Wall clock time and date at job start Tue Mar 31 2020 06:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47128 * 2 1 4 4 C 1.52993 * 109.47337 * 119.99977 * 2 1 3 5 5 C 1.52999 * 109.47373 * 186.75933 * 4 2 1 6 6 C 1.53174 * 109.54273 * 293.30197 * 5 4 2 7 7 C 1.53095 * 109.16077 * 183.15072 * 6 5 4 8 8 O 1.42905 * 109.41769 * 57.60964 * 7 6 5 9 9 C 1.42908 * 114.09485 * 298.84011 * 8 7 6 10 10 C 1.53090 * 109.41203 * 61.15811 * 9 8 7 11 11 N 1.46500 * 109.46961 * 240.00273 * 2 1 3 12 12 S 1.65602 * 120.00353 * 68.54162 * 11 2 1 13 13 O 1.42091 * 106.40453 * 178.53865 * 12 11 2 14 14 O 1.42104 * 106.39687 * 311.45768 * 12 11 2 15 15 C 1.76202 * 107.22012 * 64.99704 * 12 11 2 16 16 H 1.08005 * 119.99666 * 0.02562 * 15 12 11 17 17 C 1.37873 * 120.00112 * 180.02562 * 15 12 11 18 18 N 1.31518 * 120.00048 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 119.99864 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47043 * 90.00237 * 19 17 15 21 21 H 1.48497 * 109.47058 * 209.99565 * 19 17 15 22 22 H 1.48498 * 109.47598 * 330.00154 * 19 17 15 23 23 H 1.09002 * 109.46680 * 299.99814 * 1 2 3 24 24 H 1.08997 * 109.47285 * 59.99759 * 1 2 3 25 25 H 1.08996 * 109.46895 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47048 * 187.62302 * 3 2 1 27 27 H 1.09007 * 109.46874 * 307.62117 * 3 2 1 28 28 H 1.09001 * 109.46812 * 67.61861 * 3 2 1 29 29 H 1.09003 * 109.47127 * 66.76003 * 4 2 1 30 30 H 1.09005 * 109.47612 * 306.76441 * 4 2 1 31 31 H 1.09000 * 109.54076 * 53.56846 * 5 4 2 32 32 H 1.09001 * 109.52243 * 303.05162 * 6 5 4 33 33 H 1.08995 * 109.52819 * 63.24913 * 6 5 4 34 34 H 1.09004 * 109.48167 * 297.62578 * 7 6 5 35 35 H 1.09001 * 109.47984 * 177.59004 * 7 6 5 36 36 H 1.08999 * 109.48120 * 301.18064 * 9 8 7 37 37 H 1.09003 * 109.49104 * 181.14606 * 9 8 7 38 38 H 1.09006 * 109.52009 * 182.48364 * 10 9 8 39 39 H 1.09001 * 109.52519 * 62.29891 * 10 9 8 40 40 H 0.96998 * 120.00074 * 248.53893 * 11 2 1 41 41 H 0.96998 * 120.00179 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5606 -0.5758 1.3370 6 6 4.2157 -1.3366 0.1801 7 6 5.7378 -1.2514 0.3207 8 8 6.1283 -1.7834 1.5882 9 6 5.5838 -1.0822 2.7081 10 6 4.0556 -1.1606 2.6634 11 7 2.0183 -0.6906 -1.1962 12 16 1.7997 -0.0124 -2.6911 13 8 2.4055 -0.8956 -3.6249 14 8 0.4341 0.3744 -2.7603 15 6 2.7412 1.4764 -2.7313 16 1 3.3143 1.7764 -1.8663 17 6 2.7464 2.2584 -3.8668 18 7 2.0482 1.8933 -4.9198 19 14 3.7440 3.8371 -3.9090 20 1 5.1129 3.5445 -4.4048 21 1 3.0876 4.8133 -4.8152 22 1 3.8248 4.4085 -2.5407 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1214 1.4456 -0.1363 27 1 1.5697 1.9942 -0.8140 28 1 1.7922 1.9155 0.9503 29 1 1.7789 -1.7779 1.1908 30 1 1.5813 -0.2821 2.1351 31 1 3.8299 0.4788 1.2804 32 1 3.9052 -2.3811 0.2088 33 1 3.9120 -0.8912 -0.7672 34 1 6.0515 -0.2098 0.2513 35 1 6.2092 -1.8271 -0.4759 36 1 5.8955 -0.0384 2.6699 37 1 5.9443 -1.5357 3.6314 38 1 3.6372 -0.5893 3.4921 39 1 3.7418 -2.2015 2.7423 40 1 2.4697 -1.5450 -1.1127 41 1 2.0515 2.4437 -5.7186 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193005005.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:08 Heat of formation + Delta-G solvation = -169.441683 kcal Electronic energy + Delta-G solvation = -23660.425179 eV Core-core repulsion = 20279.532532 eV Total energy + Delta-G solvation = -3380.892647 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.77439 -38.77571 -37.28340 -36.05210 -35.15657 -34.58198 -32.21581 -31.36513 -29.08182 -28.39418 -27.36183 -24.44022 -24.05638 -21.34880 -20.77244 -20.58595 -19.16067 -18.20675 -17.09924 -17.00626 -16.82210 -16.73724 -15.89948 -15.66376 -15.56504 -15.22288 -14.93754 -14.58605 -14.00354 -13.97504 -13.78755 -13.55079 -13.23420 -13.01016 -12.76110 -12.73170 -12.57253 -12.42023 -12.35818 -12.25858 -12.16888 -12.13246 -12.04672 -11.68256 -11.49159 -11.19488 -11.09283 -10.91436 -10.77375 -10.39945 -9.89096 -8.69212 -7.35863 0.46254 1.35622 1.36487 1.51045 2.23507 2.64831 3.01243 3.06674 3.72044 3.76818 3.86217 3.98086 4.14395 4.20631 4.26965 4.36277 4.44095 4.53848 4.58606 4.66924 4.73127 4.86123 4.86182 4.90226 4.95128 4.99245 5.04997 5.12693 5.18665 5.22363 5.26898 5.32909 5.34762 5.47753 5.52276 5.67580 5.75503 6.03117 6.34610 6.47772 6.86628 8.27235 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017300 B = 0.006607 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.087971 B = 4237.199425 C = 4849.663997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.181 3.819 3 C -0.185 4.185 4 C -0.098 4.098 5 C -0.090 4.090 6 C -0.178 4.178 7 C 0.058 3.942 8 O -0.405 6.405 9 C 0.052 3.948 10 C -0.143 4.143 11 N -1.115 6.115 12 S 2.713 3.287 13 O -1.058 7.058 14 O -1.038 7.038 15 C -1.026 5.026 16 H 0.135 0.865 17 C 0.071 3.929 18 N -0.899 5.899 19 Si 0.982 3.018 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.242 1.242 23 H 0.088 0.912 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.413 0.587 41 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.572 -1.510 17.450 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.093 3.907 3 C -0.243 4.243 4 C -0.137 4.137 5 C -0.109 4.109 6 C -0.216 4.216 7 C -0.018 4.018 8 O -0.324 6.324 9 C -0.024 4.024 10 C -0.180 4.180 11 N -0.877 5.877 12 S 2.814 3.186 13 O -1.048 7.048 14 O -1.027 7.027 15 C -1.159 5.159 16 H 0.152 0.848 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.801 3.199 20 H -0.184 1.184 21 H -0.194 1.194 22 H -0.164 1.164 23 H 0.106 0.894 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.087 0.913 40 H 0.251 0.749 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.955 -1.888 16.596 17.165 hybrid contribution 0.549 0.762 -0.686 1.162 sum 4.504 -1.126 15.910 16.574 Atomic orbital electron populations 1.22619 0.95163 1.02641 1.03801 1.20200 0.93239 0.92216 0.85014 1.22795 1.02210 0.95558 1.03748 1.21832 0.94918 1.00882 0.96069 1.21277 0.94809 1.00350 0.94421 1.22781 0.96129 1.01557 1.01109 1.22622 0.94682 0.98939 0.85585 1.87877 1.72267 1.57503 1.14749 1.22775 0.93432 0.96935 0.89235 1.22205 0.95996 1.02259 0.97556 1.55975 1.75198 1.33623 1.22952 1.00063 0.73628 0.74735 0.70154 1.93295 1.79478 1.69448 1.62604 1.93273 1.38499 1.84928 1.86048 1.31184 1.46843 1.29190 1.08719 0.84754 1.25935 0.93240 1.02324 0.92577 1.70021 1.37465 1.40583 1.05057 0.85240 0.78370 0.76006 0.80299 1.18385 1.19423 1.16437 0.89358 0.92346 0.92426 0.91099 0.92809 0.88792 0.90959 0.87950 0.90178 0.91161 0.90031 0.93010 0.89083 0.92875 0.87550 0.88750 0.91274 0.74915 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.85 8.39 71.98 0.60 -5.24 16 2 C 0.18 5.55 0.83 3.60 0.00 5.56 16 3 C -0.19 -5.79 6.07 71.98 0.44 -5.35 16 4 C -0.10 -2.12 3.99 30.59 0.12 -2.00 16 5 C -0.09 -1.93 1.93 -10.68 -0.02 -1.95 16 6 C -0.18 -4.63 3.97 30.68 0.12 -4.51 16 7 C 0.06 1.49 6.84 72.01 0.49 1.98 16 8 O -0.40 -10.12 10.77 -148.98 -1.60 -11.72 16 9 C 0.05 0.96 6.84 72.01 0.49 1.45 16 10 C -0.14 -2.39 5.42 30.68 0.17 -2.22 16 11 N -1.12 -42.27 3.64 -152.21 -0.55 -42.82 16 12 S 2.71 142.83 4.69 -56.49 -0.27 142.56 16 13 O -1.06 -63.79 18.02 -128.00 -2.31 -66.10 16 14 O -1.04 -60.26 15.10 -128.00 -1.93 -62.19 16 15 C -1.03 -53.55 7.46 67.73 0.51 -53.04 16 16 H 0.13 6.13 5.22 -2.91 -0.02 6.11 16 17 C 0.07 3.87 5.46 84.65 0.46 4.34 16 18 N -0.90 -53.44 13.19 21.45 0.28 -53.16 16 19 Si 0.98 40.40 29.54 68.60 2.03 42.43 16 20 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 22 H -0.24 -9.03 7.11 99.48 0.71 -8.33 16 23 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.06 2.39 5.60 -2.39 -0.01 2.38 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 2.17 5.24 -2.39 -0.01 2.16 16 27 H 0.05 2.09 6.21 -2.38 -0.01 2.07 16 28 H 0.09 2.20 8.13 -2.39 -0.02 2.18 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.08 1.75 6.13 -2.39 -0.01 1.73 16 32 H 0.07 1.77 8.00 -2.39 -0.02 1.75 16 33 H 0.08 2.55 5.14 -2.39 -0.01 2.54 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.41 14.02 6.03 -96.75 -0.58 13.44 16 41 H 0.29 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -74.65 318.92 -0.51 -75.16 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: 0.45 Total: 36.84 kcal Atomic # 6 Polarization: -64.38 SS G_CDS: 3.39 Total: -60.99 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -0.27 Total: -95.98 kcal Atomic # 8 Polarization: -134.17 SS G_CDS: -5.84 Total: -140.02 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Atomic # 16 Polarization: 142.83 SS G_CDS: -0.27 Total: 142.56 kcal Total: -74.65 -0.51 -75.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193005005.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.278 kcal (2) G-P(sol) polarization free energy of solvation -74.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds