Wall clock time and date at job start Tue Mar 31 2020 06:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41385 * 126.80116 * 2 1 4 4 C 1.35454 * 103.98102 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.77109 * 179.97438 * 4 3 2 6 6 C 1.50701 * 115.55464 * 317.39829 * 5 4 3 7 7 O 1.20822 * 120.00464 * 206.22296 * 6 5 4 8 8 O 1.34235 * 119.99770 * 26.22050 * 6 5 4 9 9 C 1.45188 * 116.99944 * 173.36223 * 8 6 5 10 10 C 1.53002 * 109.47148 * 184.23299 * 9 8 6 11 11 C 1.50704 * 115.54751 * 81.22060 * 10 9 8 12 12 H 1.07998 * 119.99989 * 219.30534 * 11 10 9 13 13 C 1.37870 * 120.00164 * 39.31393 * 11 10 9 14 14 N 1.31511 * 120.00208 * 26.64806 * 13 11 10 15 15 Si 1.86798 * 120.00006 * 206.65537 * 13 11 10 16 16 H 1.48503 * 109.47521 * 64.99296 * 15 13 11 17 17 H 1.48503 * 109.47423 * 184.99712 * 15 13 11 18 18 H 1.48508 * 109.47092 * 304.99391 * 15 13 11 19 19 C 1.52999 * 117.49966 * 295.55106 * 10 9 8 20 20 C 1.52999 * 60.03152 * 252.49639 * 19 10 9 21 21 C 1.53001 * 117.51697 * 103.10201 * 5 4 3 22 22 C 1.52995 * 60.00219 * 107.48026 * 21 5 4 23 23 O 1.34036 * 106.44897 * 0.23815 * 4 3 2 24 24 N 1.20921 * 111.56857 * 359.56307 * 23 4 3 25 25 H 1.09002 * 109.47076 * 94.86505 * 1 2 3 26 26 H 1.09006 * 109.47384 * 214.86342 * 1 2 3 27 27 H 1.09004 * 109.47370 * 334.87136 * 1 2 3 28 28 H 1.07991 * 128.00753 * 359.96171 * 3 2 1 29 29 H 1.09000 * 109.47537 * 64.23384 * 9 8 6 30 30 H 1.09003 * 109.47344 * 304.23056 * 9 8 6 31 31 H 0.97006 * 120.00560 * 184.95673 * 14 13 11 32 32 H 1.09003 * 117.49537 * 0.02562 * 19 10 9 33 33 H 1.09003 * 117.49687 * 144.99619 * 19 10 9 34 34 H 1.09005 * 117.49669 * 107.50220 * 20 19 10 35 35 H 1.08996 * 117.50114 * 252.51501 * 20 19 10 36 36 H 1.09004 * 117.49838 * 214.96811 * 21 5 4 37 37 H 1.08995 * 117.50495 * 359.97438 * 21 5 4 38 38 H 1.09003 * 117.49730 * 252.50847 * 22 21 5 39 39 H 1.09005 * 117.50360 * 107.48920 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 0.0006 5 6 4.9021 1.3695 0.0003 6 6 4.9564 2.5611 -0.9208 7 8 6.0177 2.9404 -1.3561 8 8 3.8255 3.2009 -1.2577 9 6 3.9646 4.4251 -2.0259 10 6 2.5879 5.0629 -2.2228 11 6 2.0756 5.8749 -1.0612 12 1 1.0313 5.8296 -0.7896 13 6 2.9400 6.6756 -0.3454 14 7 4.0212 7.1548 -0.9205 15 14 2.5754 7.0799 1.4415 16 1 2.6330 5.8369 2.2521 17 1 3.5832 8.0469 1.9459 18 1 1.2199 7.6774 1.5473 19 6 1.5610 4.2859 -3.0491 20 6 2.2228 5.5361 -3.6320 21 6 5.6672 1.4629 1.3220 22 6 6.1911 0.5690 0.1964 23 8 3.4537 -0.7253 -0.0045 24 7 2.2868 -1.0423 0.0007 25 1 -0.3633 -0.0872 -1.0240 26 1 -0.3634 -0.8432 0.5875 27 1 -0.3634 0.9304 0.4364 28 1 2.0709 2.1743 -0.0006 29 1 4.4015 4.1965 -2.9980 30 1 4.6129 5.1185 -1.4902 31 1 4.6658 7.6580 -0.3987 32 1 1.8662 3.3201 -3.4520 33 1 0.5149 4.3620 -2.7525 34 1 2.9634 5.3931 -4.4189 35 1 1.6122 6.4348 -3.7187 36 1 6.2098 2.3862 1.5253 37 1 5.2304 0.9730 2.1922 38 1 6.0991 -0.5094 0.3260 39 1 7.0784 0.9040 -0.3410 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892751194.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:42 Heat of formation + Delta-G solvation = 30.194693 kcal Electronic energy + Delta-G solvation = -23813.279687 eV Core-core repulsion = 20305.599972 eV Total energy + Delta-G solvation = -3507.679715 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.78685 -40.21442 -37.62586 -36.43924 -35.27500 -34.62331 -32.32038 -31.33564 -28.60733 -27.28713 -25.67391 -24.51519 -23.17082 -22.52741 -21.39657 -21.04748 -19.30439 -19.23755 -17.94184 -17.46124 -16.75276 -16.35312 -15.89410 -15.52354 -14.84764 -14.64898 -14.18926 -13.80212 -13.33392 -13.26840 -13.23702 -12.92087 -12.56332 -12.21646 -12.01613 -11.77955 -11.71949 -11.36976 -11.13619 -11.03358 -10.91388 -10.77528 -10.59272 -10.39952 -10.24177 -9.93385 -9.83346 -9.53554 -9.19403 -9.05747 -8.77687 -8.12760 -6.31106 -4.18121 1.49013 2.32759 2.47886 2.86327 3.15122 3.22472 3.30362 3.33516 3.75642 4.24105 4.31266 4.32483 4.63505 4.74325 4.80113 4.98325 5.13878 5.39184 5.43354 5.45274 5.52646 5.61525 5.64916 5.72301 5.86833 5.90944 5.94368 6.02592 6.14262 6.29664 6.39297 6.49726 6.60881 6.63542 6.89338 7.17077 7.24959 7.28100 7.73702 8.25154 8.27589 8.36264 8.74275 9.37599 10.77973 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.013339 B = 0.006144 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.605088 B = 4556.267069 C = 4992.266887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.015 3.985 3 C -0.186 4.186 4 C -0.005 4.005 5 C -0.069 4.069 6 C 0.502 3.498 7 O -0.507 6.507 8 O -0.334 6.334 9 C 0.105 3.895 10 C 0.048 3.952 11 C -0.496 4.496 12 H 0.066 0.934 13 C 0.077 3.923 14 N -0.861 5.861 15 Si 0.874 3.126 16 H -0.273 1.273 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.197 4.197 20 C -0.188 4.188 21 C -0.127 4.127 22 C -0.132 4.132 23 O 0.097 5.903 24 N -0.371 5.371 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.188 0.812 29 H 0.041 0.959 30 H 0.104 0.896 31 H 0.265 0.735 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.042 -11.945 3.472 12.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.143 4.143 3 C -0.207 4.207 4 C -0.069 4.069 5 C -0.071 4.071 6 C 0.344 3.656 7 O -0.397 6.397 8 O -0.249 6.249 9 C 0.033 3.967 10 C 0.047 3.953 11 C -0.532 4.532 12 H 0.084 0.916 13 C -0.128 4.128 14 N -0.496 5.496 15 Si 0.700 3.300 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.235 4.235 20 C -0.226 4.226 21 C -0.164 4.164 22 C -0.169 4.169 23 O 0.030 5.970 24 N -0.076 5.076 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.205 0.795 29 H 0.059 0.941 30 H 0.122 0.878 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.145 -12.929 3.306 13.346 hybrid contribution -0.193 1.247 0.677 1.432 sum -0.049 -11.682 3.982 12.342 Atomic orbital electron populations 1.20162 0.85894 1.03744 1.03361 1.23627 0.99083 0.88817 1.02750 1.22739 0.90323 1.02086 1.05596 1.22700 0.95593 0.83373 1.05188 1.18802 0.89632 0.96145 1.02564 1.21562 0.83018 0.82505 0.78553 1.90645 1.31347 1.66113 1.51572 1.86448 1.33122 1.38827 1.66460 1.22979 1.00230 0.80571 0.92961 1.18820 0.89582 0.96130 0.90734 1.20376 0.95694 1.24614 1.12512 0.91580 1.24903 0.95819 0.93799 0.98250 1.70172 1.12524 1.31903 1.35037 0.86929 0.78462 0.78308 0.86268 1.19859 1.21237 1.19861 1.22800 0.98556 0.94378 1.07724 1.23007 1.03522 0.97213 0.98827 1.23266 0.99622 1.03126 0.90392 1.23252 0.94304 0.98684 1.00626 1.84738 1.21772 1.22262 1.68234 1.73790 0.89213 1.24011 1.20597 0.90186 0.90880 0.89643 0.79499 0.94095 0.87803 0.92531 0.91222 0.90234 0.91587 0.89649 0.86604 0.86863 0.86655 0.86167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.47 36.00 0.38 -0.45 16 2 C 0.02 0.23 7.33 -82.10 -0.60 -0.38 16 3 C -0.19 -2.99 9.98 -39.38 -0.39 -3.38 16 4 C -0.01 -0.08 6.65 -35.30 -0.23 -0.32 16 5 C -0.07 -1.04 2.56 -156.81 -0.40 -1.44 16 6 C 0.50 9.68 7.53 36.01 0.27 9.95 16 7 O -0.51 -10.70 16.05 -18.75 -0.30 -11.00 16 8 O -0.33 -7.08 8.06 -39.27 -0.32 -7.40 16 9 C 0.10 2.46 5.18 37.16 0.19 2.65 16 10 C 0.05 1.14 1.93 -155.62 -0.30 0.84 16 11 C -0.50 -12.88 8.91 -34.44 -0.31 -13.18 16 12 H 0.07 1.71 7.95 -52.49 -0.42 1.29 16 13 C 0.08 2.01 4.88 -17.82 -0.09 1.92 16 14 N -0.86 -23.35 11.71 55.43 0.65 -22.70 16 15 Si 0.87 19.96 29.62 -169.99 -5.03 14.92 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 C -0.20 -4.11 9.93 -26.73 -0.27 -4.38 16 20 C -0.19 -4.13 9.89 -26.69 -0.26 -4.40 16 21 C -0.13 -1.51 9.94 -26.73 -0.27 -1.78 16 22 C -0.13 -1.53 9.69 -26.73 -0.26 -1.79 16 23 O 0.10 1.47 10.99 17.19 0.19 1.66 16 24 N -0.37 -5.81 12.07 33.42 0.40 -5.41 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.19 3.20 7.19 -52.49 -0.38 2.82 16 29 H 0.04 0.93 7.94 -51.93 -0.41 0.52 16 30 H 0.10 2.70 5.85 -51.93 -0.30 2.40 16 31 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 35 H 0.08 1.90 8.14 -51.93 -0.42 1.47 16 36 H 0.12 1.39 8.14 -51.93 -0.42 0.96 16 37 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.12 1.10 8.02 -51.93 -0.42 0.69 16 39 H 0.12 1.40 7.70 -51.93 -0.40 1.00 16 LS Contribution 340.85 15.07 5.14 5.14 Total: -1.00 -28.93 340.85 -7.08 -36.01 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.26 Total: 4.91 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -2.54 Total: -16.13 kcal Atomic # 7 Polarization: -29.16 SS G_CDS: 1.05 Total: -28.11 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.43 Total: -16.74 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.92 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.93 -7.08 -36.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892751194.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.200 kcal (2) G-P(sol) polarization free energy of solvation -28.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds