Wall clock time and date at job start Tue Mar 31 2020 06:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.63371 * 2 1 4 4 O 1.43751 * 109.63025 * 120.39523 * 2 1 3 5 5 C 1.44782 * 104.82043 * 95.56246 * 4 2 1 6 6 C 1.54921 * 101.72057 * 36.10301 * 5 4 2 7 7 H 1.08993 * 110.69594 * 83.00677 * 6 5 4 8 8 C 1.50696 * 110.69494 * 206.04529 * 6 5 4 9 9 O 1.21287 * 120.00177 * 115.00096 * 8 6 5 10 10 N 1.34776 * 120.00055 * 294.99454 * 8 6 5 11 11 C 1.39938 * 120.00122 * 175.12127 * 10 8 6 12 12 C 1.39287 * 119.94849 * 145.75305 * 11 10 8 13 13 C 1.38484 * 120.43027 * 180.02562 * 12 11 10 14 14 C 1.37686 * 120.32043 * 359.95211 * 13 12 11 15 15 C 1.40738 * 119.88642 * 0.02562 * 14 13 12 16 16 C 1.41407 * 120.20861 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99767 * 205.17994 * 16 15 14 18 18 C 1.39931 * 120.00489 * 25.17947 * 16 15 14 19 19 N 1.30825 * 119.99348 * 16.78319 * 18 16 15 20 20 Si 1.86795 * 120.00358 * 196.78540 * 18 16 15 21 21 H 1.48497 * 109.47441 * 89.99876 * 20 18 16 22 22 H 1.48502 * 109.47064 * 210.00045 * 20 18 16 23 23 H 1.48502 * 109.47170 * 330.00040 * 20 18 16 24 24 C 1.38241 * 119.94470 * 325.47615 * 11 10 8 25 25 O 1.43366 * 109.63094 * 239.75445 * 2 1 3 26 26 H 1.09004 * 109.46732 * 301.06658 * 1 2 3 27 27 H 1.09000 * 109.46668 * 61.06038 * 1 2 3 28 28 H 1.08992 * 109.47280 * 181.06419 * 1 2 3 29 29 H 1.08996 * 109.47317 * 178.94030 * 3 2 1 30 30 H 1.09005 * 109.46425 * 298.94098 * 3 2 1 31 31 H 1.08997 * 109.46660 * 58.93806 * 3 2 1 32 32 H 1.09005 * 110.97843 * 277.99917 * 5 4 2 33 33 H 1.08995 * 111.01349 * 154.22395 * 5 4 2 34 34 H 0.97001 * 119.99927 * 354.84732 * 10 8 6 35 35 H 1.07999 * 119.78737 * 359.97438 * 12 11 10 36 36 H 1.08001 * 119.84229 * 179.97438 * 13 12 11 37 37 H 1.08007 * 120.05517 * 180.02562 * 14 13 12 38 38 H 0.97001 * 120.00042 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.16565 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0441 1.4410 0.0000 4 8 2.0129 -0.6851 1.1679 5 6 2.2651 -2.0401 0.7246 6 6 2.7884 -1.8080 -0.7150 7 1 3.8514 -1.5674 -0.7043 8 6 2.5261 -3.0152 -1.5781 9 8 1.7653 -2.9341 -2.5191 10 7 3.1371 -4.1849 -1.3043 11 6 2.8170 -5.3307 -2.0412 12 6 3.8008 -6.2775 -2.3168 13 6 3.4952 -7.4147 -3.0456 14 6 2.2140 -7.6224 -3.5051 15 6 1.2095 -6.6747 -3.2339 16 6 -0.1087 -6.8815 -3.7021 17 1 -0.7622 -6.0372 -3.8661 18 6 -0.5667 -8.1797 -3.9529 19 7 0.0758 -9.2067 -3.4591 20 14 -2.0953 -8.4463 -4.9929 21 1 -1.7068 -8.5743 -6.4204 22 1 -2.7825 -9.6873 -4.5537 23 1 -3.0120 -7.2892 -4.8313 24 6 1.5237 -5.5239 -2.4894 25 8 2.0117 -0.6802 -1.1665 26 1 -0.3633 0.5303 0.8803 27 1 -0.3633 0.4973 -0.8994 28 1 -0.3633 -1.0274 0.0191 29 1 3.1339 1.4381 0.0190 30 1 1.6977 1.9503 -0.8994 31 1 1.6667 1.9613 0.8803 32 1 1.3456 -2.6254 0.7159 33 1 3.0242 -2.5188 1.3432 34 1 3.8016 -4.2316 -0.5992 35 1 4.8086 -6.1233 -1.9606 36 1 4.2655 -8.1424 -3.2542 37 1 1.9803 -8.5111 -4.0727 38 1 -0.2418 -10.1067 -3.6326 39 1 0.7592 -4.7924 -2.2727 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181745357.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:49 Heat of formation + Delta-G solvation = -102.229951 kcal Electronic energy + Delta-G solvation = -23080.813601 eV Core-core repulsion = 19567.391523 eV Total energy + Delta-G solvation = -3513.422078 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.04719 -39.35821 -37.15809 -35.18448 -34.47967 -33.36298 -32.91834 -29.85636 -29.62398 -27.76556 -27.51598 -25.32969 -24.39394 -21.69788 -21.31074 -20.89430 -19.70801 -17.96320 -17.75556 -16.95803 -16.39712 -15.57147 -15.37548 -15.21866 -14.75476 -14.52769 -14.40093 -13.80977 -13.47496 -13.31115 -13.08951 -12.88432 -12.69656 -12.38137 -12.34587 -12.16794 -12.00620 -11.80517 -11.66163 -11.23254 -11.15176 -10.94353 -10.54073 -10.47136 -10.19652 -9.93415 -9.67267 -9.42730 -9.10245 -8.98884 -7.48578 -6.97827 -6.73944 -4.36266 2.45265 2.78509 2.81743 3.08886 3.13903 3.17207 3.30483 3.48604 3.87685 3.95749 4.31302 4.56772 4.62578 4.63702 4.76755 4.82311 5.07255 5.27830 5.37914 5.45869 5.50085 5.54364 5.68094 5.72487 5.88602 6.03100 6.20688 6.34963 6.65787 6.85308 6.97584 7.00077 7.03870 7.22781 7.50800 7.67242 7.92220 8.06248 8.10017 8.20907 8.54778 8.66715 8.91225 8.95321 10.19615 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.021071 B = 0.003891 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.505412 B = 7194.443158 C = 8127.772505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.246 3.754 3 C -0.152 4.152 4 O -0.369 6.369 5 C 0.029 3.971 6 C 0.036 3.964 7 H 0.110 0.890 8 C 0.504 3.496 9 O -0.490 6.490 10 N -0.663 5.663 11 C 0.150 3.850 12 C -0.260 4.260 13 C -0.092 4.092 14 C -0.170 4.170 15 C 0.120 3.880 16 C -0.458 4.458 17 H 0.079 0.921 18 C 0.076 3.924 19 N -0.795 5.795 20 Si 0.909 3.091 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.211 4.211 25 O -0.346 6.346 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.398 0.602 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.280 0.720 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.568 12.361 8.519 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.169 3.831 3 C -0.209 4.209 4 O -0.290 6.290 5 C -0.048 4.048 6 C -0.025 4.025 7 H 0.128 0.872 8 C 0.288 3.712 9 O -0.362 6.362 10 N -0.309 5.309 11 C 0.059 3.941 12 C -0.281 4.281 13 C -0.111 4.111 14 C -0.190 4.190 15 C 0.117 3.883 16 C -0.488 4.488 17 H 0.097 0.903 18 C -0.141 4.141 19 N -0.420 5.420 20 Si 0.734 3.266 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.232 4.232 25 O -0.266 6.266 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.137 0.863 38 H 0.091 0.909 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.932 12.385 7.867 15.190 hybrid contribution -0.242 -0.405 -0.029 0.473 sum 3.690 11.981 7.838 14.784 Atomic orbital electron populations 1.22373 0.93496 1.03817 1.03255 1.23525 0.93427 0.91463 0.74640 1.22063 1.02392 0.93167 1.03318 1.89242 1.86013 1.21529 1.32193 1.24319 1.02414 0.85406 0.92633 1.23608 0.98081 0.87200 0.93620 0.87240 1.20097 0.82086 0.83438 0.85621 1.90799 1.34130 1.83387 1.27846 1.43344 1.42466 1.07910 1.37206 1.17400 0.94004 0.85609 0.97090 1.20027 0.96320 0.98999 1.12786 1.20468 0.96377 0.95805 0.98439 1.21366 0.91427 1.01837 1.04368 1.17484 0.93208 0.89775 0.87812 1.19606 0.97854 0.92831 1.38491 0.90314 1.25899 0.98589 0.95672 0.93974 1.69821 1.38182 0.99912 1.34108 0.86296 0.81168 0.78564 0.80621 1.19228 1.20326 1.18572 1.20966 0.93690 1.01649 1.06888 1.89035 1.69248 1.39678 1.28649 0.90664 0.90435 0.91494 0.91410 0.90259 0.90627 0.89727 0.86391 0.76768 0.89198 0.88952 0.86256 0.90900 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 9.20 37.16 0.34 -1.63 16 2 C 0.25 3.02 1.47 -26.73 -0.04 2.98 16 3 C -0.15 -1.45 9.24 37.16 0.34 -1.10 16 4 O -0.37 -4.47 11.01 -59.04 -0.65 -5.12 16 5 C 0.03 0.33 7.34 38.17 0.28 0.61 16 6 C 0.04 0.49 4.12 -26.87 -0.11 0.38 16 7 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 8 C 0.50 8.99 6.93 -10.99 -0.08 8.91 16 9 O -0.49 -11.34 14.32 -13.49 -0.19 -11.53 16 10 N -0.66 -11.32 5.33 -9.91 -0.05 -11.37 16 11 C 0.15 3.34 6.25 -83.77 -0.52 2.81 16 12 C -0.26 -5.60 9.97 -39.10 -0.39 -5.99 16 13 C -0.09 -2.12 10.02 -39.69 -0.40 -2.52 16 14 C -0.17 -4.44 8.69 -38.84 -0.34 -4.78 16 15 C 0.12 3.30 5.57 -106.85 -0.59 2.70 16 16 C -0.46 -12.58 9.05 -37.74 -0.34 -12.92 16 17 H 0.08 2.14 7.90 -52.48 -0.41 1.73 16 18 C 0.08 1.94 5.16 -17.35 -0.09 1.85 16 19 N -0.79 -20.58 10.94 55.55 0.61 -19.97 16 20 Si 0.91 19.09 29.59 -169.99 -5.03 14.06 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 24 C -0.21 -5.42 8.39 -38.68 -0.32 -5.75 16 25 O -0.35 -5.28 10.14 -66.01 -0.67 -5.95 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 33 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.40 4.96 8.82 -40.82 -0.36 4.60 16 35 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.12 3.19 6.17 -52.48 -0.32 2.87 16 38 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 39 H 0.10 2.79 6.48 -52.49 -0.34 2.45 16 LS Contribution 330.98 15.07 4.99 4.99 Total: -1.00 -32.13 330.98 -8.48 -40.61 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.22 Total: 8.72 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -2.26 Total: -14.44 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: 0.55 Total: -31.34 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -1.51 Total: -22.60 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.13 -8.48 -40.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181745357.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.620 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds