Wall clock time and date at job start Tue Mar 31 2020 06:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47128 * 2 1 4 4 C 1.52993 * 109.47337 * 119.99977 * 2 1 3 5 5 C 1.52999 * 109.47373 * 186.75933 * 4 2 1 6 6 C 1.53174 * 109.54273 * 293.30197 * 5 4 2 7 7 C 1.53095 * 109.16077 * 183.15072 * 6 5 4 8 8 O 1.42905 * 109.41769 * 57.60964 * 7 6 5 9 9 C 1.42908 * 114.09485 * 298.84011 * 8 7 6 10 10 C 1.53090 * 109.41203 * 61.15811 * 9 8 7 11 11 N 1.46500 * 109.46961 * 240.00273 * 2 1 3 12 12 S 1.65602 * 120.00353 * 68.54162 * 11 2 1 13 13 O 1.42091 * 106.40453 * 178.53865 * 12 11 2 14 14 O 1.42104 * 106.39687 * 311.45768 * 12 11 2 15 15 C 1.76202 * 107.22012 * 64.99704 * 12 11 2 16 16 H 1.08005 * 119.99666 * 0.02562 * 15 12 11 17 17 C 1.37873 * 120.00112 * 180.02562 * 15 12 11 18 18 N 1.31518 * 120.00048 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 119.99864 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47043 * 90.00237 * 19 17 15 21 21 H 1.48497 * 109.47058 * 209.99565 * 19 17 15 22 22 H 1.48498 * 109.47598 * 330.00154 * 19 17 15 23 23 H 1.09002 * 109.46680 * 299.99814 * 1 2 3 24 24 H 1.08997 * 109.47285 * 59.99759 * 1 2 3 25 25 H 1.08996 * 109.46895 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47048 * 187.62302 * 3 2 1 27 27 H 1.09007 * 109.46874 * 307.62117 * 3 2 1 28 28 H 1.09001 * 109.46812 * 67.61861 * 3 2 1 29 29 H 1.09003 * 109.47127 * 66.76003 * 4 2 1 30 30 H 1.09005 * 109.47612 * 306.76441 * 4 2 1 31 31 H 1.09000 * 109.54076 * 53.56846 * 5 4 2 32 32 H 1.09001 * 109.52243 * 303.05162 * 6 5 4 33 33 H 1.08995 * 109.52819 * 63.24913 * 6 5 4 34 34 H 1.09004 * 109.48167 * 297.62578 * 7 6 5 35 35 H 1.09001 * 109.47984 * 177.59004 * 7 6 5 36 36 H 1.08999 * 109.48120 * 301.18064 * 9 8 7 37 37 H 1.09003 * 109.49104 * 181.14606 * 9 8 7 38 38 H 1.09006 * 109.52009 * 182.48364 * 10 9 8 39 39 H 1.09001 * 109.52519 * 62.29891 * 10 9 8 40 40 H 0.96998 * 120.00074 * 248.53893 * 11 2 1 41 41 H 0.96998 * 120.00179 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5606 -0.5758 1.3370 6 6 4.2157 -1.3366 0.1801 7 6 5.7378 -1.2514 0.3207 8 8 6.1283 -1.7834 1.5882 9 6 5.5838 -1.0822 2.7081 10 6 4.0556 -1.1606 2.6634 11 7 2.0183 -0.6906 -1.1962 12 16 1.7997 -0.0124 -2.6911 13 8 2.4055 -0.8956 -3.6249 14 8 0.4341 0.3744 -2.7603 15 6 2.7412 1.4764 -2.7313 16 1 3.3143 1.7764 -1.8663 17 6 2.7464 2.2584 -3.8668 18 7 2.0482 1.8933 -4.9198 19 14 3.7440 3.8371 -3.9090 20 1 5.1129 3.5445 -4.4048 21 1 3.0876 4.8133 -4.8152 22 1 3.8248 4.4085 -2.5407 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1214 1.4456 -0.1363 27 1 1.5697 1.9942 -0.8140 28 1 1.7922 1.9155 0.9503 29 1 1.7789 -1.7779 1.1908 30 1 1.5813 -0.2821 2.1351 31 1 3.8299 0.4788 1.2804 32 1 3.9052 -2.3811 0.2088 33 1 3.9120 -0.8912 -0.7672 34 1 6.0515 -0.2098 0.2513 35 1 6.2092 -1.8271 -0.4759 36 1 5.8955 -0.0384 2.6699 37 1 5.9443 -1.5357 3.6314 38 1 3.6372 -0.5893 3.4921 39 1 3.7418 -2.2015 2.7423 40 1 2.4697 -1.5450 -1.1127 41 1 2.0515 2.4437 -5.7186 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193005005.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:09 Heat of formation + Delta-G solvation = -144.130433 kcal Electronic energy + Delta-G solvation = -23659.327601 eV Core-core repulsion = 20279.532532 eV Total energy + Delta-G solvation = -3379.795068 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.73110 -37.57040 -35.20025 -33.93428 -33.49058 -33.11759 -31.13536 -30.04230 -27.59676 -27.19858 -25.60473 -23.49911 -23.01379 -20.11675 -19.56030 -18.74242 -17.35150 -16.43609 -16.00558 -15.85936 -15.45030 -15.00069 -14.70640 -14.18995 -14.08469 -13.93049 -13.41452 -13.30867 -12.76926 -12.52358 -12.21221 -12.04043 -11.89570 -11.75909 -11.42282 -11.24951 -11.21558 -11.15448 -10.90341 -10.71405 -10.58114 -10.55117 -10.34393 -10.24687 -10.09776 -10.03889 -9.64737 -9.34335 -9.21102 -8.80294 -8.40513 -6.69339 -5.28202 2.38574 3.05492 3.13306 3.18223 3.96006 4.05891 4.60476 4.65561 4.75872 4.84307 4.93647 5.10982 5.21847 5.37151 5.46019 5.49532 5.55791 5.63635 5.72796 5.82108 5.83432 5.87662 5.98483 6.05473 6.07454 6.10431 6.17630 6.23042 6.37222 6.41086 6.46947 6.53850 6.62246 6.85648 6.99383 7.17573 7.27438 7.35194 7.94098 8.01407 8.90397 10.24976 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017300 B = 0.006607 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.087971 B = 4237.199425 C = 4849.663997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.189 3.811 3 C -0.183 4.183 4 C -0.108 4.108 5 C -0.091 4.091 6 C -0.175 4.175 7 C 0.059 3.941 8 O -0.389 6.389 9 C 0.061 3.939 10 C -0.151 4.151 11 N -1.131 6.131 12 S 2.712 3.288 13 O -1.013 7.013 14 O -1.005 7.005 15 C -1.021 5.021 16 H 0.111 0.889 17 C 0.134 3.866 18 N -0.846 5.846 19 Si 0.915 3.085 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.262 1.262 23 H 0.053 0.947 24 H 0.099 0.901 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.404 0.596 41 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.564 -2.394 14.210 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.100 3.900 3 C -0.241 4.241 4 C -0.147 4.147 5 C -0.109 4.109 6 C -0.213 4.213 7 C -0.018 4.018 8 O -0.308 6.308 9 C -0.016 4.016 10 C -0.188 4.188 11 N -0.889 5.889 12 S 2.812 3.188 13 O -1.003 7.003 14 O -0.995 6.995 15 C -1.154 5.154 16 H 0.130 0.870 17 C -0.084 4.084 18 N -0.476 5.476 19 Si 0.740 3.260 20 H -0.193 1.193 21 H -0.201 1.201 22 H -0.186 1.186 23 H 0.072 0.928 24 H 0.118 0.882 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.238 0.762 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.955 -2.748 13.341 13.938 hybrid contribution 0.892 1.098 0.232 1.434 sum 3.846 -1.650 13.573 14.204 Atomic orbital electron populations 1.22635 0.94822 1.02353 1.04178 1.19860 0.93373 0.91968 0.84802 1.22818 1.02555 0.95589 1.03155 1.21869 0.94693 1.00758 0.97369 1.21274 0.95209 1.00488 0.93952 1.22817 0.95537 1.01378 1.01534 1.22666 0.94995 0.98912 0.85207 1.87894 1.71789 1.56797 1.14276 1.22525 0.93029 0.96524 0.89500 1.22260 0.96399 1.01997 0.98184 1.56494 1.75133 1.33254 1.24030 1.00456 0.74280 0.74828 0.69206 1.93367 1.78947 1.68357 1.59633 1.93305 1.36798 1.84470 1.84904 1.30882 1.47147 1.29392 1.07960 0.87048 1.24723 0.92249 0.98336 0.93092 1.69906 1.35156 1.38564 1.03927 0.86241 0.80032 0.80652 0.79119 1.19324 1.20120 1.18626 0.92798 0.88194 0.93016 0.91172 0.89201 0.92453 0.91647 0.91079 0.90148 0.91322 0.87510 0.93093 0.88805 0.93457 0.89503 0.91234 0.91301 0.76165 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 8.39 37.16 0.31 -2.70 16 2 C 0.19 3.06 0.83 -131.82 -0.11 2.95 16 3 C -0.18 -3.04 6.07 37.16 0.23 -2.82 16 4 C -0.11 -1.36 3.99 -26.74 -0.11 -1.47 16 5 C -0.09 -1.12 1.93 -90.44 -0.17 -1.30 16 6 C -0.17 -2.40 3.97 -26.59 -0.11 -2.51 16 7 C 0.06 0.78 6.84 37.21 0.25 1.04 16 8 O -0.39 -5.26 10.77 -35.23 -0.38 -5.63 16 9 C 0.06 0.66 6.84 37.20 0.25 0.91 16 10 C -0.15 -1.57 5.42 -26.59 -0.14 -1.72 16 11 N -1.13 -21.42 3.64 0.54 0.00 -21.41 16 12 S 2.71 69.08 4.69 -107.50 -0.50 68.58 16 13 O -1.01 -29.24 18.02 -57.17 -1.03 -30.27 16 14 O -1.00 -27.92 15.10 -57.17 -0.86 -28.79 16 15 C -1.02 -26.31 7.46 30.60 0.23 -26.08 16 16 H 0.11 2.56 5.22 -52.48 -0.27 2.29 16 17 C 0.13 3.59 5.46 -17.82 -0.10 3.49 16 18 N -0.85 -24.33 13.19 55.43 0.73 -23.60 16 19 Si 0.92 19.95 29.54 -169.99 -5.02 14.93 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.10 2.02 5.60 -51.93 -0.29 1.73 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.15 5.24 -51.93 -0.27 0.87 16 27 H 0.09 1.77 6.21 -51.93 -0.32 1.44 16 28 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.02 6.13 -51.93 -0.32 0.70 16 32 H 0.07 0.90 8.00 -51.93 -0.42 0.49 16 33 H 0.11 1.69 5.14 -51.93 -0.27 1.42 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.40 6.83 6.03 -34.47 -0.21 6.62 16 41 H 0.29 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 318.92 15.07 4.81 4.81 Total: -1.00 -33.04 318.92 -7.87 -40.92 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -6.15 Total: 10.67 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 0.54 Total: -30.18 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.73 Total: -45.02 kcal Atomic # 8 Polarization: -62.42 SS G_CDS: -2.27 Total: -64.69 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: 69.08 SS G_CDS: -0.50 Total: 68.58 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.04 -7.87 -40.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193005005.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.215 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds