Wall clock time and date at job start Tue Mar 31 2020 06:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.62761 * 2 1 4 4 O 1.43748 * 109.63314 * 239.75479 * 2 1 3 5 5 C 1.44778 * 104.82048 * 264.43462 * 4 2 1 6 6 C 1.54919 * 101.72031 * 323.89658 * 5 4 2 7 7 H 1.09000 * 110.84148 * 277.09107 * 6 5 4 8 8 C 1.50694 * 110.69669 * 153.95800 * 6 5 4 9 9 O 1.21292 * 120.00326 * 249.89192 * 8 6 5 10 10 N 1.34784 * 120.00363 * 69.88332 * 8 6 5 11 11 C 1.39933 * 120.00373 * 184.44414 * 10 8 6 12 12 C 1.39289 * 119.95010 * 213.83123 * 11 10 8 13 13 C 1.38491 * 120.42849 * 180.02562 * 12 11 10 14 14 C 1.37682 * 120.31875 * 359.97438 * 13 12 11 15 15 C 1.40738 * 119.89193 * 0.02562 * 14 13 12 16 16 C 1.41401 * 120.21137 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99970 * 201.04738 * 16 15 14 18 18 C 1.39931 * 120.00383 * 21.05511 * 16 15 14 19 19 N 1.30826 * 119.99885 * 216.41893 * 18 16 15 20 20 Si 1.86804 * 119.99814 * 36.41358 * 18 16 15 21 21 H 1.48499 * 109.46974 * 265.57833 * 20 18 16 22 22 H 1.48500 * 109.46837 * 25.57794 * 20 18 16 23 23 H 1.48500 * 109.46822 * 145.57756 * 20 18 16 24 24 C 1.38251 * 119.94483 * 34.13968 * 11 10 8 25 25 O 1.43371 * 109.63149 * 120.39234 * 2 1 3 26 26 H 1.09000 * 109.46823 * 299.60259 * 1 2 3 27 27 H 1.08993 * 109.47152 * 59.60899 * 1 2 3 28 28 H 1.08999 * 109.46764 * 179.60814 * 1 2 3 29 29 H 1.09004 * 109.47334 * 180.38960 * 3 2 1 30 30 H 1.08993 * 109.47301 * 300.39379 * 3 2 1 31 31 H 1.09010 * 109.47015 * 60.39388 * 3 2 1 32 32 H 1.09003 * 110.98275 * 205.78835 * 5 4 2 33 33 H 1.09007 * 110.97959 * 82.00181 * 5 4 2 34 34 H 0.97000 * 119.98998 * 4.45889 * 10 8 6 35 35 H 1.08004 * 119.78258 * 0.05270 * 12 11 10 36 36 H 1.07993 * 119.83731 * 180.02562 * 13 12 11 37 37 H 1.08007 * 120.05138 * 180.02562 * 14 13 12 38 38 H 0.96991 * 120.00554 * 5.10184 * 19 18 16 39 39 H 1.07995 * 120.15871 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 8 2.0130 -0.6820 -1.1696 5 6 2.2653 -2.0381 -0.7299 6 6 2.7885 -1.8097 0.7103 7 1 3.8512 -1.5671 0.7029 8 6 2.5264 -3.0191 1.5702 9 8 1.6996 -2.9657 2.4561 10 7 3.2105 -4.1603 1.3549 11 6 2.9026 -5.3101 2.0906 12 6 3.9117 -6.2063 2.4350 13 6 3.6180 -7.3476 3.1624 14 6 2.3241 -7.6086 3.5537 15 6 1.2939 -6.7123 3.2130 16 6 -0.0375 -6.9740 3.6109 17 1 -0.8589 -6.5052 3.0895 18 6 -0.2908 -7.8402 4.6803 19 7 -1.3306 -8.6334 4.6474 20 14 0.8560 -7.8640 6.1547 21 1 1.8708 -8.9331 5.9752 22 1 1.5371 -6.5498 6.2732 23 1 0.0715 -8.1280 7.3876 24 6 1.5961 -5.5581 2.4688 25 8 2.0117 -0.6832 1.1648 26 1 -0.3633 0.5077 0.8935 27 1 -0.3633 0.5199 -0.8864 28 1 -0.3633 -1.0277 -0.0070 29 1 3.1339 1.4382 -0.0070 30 1 1.6763 1.9580 -0.8864 31 1 1.6877 1.9539 0.8936 32 1 3.0246 -2.5146 -1.3500 33 1 1.3457 -2.6235 -0.7227 34 1 3.9164 -4.1844 0.6901 35 1 4.9299 -6.0095 2.1332 36 1 4.4080 -8.0357 3.4246 37 1 2.0999 -8.4998 4.1212 38 1 -1.8839 -8.6751 3.8518 39 1 0.8123 -4.8662 2.1983 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181745344.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:45 Heat of formation + Delta-G solvation = -106.096168 kcal Electronic energy + Delta-G solvation = -23160.046364 eV Core-core repulsion = 19646.456634 eV Total energy + Delta-G solvation = -3513.589730 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.10280 -39.45986 -37.32136 -35.23488 -34.56457 -33.48186 -33.09900 -30.17357 -29.74764 -28.00155 -27.60251 -24.95303 -24.46410 -21.88973 -21.36032 -20.77877 -19.90457 -18.43274 -17.81038 -17.26458 -16.45700 -15.96675 -15.45011 -15.28590 -14.79820 -14.50966 -14.05628 -13.91050 -13.65951 -13.47635 -13.32316 -12.82026 -12.74625 -12.43131 -12.41121 -12.33268 -12.06944 -11.96861 -11.81259 -11.41503 -11.15010 -10.76350 -10.54642 -10.35168 -10.11592 -10.03735 -9.69233 -9.56448 -9.10472 -8.85126 -7.74183 -7.43541 -7.17614 -4.50201 2.31848 2.70591 2.71686 3.07264 3.23276 3.38080 3.42745 3.57675 3.82702 4.03663 4.25698 4.41846 4.52108 4.57784 4.72205 4.77525 5.01835 5.22392 5.34754 5.41929 5.42952 5.45957 5.51287 5.67701 5.85589 5.99963 6.02446 6.23464 6.46596 6.67925 6.77534 6.83998 6.87373 7.30775 7.48231 7.51590 7.67160 7.81101 7.93024 8.01132 8.36792 8.48058 8.64121 8.78034 9.84958 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024375 B = 0.003934 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.457103 B = 7115.431608 C = 7684.328063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.246 3.754 3 C -0.152 4.152 4 O -0.369 6.369 5 C 0.030 3.970 6 C 0.037 3.963 7 H 0.110 0.890 8 C 0.503 3.497 9 O -0.486 6.486 10 N -0.665 5.665 11 C 0.167 3.833 12 C -0.280 4.280 13 C -0.057 4.057 14 C -0.260 4.260 15 C 0.108 3.892 16 C -0.519 4.519 17 H 0.079 0.921 18 C 0.058 3.942 19 N -0.789 5.789 20 Si 1.061 2.939 21 H -0.272 1.272 22 H -0.264 1.264 23 H -0.285 1.285 24 C -0.213 4.213 25 O -0.346 6.346 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.400 0.600 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.291 0.709 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.766 12.686 -9.980 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.170 3.830 3 C -0.210 4.210 4 O -0.289 6.289 5 C -0.047 4.047 6 C -0.025 4.025 7 H 0.128 0.872 8 C 0.286 3.714 9 O -0.358 6.358 10 N -0.311 5.311 11 C 0.075 3.925 12 C -0.301 4.301 13 C -0.076 4.076 14 C -0.279 4.279 15 C 0.104 3.896 16 C -0.545 4.545 17 H 0.097 0.903 18 C -0.166 4.166 19 N -0.409 5.409 20 Si 0.885 3.115 21 H -0.198 1.198 22 H -0.188 1.188 23 H -0.212 1.212 24 C -0.234 4.234 25 O -0.266 6.266 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.136 0.864 33 H 0.102 0.898 34 H 0.234 0.766 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.188 12.255 -7.889 16.251 hybrid contribution 0.053 0.512 -1.972 2.038 sum 7.242 12.767 -9.862 17.683 Atomic orbital electron populations 1.22373 0.93474 1.03823 1.03278 1.23526 0.93439 0.91464 0.74584 1.22066 1.02405 0.93128 1.03355 1.89246 1.86000 1.21482 1.32213 1.24296 1.02354 0.85431 0.92582 1.23607 0.98082 0.87161 0.93633 0.87248 1.20140 0.82672 0.83455 0.85082 1.90821 1.32015 1.82572 1.30364 1.43369 1.37866 1.09474 1.40389 1.17451 0.94012 0.85317 0.95705 1.19949 0.95990 1.00169 1.13993 1.20356 0.95665 0.95358 0.96219 1.21036 0.93440 1.01963 1.11475 1.17499 0.92861 0.89197 0.90021 1.20558 0.93216 1.24915 1.15860 0.90327 1.27300 0.97552 0.89371 1.02392 1.70556 1.13095 1.24915 1.32303 0.83814 0.75031 0.78903 0.73724 1.19839 1.18809 1.21150 1.20856 0.93461 0.99231 1.09851 1.89035 1.69268 1.39602 1.28706 0.90410 0.90634 0.91521 0.91395 0.90580 0.90245 0.86373 0.89797 0.76584 0.88840 0.88541 0.88013 0.89773 0.87507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.20 37.16 0.34 -1.61 16 2 C 0.25 2.99 1.47 -26.73 -0.04 2.95 16 3 C -0.15 -1.43 9.24 37.16 0.34 -1.08 16 4 O -0.37 -4.38 11.00 -59.04 -0.65 -5.03 16 5 C 0.03 0.33 7.35 38.17 0.28 0.61 16 6 C 0.04 0.48 4.11 -26.87 -0.11 0.37 16 7 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 8 C 0.50 8.80 6.94 -10.99 -0.08 8.72 16 9 O -0.49 -11.18 14.27 -13.47 -0.19 -11.37 16 10 N -0.66 -10.96 5.34 -9.91 -0.05 -11.01 16 11 C 0.17 3.59 6.26 -83.76 -0.52 3.06 16 12 C -0.28 -5.75 9.97 -39.10 -0.39 -6.14 16 13 C -0.06 -1.24 10.02 -39.69 -0.40 -1.64 16 14 C -0.26 -6.41 7.71 -38.84 -0.30 -6.70 16 15 C 0.11 2.87 5.21 -106.85 -0.56 2.31 16 16 C -0.52 -14.41 9.28 -37.75 -0.35 -14.76 16 17 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 18 C 0.06 1.54 5.11 -17.35 -0.09 1.45 16 19 N -0.79 -21.00 13.65 55.55 0.76 -20.25 16 20 Si 1.06 24.47 25.78 -169.99 -4.38 20.08 16 21 H -0.27 -5.91 6.53 56.52 0.37 -5.54 16 22 H -0.26 -6.23 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 24 C -0.21 -5.37 8.39 -38.68 -0.32 -5.69 16 25 O -0.35 -5.22 10.15 -66.00 -0.67 -5.89 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 34 H 0.40 4.70 8.82 -40.82 -0.36 4.34 16 35 H 0.09 1.62 8.06 -52.48 -0.42 1.20 16 36 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.10 2.48 4.93 -52.48 -0.26 2.22 16 38 H 0.29 7.52 8.73 -40.82 -0.36 7.17 16 39 H 0.11 2.81 6.43 -52.49 -0.34 2.48 16 LS Contribution 327.46 15.07 4.93 4.93 Total: -1.00 -32.17 327.46 -7.66 -39.82 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.21 Total: 6.87 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -2.19 Total: -18.16 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.71 Total: -31.26 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -1.51 Total: -22.29 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -4.38 Total: 20.08 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.17 -7.66 -39.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181745344.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.276 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds