Wall clock time and date at job start Tue Mar 31 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.71693 * 2 1 4 4 C 1.53418 * 109.68326 * 239.45559 * 2 1 3 5 5 C 1.53066 * 108.28518 * 304.94143 * 4 2 1 6 6 H 1.08999 * 109.43644 * 71.82671 * 5 4 2 7 7 O 1.42901 * 109.43556 * 191.74175 * 5 4 2 8 8 C 1.50784 * 109.68642 * 311.76257 * 5 4 2 9 9 C 1.38650 * 118.72695 * 197.75499 * 8 5 4 10 10 C 1.38206 * 120.49688 * 179.97438 * 9 8 5 11 11 C 1.38140 * 120.07478 * 0.50869 * 10 9 8 12 12 C 1.38743 * 119.85598 * 359.37803 * 11 10 9 13 13 N 1.39576 * 119.97178 * 180.33567 * 12 11 10 14 14 C 1.34773 * 120.00020 * 325.22757 * 13 12 11 15 15 O 1.21767 * 119.99985 * 4.51546 * 14 13 12 16 16 C 1.41814 * 120.00086 * 184.51836 * 14 13 12 17 17 H 1.07999 * 119.99778 * 359.97438 * 16 14 13 18 18 C 1.40140 * 119.99960 * 180.02562 * 16 14 13 19 19 N 1.30620 * 120.00011 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99632 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47350 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47135 * 120.00378 * 20 18 16 23 23 H 1.48508 * 109.46592 * 240.00028 * 20 18 16 24 24 C 1.38163 * 121.39758 * 17.86058 * 8 5 4 25 25 O 1.35857 * 121.85484 * 359.54228 * 24 8 5 26 26 H 1.09004 * 109.46854 * 299.45130 * 1 2 3 27 27 H 1.08997 * 109.47289 * 59.44786 * 1 2 3 28 28 H 1.09000 * 109.47089 * 179.45027 * 1 2 3 29 29 H 1.08999 * 109.47340 * 180.54821 * 3 2 1 30 30 H 1.09001 * 109.47277 * 300.55088 * 3 2 1 31 31 H 1.09000 * 109.46750 * 60.54424 * 3 2 1 32 32 H 1.09002 * 109.70008 * 64.63800 * 4 2 1 33 33 H 1.08999 * 109.69989 * 185.20087 * 4 2 1 34 34 H 0.96705 * 113.99806 * 179.97438 * 7 5 4 35 35 H 1.07995 * 119.74816 * 0.25799 * 9 8 5 36 36 H 1.08002 * 119.96099 * 180.23039 * 10 9 8 37 37 H 1.07997 * 120.07005 * 179.65560 * 11 10 9 38 38 H 0.97004 * 119.99827 * 145.23569 * 13 12 11 39 39 H 0.97002 * 120.00224 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0462 1.4403 0.0000 4 6 2.0467 -0.7341 -1.2441 5 6 1.4247 -2.1325 -1.2695 6 1 0.3668 -2.0544 -1.5200 7 8 2.0884 -2.9303 -2.2519 8 6 1.5733 -2.7792 0.0845 9 6 1.4242 -4.1539 0.1863 10 6 1.5533 -4.7846 1.4093 11 6 1.8224 -4.0452 2.5446 12 6 1.9758 -2.6693 2.4525 13 7 2.2547 -1.9206 3.5970 14 6 1.7254 -2.2803 4.7831 15 8 1.0716 -3.3036 4.8729 16 6 1.9299 -1.4670 5.9267 17 1 2.5101 -0.5596 5.8472 18 6 1.3800 -1.8413 7.1602 19 7 0.6795 -2.9395 7.2566 20 14 1.6500 -0.7702 8.6667 21 1 2.4733 0.4085 8.2950 22 1 0.3379 -0.3129 9.1905 23 1 2.3541 -1.5553 9.7123 24 6 1.8503 -2.0315 1.2128 25 8 2.0112 -0.6836 1.1581 26 1 -0.3633 0.5053 0.8949 27 1 -0.3634 0.5224 -0.8850 28 1 -0.3633 -1.0276 -0.0099 29 1 3.1361 1.4357 -0.0098 30 1 1.6770 1.9586 -0.8850 31 1 1.6930 1.9527 0.8948 32 1 1.7566 -0.1866 -2.1408 33 1 3.1328 -0.8151 -1.1983 34 1 1.7458 -3.8318 -2.3233 35 1 1.2101 -4.7366 -0.6973 36 1 1.4391 -5.8564 1.4781 37 1 1.9178 -4.5375 3.5011 38 1 2.8295 -1.1414 3.5387 39 1 0.2985 -3.1984 8.1103 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885656446.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:38 Heat of formation + Delta-G solvation = -127.436456 kcal Electronic energy + Delta-G solvation = -23892.950244 eV Core-core repulsion = 20378.435129 eV Total energy + Delta-G solvation = -3514.515115 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.14591 -40.12180 -38.53467 -37.82174 -35.33363 -34.88937 -34.29756 -32.23517 -30.48680 -29.21413 -28.39945 -28.23781 -24.90747 -23.65706 -23.52950 -21.61280 -20.25378 -19.48056 -19.07922 -17.82193 -17.68028 -17.55805 -16.79944 -16.33376 -16.04750 -15.83372 -15.46949 -15.34911 -14.80796 -14.62918 -14.47437 -14.12489 -13.81307 -13.32913 -13.23799 -13.12988 -13.03425 -12.90505 -12.84057 -12.72624 -12.63685 -12.56168 -12.12719 -11.99997 -11.56833 -11.53362 -11.19576 -11.00492 -10.70993 -9.84986 -9.31483 -8.55512 -8.39323 -7.02755 0.39214 0.48964 1.36748 1.37515 1.56091 2.19013 2.23146 2.35177 2.79361 2.96771 3.21071 3.58874 3.62964 3.65956 3.83103 3.94886 4.10211 4.16746 4.29539 4.32599 4.48581 4.61278 4.67135 4.74501 4.81249 4.84248 4.89697 4.97989 5.06569 5.18507 5.20521 5.28594 5.35547 5.40005 5.60792 5.85612 5.89379 6.13649 6.24680 6.67632 6.72324 6.77182 7.38253 8.37296 8.55503 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.021177 B = 0.004865 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.876827 B = 5754.586179 C = 6764.279936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.106 3.894 3 C -0.134 4.134 4 C -0.134 4.134 5 C 0.161 3.839 6 H 0.087 0.913 7 O -0.564 6.564 8 C -0.185 4.185 9 C -0.112 4.112 10 C -0.133 4.133 11 C -0.129 4.129 12 C 0.124 3.876 13 N -0.690 5.690 14 C 0.532 3.468 15 O -0.613 6.613 16 C -0.566 4.566 17 H 0.085 0.915 18 C 0.033 3.967 19 N -0.801 5.801 20 Si 1.002 2.998 21 H -0.248 1.248 22 H -0.265 1.265 23 H -0.264 1.264 24 C 0.093 3.907 25 O -0.327 6.327 26 H 0.053 0.947 27 H 0.106 0.894 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.394 0.606 35 H 0.162 0.838 36 H 0.142 0.858 37 H 0.107 0.893 38 H 0.401 0.599 39 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.831 5.991 -17.620 18.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.069 3.931 3 C -0.190 4.190 4 C -0.171 4.171 5 C 0.102 3.898 6 H 0.105 0.895 7 O -0.373 6.373 8 C -0.187 4.187 9 C -0.130 4.130 10 C -0.152 4.152 11 C -0.151 4.151 12 C 0.027 3.973 13 N -0.334 5.334 14 C 0.341 3.659 15 O -0.501 6.501 16 C -0.601 4.601 17 H 0.103 0.897 18 C -0.185 4.185 19 N -0.430 5.430 20 Si 0.820 3.180 21 H -0.171 1.171 22 H -0.190 1.190 23 H -0.189 1.189 24 C 0.045 3.955 25 O -0.243 6.243 26 H 0.072 0.928 27 H 0.125 0.875 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.128 0.872 31 H 0.080 0.920 32 H 0.135 0.865 33 H 0.089 0.911 34 H 0.245 0.755 35 H 0.179 0.821 36 H 0.160 0.840 37 H 0.125 0.875 38 H 0.235 0.765 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.688 5.869 -17.335 18.314 hybrid contribution -0.076 -0.273 1.224 1.256 sum 0.611 5.596 -16.111 17.066 Atomic orbital electron populations 1.22450 0.94116 1.02647 1.04014 1.22202 0.94428 0.93626 0.82819 1.21810 1.02166 0.90798 1.04261 1.22183 1.01564 0.94179 0.99224 1.20511 0.96709 0.90214 0.82332 0.89538 1.86488 1.64044 1.29059 1.57722 1.20616 1.07318 0.95387 0.95402 1.20986 1.01032 0.92886 0.98142 1.21114 1.01745 1.00575 0.91739 1.21220 1.02008 0.92173 0.99652 1.17836 1.02628 0.91275 0.85566 1.43505 1.52105 1.31312 1.06456 1.17415 0.79598 0.86266 0.82623 1.90570 1.45806 1.28783 1.84939 1.20587 1.35663 1.10062 0.93804 0.89656 1.27016 0.91808 0.96009 1.03653 1.70162 1.23963 1.21862 1.26978 0.84915 0.79233 0.78389 0.75426 1.17097 1.18958 1.18897 1.18462 1.01545 0.83172 0.92283 1.85963 1.77566 1.16149 1.44627 0.92833 0.87490 0.93155 0.91563 0.87177 0.91957 0.86471 0.91082 0.75531 0.82067 0.83983 0.87460 0.76512 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.00 8.17 71.98 0.59 -3.41 16 2 C 0.11 2.61 1.13 -10.65 -0.01 2.60 16 3 C -0.13 -2.50 8.88 71.98 0.64 -1.86 16 4 C -0.13 -2.88 4.75 30.76 0.15 -2.73 16 5 C 0.16 3.68 2.98 29.90 0.09 3.77 16 6 H 0.09 1.67 6.97 -2.39 -0.02 1.65 16 7 O -0.56 -11.64 13.18 -148.98 -1.96 -13.61 16 8 C -0.19 -5.76 5.01 -19.76 -0.10 -5.86 16 9 C -0.11 -3.21 9.26 22.36 0.21 -3.01 16 10 C -0.13 -4.72 10.04 22.24 0.22 -4.50 16 11 C -0.13 -6.03 8.69 22.37 0.19 -5.84 16 12 C 0.12 5.85 6.33 38.45 0.24 6.10 16 13 N -0.69 -35.27 5.13 -310.85 -1.59 -36.86 16 14 C 0.53 32.18 7.41 85.13 0.63 32.81 16 15 O -0.61 -41.41 12.28 -4.56 -0.06 -41.47 16 16 C -0.57 -32.80 9.31 23.62 0.22 -32.58 16 17 H 0.09 4.49 7.85 -2.91 -0.02 4.46 16 18 C 0.03 1.84 5.50 85.33 0.47 2.31 16 19 N -0.80 -48.60 11.73 21.85 0.26 -48.34 16 20 Si 1.00 40.67 29.56 68.60 2.03 42.70 16 21 H -0.25 -9.40 7.11 99.48 0.71 -8.70 16 22 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 23 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 24 C 0.09 3.60 6.05 22.68 0.14 3.73 16 25 O -0.33 -11.57 9.13 -91.95 -0.84 -12.41 16 26 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.11 1.59 8.14 -2.39 -0.02 1.58 16 28 H 0.05 1.29 5.85 -2.39 -0.01 1.28 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.39 5.05 7.46 -74.05 -0.55 4.50 16 35 H 0.16 2.97 6.73 -2.91 -0.02 2.95 16 36 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 37 H 0.11 5.88 6.18 -2.91 -0.02 5.86 16 38 H 0.40 18.58 8.44 -92.71 -0.78 17.79 16 39 H 0.28 15.15 8.29 -92.71 -0.77 14.38 16 Total: -1.00 -80.31 318.66 1.28 -79.03 By element: Atomic # 1 Polarization: 39.66 SS G_CDS: -0.23 Total: 39.42 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 3.68 Total: -8.46 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -1.34 Total: -85.21 kcal Atomic # 8 Polarization: -64.63 SS G_CDS: -2.86 Total: -67.49 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -80.31 1.28 -79.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885656446.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.403 kcal (2) G-P(sol) polarization free energy of solvation -80.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds