Wall clock time and date at job start Tue Mar 31 2020 06:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.63371 * 2 1 4 4 O 1.43751 * 109.63025 * 120.39523 * 2 1 3 5 5 C 1.44782 * 104.82043 * 95.56246 * 4 2 1 6 6 C 1.54921 * 101.72057 * 36.10301 * 5 4 2 7 7 H 1.08993 * 110.69594 * 83.00677 * 6 5 4 8 8 C 1.50696 * 110.69494 * 206.04529 * 6 5 4 9 9 O 1.21287 * 120.00177 * 115.00096 * 8 6 5 10 10 N 1.34776 * 120.00055 * 294.99454 * 8 6 5 11 11 C 1.39938 * 120.00122 * 175.12127 * 10 8 6 12 12 C 1.39287 * 119.94849 * 145.75305 * 11 10 8 13 13 C 1.38484 * 120.43027 * 180.02562 * 12 11 10 14 14 C 1.37686 * 120.32043 * 359.95211 * 13 12 11 15 15 C 1.40738 * 119.88642 * 0.02562 * 14 13 12 16 16 C 1.41407 * 120.20861 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99767 * 205.17994 * 16 15 14 18 18 C 1.39931 * 120.00489 * 25.17947 * 16 15 14 19 19 N 1.30825 * 119.99348 * 16.78319 * 18 16 15 20 20 Si 1.86795 * 120.00358 * 196.78540 * 18 16 15 21 21 H 1.48497 * 109.47441 * 89.99876 * 20 18 16 22 22 H 1.48502 * 109.47064 * 210.00045 * 20 18 16 23 23 H 1.48502 * 109.47170 * 330.00040 * 20 18 16 24 24 C 1.38241 * 119.94470 * 325.47615 * 11 10 8 25 25 O 1.43366 * 109.63094 * 239.75445 * 2 1 3 26 26 H 1.09004 * 109.46732 * 301.06658 * 1 2 3 27 27 H 1.09000 * 109.46668 * 61.06038 * 1 2 3 28 28 H 1.08992 * 109.47280 * 181.06419 * 1 2 3 29 29 H 1.08996 * 109.47317 * 178.94030 * 3 2 1 30 30 H 1.09005 * 109.46425 * 298.94098 * 3 2 1 31 31 H 1.08997 * 109.46660 * 58.93806 * 3 2 1 32 32 H 1.09005 * 110.97843 * 277.99917 * 5 4 2 33 33 H 1.08995 * 111.01349 * 154.22395 * 5 4 2 34 34 H 0.97001 * 119.99927 * 354.84732 * 10 8 6 35 35 H 1.07999 * 119.78737 * 359.97438 * 12 11 10 36 36 H 1.08001 * 119.84229 * 179.97438 * 13 12 11 37 37 H 1.08007 * 120.05517 * 180.02562 * 14 13 12 38 38 H 0.97001 * 120.00042 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.16565 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0441 1.4410 0.0000 4 8 2.0129 -0.6851 1.1679 5 6 2.2651 -2.0401 0.7246 6 6 2.7884 -1.8080 -0.7150 7 1 3.8514 -1.5674 -0.7043 8 6 2.5261 -3.0152 -1.5781 9 8 1.7653 -2.9341 -2.5191 10 7 3.1371 -4.1849 -1.3043 11 6 2.8170 -5.3307 -2.0412 12 6 3.8008 -6.2775 -2.3168 13 6 3.4952 -7.4147 -3.0456 14 6 2.2140 -7.6224 -3.5051 15 6 1.2095 -6.6747 -3.2339 16 6 -0.1087 -6.8815 -3.7021 17 1 -0.7622 -6.0372 -3.8661 18 6 -0.5667 -8.1797 -3.9529 19 7 0.0758 -9.2067 -3.4591 20 14 -2.0953 -8.4463 -4.9929 21 1 -1.7068 -8.5743 -6.4204 22 1 -2.7825 -9.6873 -4.5537 23 1 -3.0120 -7.2892 -4.8313 24 6 1.5237 -5.5239 -2.4894 25 8 2.0117 -0.6802 -1.1665 26 1 -0.3633 0.5303 0.8803 27 1 -0.3633 0.4973 -0.8994 28 1 -0.3633 -1.0274 0.0191 29 1 3.1339 1.4381 0.0190 30 1 1.6977 1.9503 -0.8994 31 1 1.6667 1.9613 0.8803 32 1 1.3456 -2.6254 0.7159 33 1 3.0242 -2.5188 1.3432 34 1 3.8016 -4.2316 -0.5992 35 1 4.8086 -6.1233 -1.9606 36 1 4.2655 -8.1424 -3.2542 37 1 1.9803 -8.5111 -4.0727 38 1 -0.2418 -10.1067 -3.6326 39 1 0.7592 -4.7924 -2.2727 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181745357.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:47 Heat of formation + Delta-G solvation = -123.340742 kcal Electronic energy + Delta-G solvation = -23081.729034 eV Core-core repulsion = 19567.391523 eV Total energy + Delta-G solvation = -3514.337511 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.15589 -40.81584 -38.93951 -36.39847 -36.04207 -34.96523 -34.06310 -31.77818 -30.96138 -29.18343 -28.40996 -27.27666 -25.52071 -23.32418 -22.72879 -22.25071 -21.30111 -19.67017 -18.85171 -18.37328 -17.40628 -17.35045 -16.96972 -16.51349 -16.31839 -16.09558 -15.59429 -15.08774 -14.78609 -14.71067 -14.53451 -14.23021 -13.97469 -13.66634 -13.55372 -13.25584 -13.12104 -13.05738 -12.97897 -12.86091 -12.78642 -12.69629 -12.20205 -12.01783 -11.59641 -11.47016 -11.19696 -10.98155 -10.88820 -10.56055 -9.42170 -8.80562 -8.63909 -6.39774 0.77794 0.96877 1.34735 1.44658 1.47827 1.56461 1.73253 2.19420 2.44521 2.70713 2.86271 3.30122 3.45795 3.69856 3.71444 3.84658 3.91910 4.22352 4.39879 4.45123 4.56829 4.59320 4.62382 4.67621 4.71509 4.84608 4.98441 5.06730 5.08159 5.08746 5.18473 5.20750 5.30191 5.70622 5.81454 5.93376 6.05761 6.08042 6.30966 6.53505 6.65810 6.90878 6.97931 7.19368 8.30924 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.021071 B = 0.003891 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.505412 B = 7194.443158 C = 8127.772505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.236 3.764 3 C -0.147 4.147 4 O -0.368 6.368 5 C 0.032 3.968 6 C 0.044 3.956 7 H 0.151 0.849 8 C 0.502 3.498 9 O -0.552 6.552 10 N -0.646 5.646 11 C 0.157 3.843 12 C -0.245 4.245 13 C -0.091 4.091 14 C -0.196 4.196 15 C 0.089 3.911 16 C -0.505 4.505 17 H 0.060 0.940 18 C 0.040 3.960 19 N -0.820 5.820 20 Si 0.980 3.020 21 H -0.260 1.260 22 H -0.260 1.260 23 H -0.266 1.266 24 C -0.238 4.238 25 O -0.378 6.378 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.162 0.838 34 H 0.426 0.574 35 H 0.138 0.862 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.290 0.710 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.621 13.014 10.012 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.160 3.840 3 C -0.204 4.204 4 O -0.289 6.289 5 C -0.045 4.045 6 C -0.017 4.017 7 H 0.169 0.831 8 C 0.289 3.711 9 O -0.428 6.428 10 N -0.294 5.294 11 C 0.064 3.936 12 C -0.266 4.266 13 C -0.109 4.109 14 C -0.216 4.216 15 C 0.086 3.914 16 C -0.535 4.535 17 H 0.078 0.922 18 C -0.175 4.175 19 N -0.446 5.446 20 Si 0.801 3.199 21 H -0.184 1.184 22 H -0.184 1.184 23 H -0.191 1.191 24 C -0.260 4.260 25 O -0.298 6.298 26 H 0.116 0.884 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.179 0.821 34 H 0.265 0.735 35 H 0.155 0.845 36 H 0.143 0.857 37 H 0.123 0.877 38 H 0.101 0.899 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.036 13.047 9.419 17.187 hybrid contribution -0.770 -0.537 -0.412 1.025 sum 5.267 12.510 9.007 16.290 Atomic orbital electron populations 1.22422 0.93692 1.02682 1.04340 1.23833 0.93573 0.92638 0.73957 1.22063 1.02782 0.91221 1.04362 1.89244 1.85922 1.21698 1.32008 1.24451 1.02854 0.85219 0.91932 1.23743 1.00027 0.84693 0.93242 0.83145 1.21022 0.80395 0.84586 0.85130 1.90785 1.36673 1.84483 1.30815 1.43167 1.42804 1.06331 1.37143 1.17469 0.92793 0.87131 0.96213 1.20500 0.97999 0.97448 1.10650 1.20867 0.95776 0.96927 0.97376 1.21333 0.92790 1.01529 1.05981 1.17814 0.93843 0.90987 0.88720 1.19742 0.98493 0.93553 1.41668 0.92179 1.26651 1.01708 0.94650 0.94489 1.69842 1.39705 1.00479 1.34573 0.85247 0.77084 0.78720 0.78896 1.18439 1.18394 1.19071 1.20924 0.95220 1.01210 1.08640 1.89021 1.69869 1.40280 1.30662 0.88374 0.90536 0.93767 0.90788 0.89983 0.88790 0.91557 0.82055 0.73531 0.84466 0.85665 0.87749 0.89923 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 9.20 71.98 0.66 -3.28 16 2 C 0.24 5.46 1.47 30.59 0.04 5.50 16 3 C -0.15 -2.46 9.24 71.98 0.66 -1.79 16 4 O -0.37 -7.98 11.01 -126.22 -1.39 -9.37 16 5 C 0.03 0.64 7.34 72.64 0.53 1.17 16 6 C 0.04 1.08 4.12 30.50 0.13 1.21 16 7 H 0.15 2.52 8.14 -2.39 -0.02 2.50 16 8 C 0.50 17.68 6.93 87.66 0.61 18.29 16 9 O -0.55 -26.62 14.32 15.15 0.22 -26.41 16 10 N -0.65 -20.84 5.33 -303.66 -1.62 -22.46 16 11 C 0.16 6.86 6.25 38.10 0.24 7.10 16 12 C -0.25 -9.88 9.97 22.58 0.23 -9.66 16 13 C -0.09 -4.05 10.02 22.20 0.22 -3.83 16 14 C -0.20 -10.51 8.69 22.75 0.20 -10.32 16 15 C 0.09 5.14 5.57 -21.31 -0.12 5.03 16 16 C -0.50 -29.59 9.05 23.46 0.21 -29.38 16 17 H 0.06 3.57 7.90 -2.91 -0.02 3.55 16 18 C 0.04 2.12 5.16 85.25 0.44 2.56 16 19 N -0.82 -43.69 10.94 21.82 0.24 -43.45 16 20 Si 0.98 40.35 29.59 68.60 2.03 42.38 16 21 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 22 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 24 C -0.24 -12.86 8.39 22.85 0.19 -12.67 16 25 O -0.38 -11.25 10.14 -119.55 -1.21 -12.46 16 26 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.58 8.04 -2.38 -0.02 1.56 16 33 H 0.16 1.78 8.14 -2.39 -0.02 1.77 16 34 H 0.43 8.92 8.82 -92.71 -0.82 8.10 16 35 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 36 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 37 H 0.10 5.80 6.17 -2.91 -0.02 5.78 16 38 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 39 H 0.08 4.61 6.48 -2.91 -0.02 4.59 16 Total: -1.00 -75.72 330.98 2.77 -72.96 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.25 Total: 28.87 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 4.25 Total: -30.06 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: -1.38 Total: -65.91 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: -2.38 Total: -48.23 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -75.72 2.77 -72.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181745357.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.384 kcal (2) G-P(sol) polarization free energy of solvation -75.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds