 0.89856 0.89781 0.77455 0.87191 0.86387 0.83153 0.77170 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 8.17 37.16 0.30 -1.93 16 2 C 0.12 1.59 1.13 -90.40 -0.10 1.49 16 3 C -0.14 -1.44 8.88 37.16 0.33 -1.11 16 4 C -0.14 -1.72 4.75 -26.48 -0.13 -1.85 16 5 C 0.16 2.10 2.98 -27.81 -0.08 2.01 16 6 H 0.06 0.77 6.97 -51.93 -0.36 0.41 16 7 O -0.56 -7.08 13.18 -35.23 -0.46 -7.55 16 8 C -0.18 -3.05 5.01 -104.46 -0.52 -3.57 16 9 C -0.13 -2.06 9.26 -39.44 -0.37 -2.42 16 10 C -0.13 -2.27 10.04 -39.63 -0.40 -2.67 16 11 C -0.10 -2.23 8.69 -39.43 -0.34 -2.57 16 12 C 0.17 3.83 6.33 -83.49 -0.53 3.30 16 13 N -0.69 -16.51 5.13 -12.25 -0.06 -16.57 16 14 C 0.55 15.42 7.41 -14.89 -0.11 15.31 16 15 O -0.57 -17.81 12.28 5.13 0.06 -17.75 16 16 C -0.54 -14.86 9.31 -37.50 -0.35 -15.21 16 17 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 18 C 0.09 2.40 5.50 -17.35 -0.10 2.30 16 19 N -0.75 -21.69 11.73 55.55 0.65 -21.04 16 20 Si 0.91 19.53 29.56 -169.99 -5.02 14.50 16 21 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 C 0.09 1.72 6.05 -38.96 -0.24 1.49 16 25 O -0.31 -5.38 9.13 -19.29 -0.18 -5.56 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.91 5.85 -51.93 -0.30 0.61 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.38 3.43 7.46 45.56 0.34 3.77 16 35 H 0.11 1.30 6.73 -52.49 -0.35 0.95 16 36 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.15 3.70 6.18 -52.49 -0.32 3.38 16 38 H 0.39 8.54 8.44 -40.82 -0.34 8.19 16 39 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 LS Contribution 318.66 15.07 4.80 4.80 Total: -1.00 -33.71 318.66 -7.11 -40.82 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -4.28 Total: 13.75 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -2.62 Total: -5.42 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.59 Total: -37.61 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -0.58 Total: -30.85 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.71 -7.11 -40.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885656446.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.882 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds