Wall clock time and date at job start Tue Mar 31 2020 06:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47288 * 2 1 4 4 C 1.52996 * 109.47336 * 120.00397 * 2 1 3 5 5 C 1.52996 * 109.47064 * 67.76176 * 4 2 1 6 6 N 1.46501 * 109.54752 * 293.20269 * 5 4 2 7 7 S 1.65596 * 119.99866 * 283.76917 * 6 5 4 8 8 O 1.42096 * 106.40399 * 307.81522 * 7 6 5 9 9 O 1.42108 * 106.39982 * 174.89773 * 7 6 5 10 10 C 1.76203 * 107.21676 * 61.36090 * 7 6 5 11 11 H 1.07996 * 120.00221 * 12.36704 * 10 7 6 12 12 C 1.37879 * 119.99742 * 192.36586 * 10 7 6 13 13 N 1.31513 * 119.99808 * 179.97438 * 12 10 7 14 14 Si 1.86806 * 120.00088 * 359.97438 * 12 10 7 15 15 H 1.48504 * 109.46902 * 89.99736 * 14 12 10 16 16 H 1.48499 * 109.47040 * 209.99747 * 14 12 10 17 17 H 1.48495 * 109.47041 * 330.00221 * 14 12 10 18 18 C 1.53184 * 109.61703 * 53.42656 * 5 4 2 19 19 C 1.53095 * 109.16262 * 176.88812 * 18 5 4 20 20 O 1.42906 * 109.41539 * 302.38847 * 19 18 5 21 21 C 1.42900 * 114.09332 * 61.16257 * 20 19 18 22 22 C 1.53093 * 109.41612 * 298.83865 * 21 20 19 23 23 H 1.09005 * 109.46964 * 61.21251 * 1 2 3 24 24 H 1.08995 * 109.47523 * 181.21741 * 1 2 3 25 25 H 1.09000 * 109.46687 * 301.21900 * 1 2 3 26 26 H 1.09007 * 109.46536 * 240.00404 * 2 1 3 27 27 H 1.09001 * 109.47203 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46864 * 300.00130 * 3 2 1 29 29 H 1.08995 * 109.47093 * 59.99974 * 3 2 1 30 30 H 1.08999 * 109.46669 * 307.76425 * 4 2 1 31 31 H 1.08999 * 109.47454 * 187.76801 * 4 2 1 32 32 H 0.97004 * 120.00054 * 103.76856 * 6 5 4 33 33 H 0.97002 * 119.99857 * 180.02562 * 13 12 10 34 34 H 1.08992 * 109.52041 * 296.79643 * 18 5 4 35 35 H 1.08999 * 109.52029 * 56.98447 * 18 5 4 36 36 H 1.09001 * 109.47423 * 182.40704 * 19 18 5 37 37 H 1.08994 * 109.48688 * 62.38057 * 19 18 5 38 38 H 1.08999 * 109.47827 * 178.85849 * 21 20 19 39 39 H 1.08998 * 109.49649 * 58.82970 * 21 20 19 40 40 H 1.09003 * 109.52342 * 297.70541 * 22 21 20 41 41 H 1.08997 * 109.57457 * 177.54766 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6954 -2.2090 1.1554 6 7 0.2420 -2.3805 1.2218 7 16 -0.5423 -2.2444 2.6739 8 8 0.1288 -3.1137 3.5756 9 8 -1.9314 -2.3407 2.3902 10 6 -0.2673 -0.6069 3.2637 11 1 0.1491 0.1413 2.6055 12 6 -0.5836 -0.2808 4.5655 13 7 -0.3779 0.9412 5.0058 14 14 -1.3045 -1.5749 5.7037 15 1 -0.2051 -2.2808 6.4098 16 1 -2.1917 -0.9202 6.6985 17 1 -2.0894 -2.5523 4.9078 18 6 2.2183 -2.7757 -0.1682 19 6 1.9370 -4.2798 -0.2170 20 8 2.5513 -4.9146 0.9063 21 6 2.0672 -4.4585 2.1711 22 6 2.3537 -2.9616 2.3159 23 1 -0.3633 0.4949 -0.9007 24 1 -0.3634 -1.0274 0.0218 25 1 -0.3633 0.5327 0.8789 26 1 1.8933 -0.5138 -0.8901 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.5678 -0.2939 2.1337 31 1 3.1212 -0.6026 1.3213 32 1 -0.2609 -2.5739 0.4152 33 1 -0.6001 1.1705 5.9218 34 1 1.7139 -2.2836 -0.9996 35 1 3.2923 -2.6035 -0.2391 36 1 2.3451 -4.6961 -1.1380 37 1 0.8607 -4.4495 -0.1868 38 1 2.5690 -5.0036 2.9705 39 1 0.9926 -4.6305 2.2328 40 1 3.4305 -2.7931 2.2951 41 1 1.9469 -2.6016 3.2608 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193001928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:06 Heat of formation + Delta-G solvation = -121.935895 kcal Electronic energy + Delta-G solvation = -24515.054043 eV Core-core repulsion = 21136.221402 eV Total energy + Delta-G solvation = -3378.832641 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.87877 -36.80258 -35.78866 -34.51602 -33.71268 -33.04301 -30.79874 -30.45999 -27.38963 -26.68245 -26.20623 -23.46634 -22.66944 -19.90276 -19.67038 -18.64066 -17.52071 -16.92798 -16.14624 -15.67608 -15.49452 -15.06519 -14.46551 -14.20493 -13.97635 -13.51517 -13.38543 -13.34411 -12.91656 -12.86237 -12.61887 -12.02784 -11.81442 -11.58918 -11.44564 -11.42087 -11.19764 -11.07654 -10.85988 -10.81710 -10.59002 -10.55478 -10.40182 -10.09468 -10.03931 -9.74178 -9.44578 -9.26623 -9.25187 -8.89595 -8.35654 -6.83466 -5.37865 2.05645 3.07756 3.13857 3.25046 3.91819 4.22236 4.25915 4.54675 4.86376 5.06343 5.15497 5.26298 5.36152 5.43000 5.46066 5.53598 5.67260 5.69332 5.85511 5.97637 6.01759 6.05519 6.09349 6.16946 6.17654 6.26938 6.30147 6.35587 6.40964 6.49200 6.56141 6.70773 6.74929 6.88090 6.92897 7.05813 7.44721 7.58049 7.70883 8.21623 8.66637 10.26405 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.009630 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.689745 B = 2907.002181 C = 3862.539090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.087 4.087 3 C -0.147 4.147 4 C -0.157 4.157 5 C 0.198 3.802 6 N -1.113 6.113 7 S 2.672 3.328 8 O -1.009 7.009 9 O -1.013 7.013 10 C -1.018 5.018 11 H 0.141 0.859 12 C 0.152 3.848 13 N -0.819 5.819 14 Si 0.832 3.168 15 H -0.245 1.245 16 H -0.267 1.267 17 H -0.247 1.247 18 C -0.153 4.153 19 C 0.062 3.938 20 O -0.394 6.394 21 C 0.071 3.929 22 C -0.181 4.181 23 H 0.038 0.962 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.116 0.884 31 H 0.063 0.937 32 H 0.404 0.596 33 H 0.280 0.720 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.794 -3.617 -8.975 11.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.105 4.105 3 C -0.205 4.205 4 C -0.195 4.195 5 C 0.109 3.891 6 N -0.871 5.871 7 S 2.775 3.225 8 O -0.999 6.999 9 O -1.003 7.003 10 C -1.152 5.152 11 H 0.159 0.841 12 C -0.067 4.067 13 N -0.448 5.448 14 Si 0.655 3.345 15 H -0.169 1.169 16 H -0.192 1.192 17 H -0.171 1.171 18 C -0.192 4.192 19 C -0.015 4.015 20 O -0.313 6.313 21 C -0.005 4.005 22 C -0.220 4.220 23 H 0.058 0.942 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.134 0.866 31 H 0.082 0.918 32 H 0.239 0.761 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.546 -4.292 -8.293 10.860 hybrid contribution -0.462 0.508 0.198 0.715 sum 5.083 -3.784 -8.095 10.280 Atomic orbital electron populations 1.22434 0.95203 1.03515 1.01873 1.21034 0.96363 0.95389 0.97746 1.21853 1.00137 0.96788 1.01691 1.22643 1.01241 0.94184 1.01411 1.19926 0.79357 0.94706 0.95132 1.55851 1.14999 1.89424 1.26809 1.01399 0.72248 0.77269 0.71608 1.93334 1.74890 1.68587 1.63090 1.93455 1.33006 1.89482 1.84364 1.30725 1.58041 1.19002 1.07433 0.84141 1.24452 0.90334 0.95302 0.96646 1.69986 1.38994 1.18190 1.17606 0.87409 0.81411 0.81839 0.83862 1.16913 1.19193 1.17073 1.22512 1.02281 0.96565 0.97856 1.22494 0.97470 0.92109 0.89450 1.87843 1.65105 1.63754 1.14596 1.22554 0.99877 0.93991 0.84060 1.22975 1.01265 0.96500 1.01222 0.94249 0.91016 0.90871 0.91973 0.93387 0.93460 0.92177 0.86648 0.91797 0.76072 0.90922 0.90199 0.90228 0.89641 0.93346 0.89258 0.92054 0.90925 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 8.36 37.16 0.31 -2.46 16 2 C -0.09 -1.26 2.61 -90.62 -0.24 -1.49 16 3 C -0.15 -2.04 9.19 37.16 0.34 -1.70 16 4 C -0.16 -2.52 3.87 -26.74 -0.10 -2.63 16 5 C 0.20 3.15 0.46 -131.63 -0.06 3.09 16 6 N -1.11 -19.71 2.20 0.69 0.00 -19.71 16 7 S 2.67 62.13 3.83 -107.50 -0.41 61.72 16 8 O -1.01 -24.18 10.25 -57.17 -0.59 -24.77 16 9 O -1.01 -26.53 17.33 -57.17 -0.99 -27.52 16 10 C -1.02 -25.78 8.41 30.60 0.26 -25.53 16 11 H 0.14 3.48 3.83 -52.49 -0.20 3.28 16 12 C 0.15 4.09 5.47 -17.82 -0.10 3.99 16 13 N -0.82 -22.19 13.96 55.43 0.77 -21.42 16 14 Si 0.83 20.69 26.05 -169.99 -4.43 16.26 16 15 H -0.25 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.25 -6.37 6.27 56.52 0.35 -6.02 16 18 C -0.15 -1.97 4.31 -26.59 -0.11 -2.08 16 19 C 0.06 0.82 6.68 37.21 0.25 1.07 16 20 O -0.39 -6.29 10.77 -35.23 -0.38 -6.67 16 21 C 0.07 1.22 6.08 37.21 0.23 1.45 16 22 C -0.18 -3.12 4.35 -26.59 -0.12 -3.24 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.07 1.13 4.28 -51.93 -0.22 0.91 16 25 H 0.07 1.38 6.12 -51.93 -0.32 1.07 16 26 H 0.06 0.78 5.97 -51.93 -0.31 0.47 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.12 2.26 4.10 -51.93 -0.21 2.04 16 31 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 32 H 0.40 6.22 6.72 -34.47 -0.23 5.99 16 33 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.08 0.90 6.38 -51.93 -0.33 0.57 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.64 7.48 -51.93 -0.39 0.25 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.06 1.14 6.21 -51.93 -0.32 0.82 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.12 2.38 5.51 -51.93 -0.29 2.09 16 LS Contribution 302.82 15.07 4.56 4.56 Total: -1.00 -29.44 302.82 -6.61 -36.05 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -5.81 Total: 11.02 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 0.66 Total: -29.53 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.78 Total: -41.12 kcal Atomic # 8 Polarization: -57.01 SS G_CDS: -1.96 Total: -58.96 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.43 Total: 16.26 kcal Atomic # 16 Polarization: 62.13 SS G_CDS: -0.41 Total: 61.72 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.44 -6.61 -36.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193001928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.885 kcal (2) G-P(sol) polarization free energy of solvation -29.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds