Wall clock time and date at job start Tue Mar 31 2020 06:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47288 * 2 1 4 4 C 1.52996 * 109.47336 * 120.00397 * 2 1 3 5 5 C 1.52996 * 109.47064 * 67.76176 * 4 2 1 6 6 N 1.46501 * 109.54752 * 293.20269 * 5 4 2 7 7 S 1.65596 * 119.99866 * 283.76917 * 6 5 4 8 8 O 1.42096 * 106.40399 * 307.81522 * 7 6 5 9 9 O 1.42108 * 106.39982 * 174.89773 * 7 6 5 10 10 C 1.76203 * 107.21676 * 61.36090 * 7 6 5 11 11 H 1.07996 * 120.00221 * 12.36704 * 10 7 6 12 12 C 1.37879 * 119.99742 * 192.36586 * 10 7 6 13 13 N 1.31513 * 119.99808 * 179.97438 * 12 10 7 14 14 Si 1.86806 * 120.00088 * 359.97438 * 12 10 7 15 15 H 1.48504 * 109.46902 * 89.99736 * 14 12 10 16 16 H 1.48499 * 109.47040 * 209.99747 * 14 12 10 17 17 H 1.48495 * 109.47041 * 330.00221 * 14 12 10 18 18 C 1.53184 * 109.61703 * 53.42656 * 5 4 2 19 19 C 1.53095 * 109.16262 * 176.88812 * 18 5 4 20 20 O 1.42906 * 109.41539 * 302.38847 * 19 18 5 21 21 C 1.42900 * 114.09332 * 61.16257 * 20 19 18 22 22 C 1.53093 * 109.41612 * 298.83865 * 21 20 19 23 23 H 1.09005 * 109.46964 * 61.21251 * 1 2 3 24 24 H 1.08995 * 109.47523 * 181.21741 * 1 2 3 25 25 H 1.09000 * 109.46687 * 301.21900 * 1 2 3 26 26 H 1.09007 * 109.46536 * 240.00404 * 2 1 3 27 27 H 1.09001 * 109.47203 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46864 * 300.00130 * 3 2 1 29 29 H 1.08995 * 109.47093 * 59.99974 * 3 2 1 30 30 H 1.08999 * 109.46669 * 307.76425 * 4 2 1 31 31 H 1.08999 * 109.47454 * 187.76801 * 4 2 1 32 32 H 0.97004 * 120.00054 * 103.76856 * 6 5 4 33 33 H 0.97002 * 119.99857 * 180.02562 * 13 12 10 34 34 H 1.08992 * 109.52041 * 296.79643 * 18 5 4 35 35 H 1.08999 * 109.52029 * 56.98447 * 18 5 4 36 36 H 1.09001 * 109.47423 * 182.40704 * 19 18 5 37 37 H 1.08994 * 109.48688 * 62.38057 * 19 18 5 38 38 H 1.08999 * 109.47827 * 178.85849 * 21 20 19 39 39 H 1.08998 * 109.49649 * 58.82970 * 21 20 19 40 40 H 1.09003 * 109.52342 * 297.70541 * 22 21 20 41 41 H 1.08997 * 109.57457 * 177.54766 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6954 -2.2090 1.1554 6 7 0.2420 -2.3805 1.2218 7 16 -0.5423 -2.2444 2.6739 8 8 0.1288 -3.1137 3.5756 9 8 -1.9314 -2.3407 2.3902 10 6 -0.2673 -0.6069 3.2637 11 1 0.1491 0.1413 2.6055 12 6 -0.5836 -0.2808 4.5655 13 7 -0.3779 0.9412 5.0058 14 14 -1.3045 -1.5749 5.7037 15 1 -0.2051 -2.2808 6.4098 16 1 -2.1917 -0.9202 6.6985 17 1 -2.0894 -2.5523 4.9078 18 6 2.2183 -2.7757 -0.1682 19 6 1.9370 -4.2798 -0.2170 20 8 2.5513 -4.9146 0.9063 21 6 2.0672 -4.4585 2.1711 22 6 2.3537 -2.9616 2.3159 23 1 -0.3633 0.4949 -0.9007 24 1 -0.3634 -1.0274 0.0218 25 1 -0.3633 0.5327 0.8789 26 1 1.8933 -0.5138 -0.8901 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.5678 -0.2939 2.1337 31 1 3.1212 -0.6026 1.3213 32 1 -0.2609 -2.5739 0.4152 33 1 -0.6001 1.1705 5.9218 34 1 1.7139 -2.2836 -0.9996 35 1 3.2923 -2.6035 -0.2391 36 1 2.3451 -4.6961 -1.1380 37 1 0.8607 -4.4495 -0.1868 38 1 2.5690 -5.0036 2.9705 39 1 0.9926 -4.6305 2.2328 40 1 3.4305 -2.7931 2.2951 41 1 1.9469 -2.6016 3.2608 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193001928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:05 Heat of formation + Delta-G solvation = -143.797542 kcal Electronic energy + Delta-G solvation = -24516.002035 eV Core-core repulsion = 21136.221402 eV Total energy + Delta-G solvation = -3379.780633 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.13762 -38.03663 -37.69828 -36.46545 -35.24796 -34.81902 -31.95096 -31.88358 -28.90095 -28.16708 -27.65665 -24.66772 -23.89479 -21.33238 -21.12259 -20.19558 -19.33751 -18.66870 -17.62238 -16.98359 -16.86559 -16.65035 -16.07096 -15.66421 -15.46783 -15.04117 -14.92021 -14.79735 -14.54919 -14.12906 -13.98464 -13.48190 -13.40712 -13.23450 -12.98455 -12.85556 -12.67174 -12.60012 -12.42376 -12.29845 -12.04987 -11.96126 -11.90743 -11.68760 -11.40058 -11.29565 -11.09105 -10.90775 -10.65057 -10.50214 -9.76899 -8.88002 -7.39596 0.23276 1.07820 1.12745 1.23191 1.90492 2.48486 2.60736 3.08168 3.36677 3.67522 3.88411 3.97107 4.19375 4.22334 4.26523 4.28663 4.41089 4.46769 4.51955 4.69705 4.84305 4.88445 4.91898 4.94920 4.98250 5.04334 5.07408 5.19672 5.23301 5.25991 5.30971 5.39621 5.45076 5.50016 5.59091 5.60632 5.75444 6.26530 6.34921 6.38430 6.64446 8.26327 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.009630 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.689745 B = 2907.002181 C = 3862.539090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.082 4.082 3 C -0.146 4.146 4 C -0.157 4.157 5 C 0.194 3.806 6 N -1.097 6.097 7 S 2.688 3.312 8 O -1.018 7.018 9 O -1.046 7.046 10 C -1.025 5.025 11 H 0.140 0.860 12 C 0.116 3.884 13 N -0.848 5.848 14 Si 0.847 3.153 15 H -0.239 1.239 16 H -0.241 1.241 17 H -0.263 1.263 18 C -0.144 4.144 19 C 0.051 3.949 20 O -0.399 6.399 21 C 0.074 3.926 22 C -0.185 4.185 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.034 0.966 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.418 0.582 33 H 0.287 0.713 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.119 0.881 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.041 0.959 40 H 0.092 0.908 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.213 -4.272 -11.298 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.100 4.100 3 C -0.204 4.204 4 C -0.195 4.195 5 C 0.106 3.894 6 N -0.859 5.859 7 S 2.789 3.211 8 O -1.008 7.008 9 O -1.036 7.036 10 C -1.158 5.158 11 H 0.157 0.843 12 C -0.100 4.100 13 N -0.478 5.478 14 Si 0.668 3.332 15 H -0.162 1.162 16 H -0.165 1.165 17 H -0.187 1.187 18 C -0.183 4.183 19 C -0.025 4.025 20 O -0.319 6.319 21 C -0.003 4.003 22 C -0.224 4.224 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.114 0.886 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.256 0.744 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.136 0.864 37 H 0.064 0.936 38 H 0.110 0.890 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.952 -4.929 -10.602 13.603 hybrid contribution -0.850 0.703 0.829 1.380 sum 6.102 -4.226 -9.773 12.272 Atomic orbital electron populations 1.22435 0.96723 1.03103 1.01010 1.21052 0.94972 0.95932 0.98065 1.21842 1.01216 0.96240 1.01062 1.22579 1.02078 0.94172 1.00688 1.20152 0.77693 0.94750 0.96829 1.55397 1.16032 1.88996 1.25489 1.00736 0.71565 0.76174 0.72616 1.93336 1.74840 1.68205 1.64381 1.93403 1.35424 1.89560 1.85242 1.31181 1.56711 1.20735 1.07197 0.84268 1.24989 0.90918 0.96214 0.97907 1.70007 1.40492 1.18914 1.18432 0.87187 0.81587 0.80774 0.83648 1.16240 1.16506 1.18748 1.22508 1.03503 0.96171 0.96089 1.22808 0.97655 0.92452 0.89619 1.87841 1.65247 1.64183 1.14582 1.22420 0.98688 0.93968 0.85231 1.22956 1.02460 0.96732 1.00221 0.92276 0.91016 0.94693 0.88599 0.91675 0.91869 0.95063 0.90593 0.89964 0.74421 0.90205 0.87754 0.88304 0.86354 0.93586 0.88977 0.94094 0.88944 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.37 8.36 71.98 0.60 -4.77 16 2 C -0.08 -2.15 2.61 -10.79 -0.03 -2.18 16 3 C -0.15 -3.73 9.19 71.98 0.66 -3.07 16 4 C -0.16 -4.79 3.87 30.59 0.12 -4.67 16 5 C 0.19 5.76 0.46 3.72 0.00 5.76 16 6 N -1.10 -37.72 2.20 -151.74 -0.33 -38.05 16 7 S 2.69 126.55 3.83 -56.49 -0.22 126.34 16 8 O -1.02 -49.56 10.25 -128.00 -1.31 -50.87 16 9 O -1.05 -55.62 17.33 -128.00 -2.22 -57.84 16 10 C -1.03 -53.38 8.41 67.73 0.57 -52.81 16 11 H 0.14 7.18 3.83 -2.91 -0.01 7.17 16 12 C 0.12 6.39 5.47 84.66 0.46 6.86 16 13 N -0.85 -47.02 13.96 21.45 0.30 -46.72 16 14 Si 0.85 42.22 26.05 68.60 1.79 44.01 16 15 H -0.24 -11.55 7.11 99.48 0.71 -10.84 16 16 H -0.24 -10.93 7.11 99.48 0.71 -10.22 16 17 H -0.26 -13.76 6.27 99.48 0.62 -13.14 16 18 C -0.14 -3.05 4.31 30.69 0.13 -2.92 16 19 C 0.05 1.15 6.68 72.01 0.48 1.63 16 20 O -0.40 -11.66 10.77 -148.98 -1.60 -13.27 16 21 C 0.07 2.43 6.08 72.01 0.44 2.87 16 22 C -0.18 -6.17 4.35 30.68 0.13 -6.03 16 23 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 24 H 0.07 2.14 4.28 -2.39 -0.01 2.13 16 25 H 0.03 1.33 6.12 -2.39 -0.01 1.32 16 26 H 0.10 1.92 5.97 -2.38 -0.01 1.90 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.03 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.08 3.00 4.10 -2.39 -0.01 2.99 16 31 H 0.08 2.19 8.13 -2.39 -0.02 2.17 16 32 H 0.42 12.13 6.72 -96.74 -0.65 11.48 16 33 H 0.29 14.60 8.31 -92.71 -0.77 13.83 16 34 H 0.10 1.75 6.38 -2.39 -0.02 1.74 16 35 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.05 1.07 7.48 -2.39 -0.02 1.05 16 38 H 0.09 2.91 8.14 -2.39 -0.02 2.90 16 39 H 0.04 1.51 6.21 -2.39 -0.01 1.49 16 40 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.09 3.47 5.51 -2.39 -0.01 3.45 16 Total: -1.00 -64.96 302.82 0.29 -64.67 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.32 Total: 31.05 kcal Atomic # 6 Polarization: -62.89 SS G_CDS: 3.57 Total: -59.32 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -0.04 Total: -84.77 kcal Atomic # 8 Polarization: -116.84 SS G_CDS: -5.13 Total: -121.97 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.79 Total: 44.01 kcal Atomic # 16 Polarization: 126.55 SS G_CDS: -0.22 Total: 126.34 kcal Total: -64.96 0.29 -64.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193001928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.130 kcal (2) G-P(sol) polarization free energy of solvation -64.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds