Wall clock time and date at job start Tue Mar 31 2020 06:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47051 * 2 1 4 4 C 1.52999 * 109.47545 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47252 * 179.97438 * 4 3 2 6 6 C 1.36931 * 119.99890 * 85.00007 * 5 4 3 7 7 H 1.08003 * 119.99871 * 216.41969 * 6 5 4 8 8 C 1.38816 * 120.00048 * 36.41463 * 6 5 4 9 9 N 1.31615 * 119.99724 * 22.48842 * 8 6 5 10 10 Si 1.86802 * 120.00175 * 202.48126 * 8 6 5 11 11 H 1.48501 * 109.46650 * 90.00271 * 10 8 6 12 12 H 1.48501 * 109.47226 * 210.00516 * 10 8 6 13 13 H 1.48503 * 109.46849 * 330.00612 * 10 8 6 14 14 S 1.65594 * 119.99900 * 265.00166 * 5 4 3 15 15 O 1.42100 * 104.27738 * 204.51533 * 14 5 4 16 16 O 1.42098 * 104.27942 * 332.37275 * 14 5 4 17 17 C 1.81400 * 104.45291 * 88.44278 * 14 5 4 18 18 C 1.52998 * 109.47272 * 180.02562 * 17 14 5 19 19 H 1.08994 * 110.27556 * 59.30070 * 18 17 14 20 20 C 1.54945 * 110.30669 * 181.39316 * 18 17 14 21 21 C 1.55418 * 100.89312 * 155.28925 * 20 18 17 22 22 C 1.54391 * 102.30704 * 325.98549 * 21 20 18 23 23 O 1.43241 * 107.58514 * 21.28756 * 22 21 20 24 24 H 1.09000 * 109.46958 * 60.00711 * 1 2 3 25 25 H 1.09004 * 109.46622 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47068 * 299.99720 * 1 2 3 27 27 H 1.08998 * 109.47589 * 240.00209 * 2 1 3 28 28 H 1.09006 * 109.47380 * 119.99179 * 2 1 3 29 29 H 1.09009 * 109.47207 * 59.99516 * 3 2 1 30 30 H 1.09004 * 109.47254 * 299.99912 * 3 2 1 31 31 H 1.08996 * 109.47112 * 299.99967 * 4 3 2 32 32 H 1.08999 * 109.47123 * 59.99599 * 4 3 2 33 33 H 0.97002 * 119.99849 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47183 * 300.00317 * 17 14 5 35 35 H 1.09006 * 109.46772 * 59.99637 * 17 14 5 36 36 H 1.09000 * 111.12167 * 273.27254 * 20 18 17 37 37 H 1.08993 * 111.12829 * 37.43883 * 20 18 17 38 38 H 1.08997 * 110.88103 * 207.75422 * 21 20 18 39 39 H 1.08994 * 110.93819 * 84.24560 * 21 20 18 40 40 H 1.08990 * 109.83006 * 261.77404 * 22 21 20 41 41 H 1.08995 * 109.82989 * 140.79788 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8239 0.0000 6 6 4.1885 3.5046 1.1810 7 1 3.9666 4.5607 1.2229 8 6 4.6056 2.8371 2.3245 9 7 5.2852 1.7148 2.2203 10 14 4.2024 3.5317 4.0110 11 1 2.8985 2.9897 4.4707 12 1 5.2659 3.1454 4.9727 13 1 4.1222 5.0124 3.9302 14 16 4.4526 3.5621 -1.4289 15 8 5.3826 4.5702 -1.0576 16 8 4.8340 2.4920 -2.2825 17 6 2.8994 4.3071 -1.9974 18 6 3.1356 5.0273 -3.3264 19 1 3.5014 4.3259 -4.0763 20 6 1.8279 5.7011 -3.8127 21 6 2.3977 6.8333 -4.7120 22 6 3.7010 7.2132 -3.9767 23 8 4.0715 6.1028 -3.1511 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9330 0.9290 0.8908 32 1 3.9337 0.9286 -0.8891 33 1 5.5770 1.2486 3.0193 34 1 2.1512 3.5266 -2.1354 35 1 2.5459 5.0218 -1.2541 36 1 1.2197 5.0061 -4.3917 37 1 1.2629 6.1118 -2.9760 38 1 1.7131 7.6806 -4.7506 39 1 2.6117 6.4638 -5.7148 40 1 3.5330 8.0944 -3.3577 41 1 4.4896 7.4141 -4.7018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193251320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:51 Heat of formation + Delta-G solvation = -124.805090 kcal Electronic energy + Delta-G solvation = -22869.102292 eV Core-core repulsion = 19490.145233 eV Total energy + Delta-G solvation = -3378.957059 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.39826 -36.34011 -35.78945 -34.59273 -33.76931 -32.34262 -31.64230 -31.21534 -28.09355 -26.26173 -24.55876 -22.33948 -21.83203 -21.35367 -20.33308 -18.32349 -17.08281 -16.95973 -16.30636 -15.76943 -15.52206 -14.97019 -14.68455 -14.43740 -14.33390 -13.56493 -13.44368 -13.24720 -12.97382 -12.40942 -12.25869 -12.14837 -11.87927 -11.72077 -11.48430 -11.30910 -11.29300 -11.20171 -10.94864 -10.85595 -10.81014 -10.77433 -10.55007 -10.36902 -10.23896 -9.96380 -9.78040 -9.56694 -9.50172 -8.90042 -7.59268 -6.16076 -3.85973 1.40962 3.25456 3.32923 3.35827 3.73597 3.99957 4.34332 4.44164 4.66383 4.78686 4.95907 4.98804 5.03804 5.18504 5.25212 5.38379 5.43429 5.47504 5.57245 5.61441 5.63159 5.71884 5.76131 5.87088 5.98241 6.04315 6.14099 6.20766 6.25746 6.35348 6.46667 6.64989 6.74953 6.95451 7.00218 7.37246 7.50890 7.87568 8.52494 9.11940 9.50008 10.86828 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.014547 B = 0.006294 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.332980 B = 4447.899670 C = 5407.091657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.135 4.135 4 C 0.115 3.885 5 N -0.847 5.847 6 C -0.287 4.287 7 H 0.089 0.911 8 C 0.040 3.960 9 N -0.859 5.859 10 Si 0.911 3.089 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.269 1.269 14 S 2.567 3.433 15 O -0.949 6.949 16 O -0.996 6.996 17 C -0.639 4.639 18 C 0.089 3.911 19 H 0.082 0.918 20 C -0.143 4.143 21 C -0.158 4.158 22 C 0.049 3.951 23 O -0.370 6.370 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.112 0.888 32 H 0.059 0.941 33 H 0.265 0.735 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.643 3.756 -8.889 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.175 4.175 4 C -0.012 4.012 5 N -0.678 5.678 6 C -0.422 4.422 7 H 0.107 0.893 8 C -0.167 4.167 9 N -0.498 5.498 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.194 1.194 14 S 2.665 3.335 15 O -0.938 6.938 16 O -0.986 6.986 17 C -0.763 4.763 18 C 0.031 3.969 19 H 0.099 0.901 20 C -0.181 4.181 21 C -0.196 4.196 22 C -0.027 4.027 23 O -0.289 6.289 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.130 0.870 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.518 3.692 -9.179 13.728 hybrid contribution -1.130 0.462 0.776 1.447 sum -10.648 4.154 -8.403 14.186 Atomic orbital electron populations 1.21771 0.96745 1.00726 1.01393 1.21470 0.94844 0.97888 1.01925 1.22108 0.98704 0.95414 1.01243 1.21349 0.90492 0.84699 1.04690 1.52640 1.77121 1.20349 1.17651 1.19026 1.43212 0.94978 0.84939 0.89333 1.25322 0.94765 0.96939 0.99705 1.70007 1.32528 1.17796 1.29477 0.86180 0.78040 0.79530 0.82412 1.20530 1.21091 1.19406 1.07014 0.76287 0.74963 0.75284 1.93477 1.57033 1.62059 1.81262 1.93424 1.80972 1.53689 1.70466 1.30928 1.27440 1.12207 1.05772 1.22567 0.89743 0.90077 0.94547 0.90069 1.23289 0.97331 0.97560 0.99934 1.23176 0.97397 0.99314 0.99677 1.23142 0.95873 0.90140 0.93589 1.88617 1.49841 1.24592 1.65897 0.93252 0.93435 0.92950 0.92366 0.91882 0.91316 0.94016 0.87043 0.92262 0.92465 0.84940 0.84860 0.89655 0.89824 0.89940 0.90436 0.91059 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.12 -1.89 5.93 -26.73 -0.16 -2.05 16 3 C -0.14 -2.45 5.51 -26.73 -0.15 -2.60 16 4 C 0.12 2.60 5.27 -4.04 -0.02 2.58 16 5 N -0.85 -20.88 2.76 -59.91 -0.17 -21.04 16 6 C -0.29 -7.56 8.74 -15.06 -0.13 -7.69 16 7 H 0.09 2.28 7.92 -52.48 -0.42 1.86 16 8 C 0.04 1.05 4.98 -17.43 -0.09 0.96 16 9 N -0.86 -23.64 11.40 55.49 0.63 -23.01 16 10 Si 0.91 20.35 29.61 -169.99 -5.03 15.31 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 14 S 2.57 60.30 5.22 -107.50 -0.56 59.74 16 15 O -0.95 -25.95 16.69 -60.26 -1.01 -26.96 16 16 O -1.00 -25.07 16.57 -57.54 -0.95 -26.02 16 17 C -0.64 -11.02 5.93 37.16 0.22 -10.80 16 18 C 0.09 1.41 3.46 -25.71 -0.09 1.32 16 19 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 20 C -0.14 -1.62 6.58 -24.42 -0.16 -1.78 16 21 C -0.16 -1.55 7.02 -24.72 -0.17 -1.72 16 22 C 0.05 0.62 7.80 37.89 0.30 0.92 16 23 O -0.37 -6.59 10.32 -36.91 -0.38 -6.98 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 1.30 8.14 -51.92 -0.42 0.87 16 30 H 0.04 0.68 6.86 -51.93 -0.36 0.32 16 31 H 0.11 2.77 5.46 -51.93 -0.28 2.49 16 32 H 0.06 1.34 6.84 -51.93 -0.36 0.98 16 33 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.13 1.93 6.86 -51.92 -0.36 1.57 16 35 H 0.13 2.20 8.14 -51.92 -0.42 1.78 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.92 8.06 -51.93 -0.42 0.50 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -33.36 341.16 -9.23 -42.59 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.82 Total: 3.62 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -0.08 Total: -22.40 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.47 Total: -44.05 kcal Atomic # 8 Polarization: -57.62 SS G_CDS: -2.34 Total: -59.96 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.31 kcal Atomic # 16 Polarization: 60.30 SS G_CDS: -0.56 Total: 59.74 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.36 -9.23 -42.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193251320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.216 kcal (2) G-P(sol) polarization free energy of solvation -33.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds