Wall clock time and date at job start Tue Mar 31 2020 06:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.62761 * 2 1 4 4 O 1.43748 * 109.63314 * 239.75479 * 2 1 3 5 5 C 1.44778 * 104.82048 * 264.43462 * 4 2 1 6 6 C 1.54919 * 101.72031 * 323.89658 * 5 4 2 7 7 H 1.09000 * 110.84148 * 277.09107 * 6 5 4 8 8 C 1.50694 * 110.69669 * 153.95800 * 6 5 4 9 9 O 1.21292 * 120.00326 * 249.89192 * 8 6 5 10 10 N 1.34784 * 120.00363 * 69.88332 * 8 6 5 11 11 C 1.39933 * 120.00373 * 184.44414 * 10 8 6 12 12 C 1.39289 * 119.95010 * 213.83123 * 11 10 8 13 13 C 1.38491 * 120.42849 * 180.02562 * 12 11 10 14 14 C 1.37682 * 120.31875 * 359.97438 * 13 12 11 15 15 C 1.40738 * 119.89193 * 0.02562 * 14 13 12 16 16 C 1.41401 * 120.21137 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99970 * 201.04738 * 16 15 14 18 18 C 1.39931 * 120.00383 * 21.05511 * 16 15 14 19 19 N 1.30826 * 119.99885 * 216.41893 * 18 16 15 20 20 Si 1.86804 * 119.99814 * 36.41358 * 18 16 15 21 21 H 1.48499 * 109.46974 * 265.57833 * 20 18 16 22 22 H 1.48500 * 109.46837 * 25.57794 * 20 18 16 23 23 H 1.48500 * 109.46822 * 145.57756 * 20 18 16 24 24 C 1.38251 * 119.94483 * 34.13968 * 11 10 8 25 25 O 1.43371 * 109.63149 * 120.39234 * 2 1 3 26 26 H 1.09000 * 109.46823 * 299.60259 * 1 2 3 27 27 H 1.08993 * 109.47152 * 59.60899 * 1 2 3 28 28 H 1.08999 * 109.46764 * 179.60814 * 1 2 3 29 29 H 1.09004 * 109.47334 * 180.38960 * 3 2 1 30 30 H 1.08993 * 109.47301 * 300.39379 * 3 2 1 31 31 H 1.09010 * 109.47015 * 60.39388 * 3 2 1 32 32 H 1.09003 * 110.98275 * 205.78835 * 5 4 2 33 33 H 1.09007 * 110.97959 * 82.00181 * 5 4 2 34 34 H 0.97000 * 119.98998 * 4.45889 * 10 8 6 35 35 H 1.08004 * 119.78258 * 0.05270 * 12 11 10 36 36 H 1.07993 * 119.83731 * 180.02562 * 13 12 11 37 37 H 1.08007 * 120.05138 * 180.02562 * 14 13 12 38 38 H 0.96991 * 120.00554 * 5.10184 * 19 18 16 39 39 H 1.07995 * 120.15871 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 8 2.0130 -0.6820 -1.1696 5 6 2.2653 -2.0381 -0.7299 6 6 2.7885 -1.8097 0.7103 7 1 3.8512 -1.5671 0.7029 8 6 2.5264 -3.0191 1.5702 9 8 1.6996 -2.9657 2.4561 10 7 3.2105 -4.1603 1.3549 11 6 2.9026 -5.3101 2.0906 12 6 3.9117 -6.2063 2.4350 13 6 3.6180 -7.3476 3.1624 14 6 2.3241 -7.6086 3.5537 15 6 1.2939 -6.7123 3.2130 16 6 -0.0375 -6.9740 3.6109 17 1 -0.8589 -6.5052 3.0895 18 6 -0.2908 -7.8402 4.6803 19 7 -1.3306 -8.6334 4.6474 20 14 0.8560 -7.8640 6.1547 21 1 1.8708 -8.9331 5.9752 22 1 1.5371 -6.5498 6.2732 23 1 0.0715 -8.1280 7.3876 24 6 1.5961 -5.5581 2.4688 25 8 2.0117 -0.6832 1.1648 26 1 -0.3633 0.5077 0.8935 27 1 -0.3633 0.5199 -0.8864 28 1 -0.3633 -1.0277 -0.0070 29 1 3.1339 1.4382 -0.0070 30 1 1.6763 1.9580 -0.8864 31 1 1.6877 1.9539 0.8936 32 1 3.0246 -2.5146 -1.3500 33 1 1.3457 -2.6235 -0.7227 34 1 3.9164 -4.1844 0.6901 35 1 4.9299 -6.0095 2.1332 36 1 4.4080 -8.0357 3.4246 37 1 2.0999 -8.4998 4.1212 38 1 -1.8839 -8.6751 3.8518 39 1 0.8123 -4.8662 2.1983 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181745344.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:44 Heat of formation + Delta-G solvation = -128.560995 kcal Electronic energy + Delta-G solvation = -23161.020512 eV Core-core repulsion = 19646.456634 eV Total energy + Delta-G solvation = -3514.563878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.19868 -40.89142 -39.07102 -36.45788 -36.09893 -35.20091 -34.12816 -32.03682 -31.12121 -29.38649 -28.44161 -26.86816 -25.59137 -23.47040 -22.61670 -22.28642 -21.44874 -20.27906 -18.90301 -18.59899 -17.59194 -17.40251 -17.10199 -16.44297 -16.25292 -15.96148 -15.71776 -15.40892 -14.89551 -14.73455 -14.52679 -14.26455 -14.22623 -13.83561 -13.68407 -13.29610 -13.26357 -13.13431 -12.96580 -12.89796 -12.75139 -12.57668 -12.18037 -11.90590 -11.66728 -11.43160 -11.32920 -10.99377 -10.76252 -10.60227 -9.65890 -9.46638 -8.92450 -6.56545 0.63608 0.84541 1.34685 1.43871 1.55379 1.64664 1.76231 2.16209 2.41140 2.48757 2.83422 3.27138 3.41149 3.50484 3.66961 3.81634 3.88657 4.19316 4.35054 4.36230 4.52966 4.55227 4.58526 4.65175 4.68771 4.71030 4.81969 4.92181 5.01732 5.05181 5.05728 5.18452 5.38836 5.57457 5.71423 5.81983 5.87399 5.91088 6.08010 6.41360 6.48610 6.63304 6.82320 7.13796 7.80317 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024375 B = 0.003934 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.457103 B = 7115.431608 C = 7684.328063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.237 3.763 3 C -0.147 4.147 4 O -0.368 6.368 5 C 0.033 3.967 6 C 0.044 3.956 7 H 0.154 0.846 8 C 0.501 3.499 9 O -0.551 6.551 10 N -0.647 5.647 11 C 0.172 3.828 12 C -0.253 4.253 13 C -0.057 4.057 14 C -0.273 4.273 15 C 0.087 3.913 16 C -0.568 4.568 17 H 0.039 0.961 18 C 0.031 3.969 19 N -0.810 5.810 20 Si 1.094 2.906 21 H -0.243 1.243 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.244 4.244 25 O -0.378 6.378 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.163 0.837 33 H 0.064 0.936 34 H 0.428 0.572 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.102 0.898 38 H 0.283 0.717 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.311 13.447 -11.233 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.161 3.839 3 C -0.204 4.204 4 O -0.288 6.288 5 C -0.044 4.044 6 C -0.017 4.017 7 H 0.171 0.829 8 C 0.287 3.713 9 O -0.426 6.426 10 N -0.295 5.295 11 C 0.079 3.921 12 C -0.273 4.273 13 C -0.075 4.075 14 C -0.292 4.292 15 C 0.084 3.916 16 C -0.595 4.595 17 H 0.057 0.943 18 C -0.188 4.188 19 N -0.430 5.430 20 Si 0.912 3.088 21 H -0.167 1.167 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.265 4.265 25 O -0.299 6.299 26 H 0.095 0.905 27 H 0.116 0.884 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.181 0.819 33 H 0.082 0.918 34 H 0.268 0.732 35 H 0.163 0.837 36 H 0.159 0.841 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.763 13.015 -9.207 19.812 hybrid contribution -1.214 0.418 -1.761 2.179 sum 10.550 13.433 -10.968 20.298 Atomic orbital electron populations 1.22425 0.93843 1.02561 1.04353 1.23817 0.93469 0.92678 0.73948 1.22063 1.02842 0.91138 1.04378 1.89248 1.85891 1.21678 1.32010 1.24435 1.02758 0.85199 0.91990 1.23772 1.00105 0.84637 0.93192 0.82914 1.21073 0.81032 0.84665 0.84494 1.90811 1.34641 1.83755 1.33422 1.43194 1.38339 1.07781 1.40210 1.17560 0.92751 0.86879 0.94911 1.20563 0.97773 0.98307 1.10671 1.20884 0.95318 0.96338 0.94970 1.21187 0.94416 1.01636 1.12007 1.17699 0.92970 0.90251 0.90640 1.20479 0.93237 1.27635 1.18179 0.94319 1.28318 0.98317 0.88491 1.03657 1.70608 1.14130 1.26143 1.32153 0.83420 0.74516 0.78956 0.71864 1.16749 1.20234 1.19455 1.20803 0.94982 0.98957 1.11790 1.89020 1.69923 1.40262 1.30694 0.90546 0.88366 0.93948 0.90668 0.88786 0.89997 0.81921 0.91806 0.73201 0.83681 0.84104 0.88030 0.90646 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 9.20 71.98 0.66 -3.31 16 2 C 0.24 5.41 1.47 30.59 0.04 5.45 16 3 C -0.15 -2.40 9.24 71.98 0.66 -1.74 16 4 O -0.37 -7.80 11.00 -126.22 -1.39 -9.19 16 5 C 0.03 0.63 7.35 72.64 0.53 1.17 16 6 C 0.04 1.04 4.11 30.50 0.13 1.16 16 7 H 0.15 2.35 8.14 -2.39 -0.02 2.33 16 8 C 0.50 17.10 6.94 87.65 0.61 17.70 16 9 O -0.55 -26.34 14.27 15.11 0.22 -26.13 16 10 N -0.65 -19.54 5.34 -303.64 -1.62 -21.16 16 11 C 0.17 7.08 6.26 38.10 0.24 7.32 16 12 C -0.25 -9.13 9.97 22.58 0.23 -8.91 16 13 C -0.06 -2.22 10.02 22.20 0.22 -2.00 16 14 C -0.27 -13.20 7.71 22.75 0.18 -13.02 16 15 C 0.09 4.84 5.21 -21.31 -0.11 4.72 16 16 C -0.57 -34.06 9.28 23.46 0.22 -33.84 16 17 H 0.04 2.51 8.06 -2.91 -0.02 2.49 16 18 C 0.03 1.73 5.11 85.25 0.44 2.17 16 19 N -0.81 -45.47 13.65 21.82 0.30 -45.17 16 20 Si 1.09 49.99 25.78 68.60 1.77 51.76 16 21 H -0.24 -9.89 6.53 99.48 0.65 -9.24 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 C -0.24 -12.75 8.39 22.85 0.19 -12.56 16 25 O -0.38 -11.09 10.15 -119.56 -1.21 -12.30 16 26 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.16 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.50 8.04 -2.38 -0.02 1.48 16 34 H 0.43 7.93 8.82 -92.71 -0.82 7.11 16 35 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 36 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.10 4.85 4.93 -2.91 -0.01 4.83 16 38 H 0.28 15.78 8.73 -92.72 -0.81 14.97 16 39 H 0.08 4.40 6.43 -2.91 -0.02 4.38 16 Total: -1.00 -77.31 327.46 2.45 -74.86 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.16 Total: 23.02 kcal Atomic # 6 Polarization: -39.91 SS G_CDS: 4.24 Total: -35.68 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -1.32 Total: -66.34 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -2.39 Total: -47.62 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 1.77 Total: 51.76 kcal Total: -77.31 2.45 -74.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181745344.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.702 kcal (2) G-P(sol) polarization free energy of solvation -77.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds