Wall clock time and date at job start Tue Mar 31 2020 06:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41385 * 126.80116 * 2 1 4 4 C 1.35454 * 103.98102 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.77109 * 179.97438 * 4 3 2 6 6 C 1.50701 * 115.55464 * 317.39829 * 5 4 3 7 7 O 1.20822 * 120.00464 * 206.22296 * 6 5 4 8 8 O 1.34235 * 119.99770 * 26.22050 * 6 5 4 9 9 C 1.45188 * 116.99944 * 173.36223 * 8 6 5 10 10 C 1.53002 * 109.47148 * 184.23299 * 9 8 6 11 11 C 1.50704 * 115.54751 * 81.22060 * 10 9 8 12 12 H 1.07998 * 119.99989 * 219.30534 * 11 10 9 13 13 C 1.37870 * 120.00164 * 39.31393 * 11 10 9 14 14 N 1.31511 * 120.00208 * 26.64806 * 13 11 10 15 15 Si 1.86798 * 120.00006 * 206.65537 * 13 11 10 16 16 H 1.48503 * 109.47521 * 64.99296 * 15 13 11 17 17 H 1.48503 * 109.47423 * 184.99712 * 15 13 11 18 18 H 1.48508 * 109.47092 * 304.99391 * 15 13 11 19 19 C 1.52999 * 117.49966 * 295.55106 * 10 9 8 20 20 C 1.52999 * 60.03152 * 252.49639 * 19 10 9 21 21 C 1.53001 * 117.51697 * 103.10201 * 5 4 3 22 22 C 1.52995 * 60.00219 * 107.48026 * 21 5 4 23 23 O 1.34036 * 106.44897 * 0.23815 * 4 3 2 24 24 N 1.20921 * 111.56857 * 359.56307 * 23 4 3 25 25 H 1.09002 * 109.47076 * 94.86505 * 1 2 3 26 26 H 1.09006 * 109.47384 * 214.86342 * 1 2 3 27 27 H 1.09004 * 109.47370 * 334.87136 * 1 2 3 28 28 H 1.07991 * 128.00753 * 359.96171 * 3 2 1 29 29 H 1.09000 * 109.47537 * 64.23384 * 9 8 6 30 30 H 1.09003 * 109.47344 * 304.23056 * 9 8 6 31 31 H 0.97006 * 120.00560 * 184.95673 * 14 13 11 32 32 H 1.09003 * 117.49537 * 0.02562 * 19 10 9 33 33 H 1.09003 * 117.49687 * 144.99619 * 19 10 9 34 34 H 1.09005 * 117.49669 * 107.50220 * 20 19 10 35 35 H 1.08996 * 117.50114 * 252.51501 * 20 19 10 36 36 H 1.09004 * 117.49838 * 214.96811 * 21 5 4 37 37 H 1.08995 * 117.50495 * 359.97438 * 21 5 4 38 38 H 1.09003 * 117.49730 * 252.50847 * 22 21 5 39 39 H 1.09005 * 117.50360 * 107.48920 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 0.0006 5 6 4.9021 1.3695 0.0003 6 6 4.9564 2.5611 -0.9208 7 8 6.0177 2.9404 -1.3561 8 8 3.8255 3.2009 -1.2577 9 6 3.9646 4.4251 -2.0259 10 6 2.5879 5.0629 -2.2228 11 6 2.0756 5.8749 -1.0612 12 1 1.0313 5.8296 -0.7896 13 6 2.9400 6.6756 -0.3454 14 7 4.0212 7.1548 -0.9205 15 14 2.5754 7.0799 1.4415 16 1 2.6330 5.8369 2.2521 17 1 3.5832 8.0469 1.9459 18 1 1.2199 7.6774 1.5473 19 6 1.5610 4.2859 -3.0491 20 6 2.2228 5.5361 -3.6320 21 6 5.6672 1.4629 1.3220 22 6 6.1911 0.5690 0.1964 23 8 3.4537 -0.7253 -0.0045 24 7 2.2868 -1.0423 0.0007 25 1 -0.3633 -0.0872 -1.0240 26 1 -0.3634 -0.8432 0.5875 27 1 -0.3634 0.9304 0.4364 28 1 2.0709 2.1743 -0.0006 29 1 4.4015 4.1965 -2.9980 30 1 4.6129 5.1185 -1.4902 31 1 4.6658 7.6580 -0.3987 32 1 1.8662 3.3201 -3.4520 33 1 0.5149 4.3620 -2.7525 34 1 2.9634 5.3931 -4.4189 35 1 1.6122 6.4348 -3.7187 36 1 6.2098 2.3862 1.5253 37 1 5.2304 0.9730 2.1922 38 1 6.0991 -0.5094 0.3260 39 1 7.0784 0.9040 -0.3410 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892751194.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:41 Heat of formation + Delta-G solvation = 16.687100 kcal Electronic energy + Delta-G solvation = -23813.865421 eV Core-core repulsion = 20305.599972 eV Total energy + Delta-G solvation = -3508.265448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.95239 -41.71902 -39.10092 -37.93366 -36.91703 -35.73805 -34.28886 -32.48853 -29.60797 -28.96405 -27.57034 -25.94467 -24.33415 -23.51229 -23.05556 -22.43245 -21.16854 -20.53582 -19.24958 -18.69657 -18.49394 -17.64747 -17.45286 -17.21017 -16.56211 -15.93681 -15.74426 -15.30273 -14.76972 -14.40647 -14.17257 -14.13237 -13.99253 -13.74971 -13.62417 -13.31881 -12.98022 -12.76148 -12.64986 -12.51113 -12.38295 -12.15307 -12.10964 -11.98842 -11.80678 -11.65067 -11.28764 -11.04039 -10.94398 -10.60510 -10.25485 -10.05010 -8.29019 -6.20023 0.31152 0.95835 1.21304 1.40055 1.44826 1.51166 1.56149 1.85470 2.41101 2.64222 2.89225 3.15398 3.25142 3.40416 3.59844 3.71954 3.77228 4.01388 4.11863 4.28570 4.33094 4.48428 4.54679 4.56427 4.60787 4.68532 4.70801 4.80520 4.88251 4.89853 4.92040 5.00296 5.04625 5.13949 5.27997 5.37846 5.49944 5.58675 5.73576 6.30973 6.67919 6.75057 7.20073 7.37173 8.80046 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.013339 B = 0.006144 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.605088 B = 4556.267069 C = 4992.266887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.018 3.982 3 C -0.207 4.207 4 C 0.002 3.998 5 C -0.096 4.096 6 C 0.496 3.504 7 O -0.532 6.532 8 O -0.338 6.338 9 C 0.116 3.884 10 C 0.017 3.983 11 C -0.510 4.510 12 H 0.061 0.939 13 C 0.036 3.964 14 N -0.891 5.891 15 Si 0.929 3.071 16 H -0.268 1.268 17 H -0.287 1.287 18 H -0.268 1.268 19 C -0.170 4.170 20 C -0.188 4.188 21 C -0.112 4.112 22 C -0.109 4.109 23 O 0.098 5.902 24 N -0.384 5.384 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.173 0.827 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.264 0.736 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.586 -13.552 4.493 14.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.140 4.140 3 C -0.228 4.228 4 C -0.062 4.062 5 C -0.098 4.098 6 C 0.340 3.660 7 O -0.423 6.423 8 O -0.253 6.253 9 C 0.043 3.957 10 C 0.016 3.984 11 C -0.546 4.546 12 H 0.080 0.920 13 C -0.166 4.166 14 N -0.527 5.527 15 Si 0.754 3.246 16 H -0.193 1.193 17 H -0.213 1.213 18 H -0.193 1.193 19 C -0.208 4.208 20 C -0.226 4.226 21 C -0.149 4.149 22 C -0.145 4.145 23 O 0.033 5.967 24 N -0.091 5.091 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.113 0.887 28 H 0.190 0.810 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.132 0.868 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.404 -14.548 4.332 15.185 hybrid contribution -0.011 1.733 0.320 1.762 sum -0.415 -12.816 4.652 13.640 Atomic orbital electron populations 1.20326 0.83582 1.04943 1.04405 1.24087 1.00555 0.87955 1.01377 1.22698 0.91202 1.01824 1.07086 1.22699 0.95515 0.83560 1.04378 1.18817 0.91275 0.95621 1.04128 1.22370 0.82120 0.83117 0.78433 1.90622 1.31893 1.67171 1.52614 1.86468 1.34318 1.38101 1.66456 1.22601 0.99525 0.81004 0.92585 1.18895 0.90722 0.97721 0.91067 1.20620 0.95629 1.24744 1.13638 0.92035 1.25540 0.95803 0.93848 1.01383 1.70249 1.13463 1.32902 1.36110 0.86053 0.78322 0.78163 0.82047 1.19271 1.21272 1.19261 1.22787 0.98270 0.94367 1.05335 1.23002 1.03801 0.97767 0.98042 1.23480 0.97975 1.03355 0.90061 1.23449 0.91932 0.99897 0.99226 1.84723 1.21782 1.21826 1.68348 1.73778 0.89409 1.24335 1.21607 0.89165 0.89349 0.88734 0.80982 0.94249 0.90794 0.92702 0.89818 0.89302 0.90557 0.90232 0.86828 0.84343 0.83956 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 10.47 71.23 0.75 -0.77 16 2 C 0.02 0.51 7.33 43.58 0.32 0.83 16 3 C -0.21 -6.46 9.98 22.40 0.22 -6.24 16 4 C 0.00 0.05 6.65 25.04 0.17 0.22 16 5 C -0.10 -2.78 2.56 -53.67 -0.14 -2.92 16 6 C 0.50 19.18 7.53 71.24 0.54 19.71 16 7 O -0.53 -22.74 16.05 21.98 0.35 -22.38 16 8 O -0.34 -14.54 8.06 -51.46 -0.41 -14.95 16 9 C 0.12 5.54 5.18 71.98 0.37 5.92 16 10 C 0.02 0.79 1.93 -52.90 -0.10 0.69 16 11 C -0.51 -26.68 8.91 25.60 0.23 -26.45 16 12 H 0.06 3.18 7.95 -2.91 -0.02 3.16 16 13 C 0.04 1.91 4.88 84.65 0.41 2.32 16 14 N -0.89 -49.30 11.71 21.44 0.25 -49.05 16 15 Si 0.93 41.10 29.62 68.60 2.03 43.14 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 17 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 C -0.17 -6.92 9.93 30.59 0.30 -6.61 16 20 C -0.19 -8.23 9.89 30.62 0.30 -7.92 16 21 C -0.11 -2.41 9.94 30.59 0.30 -2.11 16 22 C -0.11 -2.25 9.69 30.59 0.30 -1.96 16 23 O 0.10 2.81 10.99 71.67 0.79 3.60 16 24 N -0.38 -11.38 12.07 -49.56 -0.60 -11.98 16 25 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.17 5.92 7.19 -2.92 -0.02 5.90 16 29 H 0.04 1.83 7.94 -2.39 -0.02 1.81 16 30 H 0.07 3.99 5.85 -2.39 -0.01 3.97 16 31 H 0.26 13.99 8.32 -92.70 -0.77 13.22 16 32 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 33 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 34 H 0.08 3.13 8.08 -2.38 -0.02 3.11 16 35 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 36 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.14 2.20 8.02 -2.39 -0.02 2.19 16 39 H 0.12 2.55 7.70 -2.38 -0.02 2.53 16 Total: -1.00 -62.30 340.85 7.44 -54.85 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 1.06 Total: 22.06 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 3.97 Total: -25.28 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -0.35 Total: -61.03 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: 0.73 Total: -33.74 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.14 kcal Total: -62.30 7.44 -54.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892751194.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.541 kcal (2) G-P(sol) polarization free energy of solvation -62.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds