Wall clock time and date at job start Tue Mar 31 2020 06:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47051 * 2 1 4 4 C 1.52999 * 109.47545 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47252 * 179.97438 * 4 3 2 6 6 C 1.36931 * 119.99890 * 85.00007 * 5 4 3 7 7 H 1.08003 * 119.99871 * 216.41969 * 6 5 4 8 8 C 1.38816 * 120.00048 * 36.41463 * 6 5 4 9 9 N 1.31615 * 119.99724 * 22.48842 * 8 6 5 10 10 Si 1.86802 * 120.00175 * 202.48126 * 8 6 5 11 11 H 1.48501 * 109.46650 * 90.00271 * 10 8 6 12 12 H 1.48501 * 109.47226 * 210.00516 * 10 8 6 13 13 H 1.48503 * 109.46849 * 330.00612 * 10 8 6 14 14 S 1.65594 * 119.99900 * 265.00166 * 5 4 3 15 15 O 1.42100 * 104.27738 * 204.51533 * 14 5 4 16 16 O 1.42098 * 104.27942 * 332.37275 * 14 5 4 17 17 C 1.81400 * 104.45291 * 88.44278 * 14 5 4 18 18 C 1.52998 * 109.47272 * 180.02562 * 17 14 5 19 19 H 1.08994 * 110.27556 * 59.30070 * 18 17 14 20 20 C 1.54945 * 110.30669 * 181.39316 * 18 17 14 21 21 C 1.55418 * 100.89312 * 155.28925 * 20 18 17 22 22 C 1.54391 * 102.30704 * 325.98549 * 21 20 18 23 23 O 1.43241 * 107.58514 * 21.28756 * 22 21 20 24 24 H 1.09000 * 109.46958 * 60.00711 * 1 2 3 25 25 H 1.09004 * 109.46622 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47068 * 299.99720 * 1 2 3 27 27 H 1.08998 * 109.47589 * 240.00209 * 2 1 3 28 28 H 1.09006 * 109.47380 * 119.99179 * 2 1 3 29 29 H 1.09009 * 109.47207 * 59.99516 * 3 2 1 30 30 H 1.09004 * 109.47254 * 299.99912 * 3 2 1 31 31 H 1.08996 * 109.47112 * 299.99967 * 4 3 2 32 32 H 1.08999 * 109.47123 * 59.99599 * 4 3 2 33 33 H 0.97002 * 119.99849 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47183 * 300.00317 * 17 14 5 35 35 H 1.09006 * 109.46772 * 59.99637 * 17 14 5 36 36 H 1.09000 * 111.12167 * 273.27254 * 20 18 17 37 37 H 1.08993 * 111.12829 * 37.43883 * 20 18 17 38 38 H 1.08997 * 110.88103 * 207.75422 * 21 20 18 39 39 H 1.08994 * 110.93819 * 84.24560 * 21 20 18 40 40 H 1.08990 * 109.83006 * 261.77404 * 22 21 20 41 41 H 1.08995 * 109.82989 * 140.79788 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8239 0.0000 6 6 4.1885 3.5046 1.1810 7 1 3.9666 4.5607 1.2229 8 6 4.6056 2.8371 2.3245 9 7 5.2852 1.7148 2.2203 10 14 4.2024 3.5317 4.0110 11 1 2.8985 2.9897 4.4707 12 1 5.2659 3.1454 4.9727 13 1 4.1222 5.0124 3.9302 14 16 4.4526 3.5621 -1.4289 15 8 5.3826 4.5702 -1.0576 16 8 4.8340 2.4920 -2.2825 17 6 2.8994 4.3071 -1.9974 18 6 3.1356 5.0273 -3.3264 19 1 3.5014 4.3259 -4.0763 20 6 1.8279 5.7011 -3.8127 21 6 2.3977 6.8333 -4.7120 22 6 3.7010 7.2132 -3.9767 23 8 4.0715 6.1028 -3.1511 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9330 0.9290 0.8908 32 1 3.9337 0.9286 -0.8891 33 1 5.5770 1.2486 3.0193 34 1 2.1512 3.5266 -2.1354 35 1 2.5459 5.0218 -1.2541 36 1 1.2197 5.0061 -4.3917 37 1 1.2629 6.1118 -2.9760 38 1 1.7131 7.6806 -4.7506 39 1 2.6117 6.4638 -5.7148 40 1 3.5330 8.0944 -3.3577 41 1 4.4896 7.4141 -4.7018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193251320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:50 Heat of formation + Delta-G solvation = -148.419656 kcal Electronic energy + Delta-G solvation = -22870.126296 eV Core-core repulsion = 19490.145233 eV Total energy + Delta-G solvation = -3379.981063 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.48298 -38.08331 -37.73147 -36.55359 -35.26478 -33.49592 -33.11832 -32.71130 -29.60416 -27.41564 -26.40914 -23.86566 -22.74211 -22.48730 -21.72861 -20.21229 -18.91606 -18.21258 -18.03204 -17.25810 -16.87436 -16.60977 -16.26207 -15.94027 -15.73042 -15.14875 -14.73889 -14.57460 -14.04407 -13.85455 -13.71683 -13.55206 -13.10910 -13.04194 -12.96717 -12.91427 -12.78417 -12.70954 -12.67723 -12.57642 -12.20198 -12.10883 -11.87707 -11.79463 -11.75370 -11.60278 -11.34167 -11.18855 -10.78135 -10.63488 -9.51046 -8.14326 -5.90310 -0.36950 1.48642 1.49223 1.60155 2.20942 2.57157 2.66929 2.98993 3.24961 3.41941 3.55002 3.71227 3.88076 4.05547 4.10741 4.16497 4.25275 4.36258 4.39819 4.41586 4.57925 4.59484 4.80904 4.85246 4.90205 4.94032 4.96223 5.00994 5.04245 5.11280 5.22716 5.30826 5.38725 5.50440 5.57820 5.70543 5.94240 5.99850 6.54280 7.13470 7.51281 8.88197 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.014547 B = 0.006294 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.332980 B = 4447.899670 C = 5407.091657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.112 3.888 5 N -0.861 5.861 6 C -0.303 4.303 7 H 0.088 0.912 8 C -0.008 4.008 9 N -0.896 5.896 10 Si 0.975 3.025 11 H -0.264 1.264 12 H -0.288 1.288 13 H -0.264 1.264 14 S 2.551 3.449 15 O -1.003 7.003 16 O -1.027 7.027 17 C -0.600 4.600 18 C 0.072 3.928 19 H 0.082 0.918 20 C -0.134 4.134 21 C -0.147 4.147 22 C 0.032 3.968 23 O -0.415 6.415 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.266 0.734 34 H 0.168 0.832 35 H 0.146 0.854 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.128 4.760 -9.917 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C -0.165 4.165 4 C -0.015 4.015 5 N -0.691 5.691 6 C -0.438 4.438 7 H 0.106 0.894 8 C -0.212 4.212 9 N -0.537 5.537 10 Si 0.799 3.201 11 H -0.189 1.189 12 H -0.215 1.215 13 H -0.189 1.189 14 S 2.656 3.344 15 O -0.993 6.993 16 O -1.017 7.017 17 C -0.732 4.732 18 C 0.013 3.987 19 H 0.100 0.900 20 C -0.172 4.172 21 C -0.184 4.184 22 C -0.044 4.044 23 O -0.335 6.335 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.185 0.815 35 H 0.165 0.835 36 H 0.131 0.869 37 H 0.110 0.890 38 H 0.128 0.872 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.954 4.659 -10.178 17.120 hybrid contribution -0.013 0.200 0.960 0.980 sum -12.967 4.859 -9.218 16.635 Atomic orbital electron populations 1.21721 0.94087 1.02138 1.02100 1.21471 0.97103 0.95806 1.01712 1.21993 0.94985 0.97576 1.01919 1.21364 0.93705 0.83630 1.02795 1.52730 1.77666 1.21070 1.17625 1.19257 1.43382 0.95188 0.85948 0.89440 1.26189 0.94451 0.97283 1.03239 1.70132 1.33861 1.19284 1.30392 0.85211 0.78134 0.79003 0.77742 1.18891 1.21453 1.18859 1.06987 0.78275 0.74239 0.74855 1.93407 1.61004 1.62834 1.82045 1.93374 1.82916 1.54857 1.70540 1.30530 1.22380 1.13029 1.07219 1.22880 0.92365 0.90294 0.93181 0.90009 1.23324 0.95045 0.98101 1.00757 1.23190 0.95931 0.99754 0.99544 1.23473 0.98006 0.89032 0.93848 1.88593 1.51380 1.26230 1.67339 0.91862 0.91746 0.92910 0.91858 0.93017 0.92096 0.91709 0.89770 0.93309 0.92447 0.81462 0.83543 0.86861 0.89036 0.87161 0.89004 0.90391 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.91 71.98 0.71 -2.50 16 2 C -0.12 -3.60 5.93 30.59 0.18 -3.42 16 3 C -0.13 -4.42 5.51 30.59 0.17 -4.25 16 4 C 0.11 5.19 5.27 86.38 0.46 5.65 16 5 N -0.86 -43.48 2.76 -343.44 -0.95 -44.42 16 6 C -0.30 -16.38 8.74 84.04 0.73 -15.64 16 7 H 0.09 4.61 7.92 -2.91 -0.02 4.59 16 8 C -0.01 -0.44 4.98 84.86 0.42 -0.01 16 9 N -0.90 -51.24 11.40 21.65 0.25 -51.00 16 10 Si 0.98 42.22 29.61 68.60 2.03 44.25 16 11 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 12 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 14 S 2.55 122.61 5.22 -56.49 -0.30 122.31 16 15 O -1.00 -57.32 16.69 -125.05 -2.09 -59.41 16 16 O -1.03 -53.38 16.57 -127.65 -2.11 -55.49 16 17 C -0.60 -19.50 5.93 71.98 0.43 -19.07 16 18 C 0.07 2.09 3.46 31.26 0.11 2.20 16 19 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 20 C -0.13 -2.45 6.58 32.09 0.21 -2.23 16 21 C -0.15 -2.28 7.02 31.90 0.22 -2.05 16 22 C 0.03 0.75 7.80 72.45 0.56 1.32 16 23 O -0.41 -14.50 10.32 -147.38 -1.52 -16.02 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.06 1.94 6.86 -2.39 -0.02 1.92 16 31 H 0.08 4.39 5.46 -2.39 -0.01 4.38 16 32 H 0.05 2.29 6.84 -2.39 -0.02 2.27 16 33 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 34 H 0.17 4.25 6.86 -2.39 -0.02 4.23 16 35 H 0.15 4.48 8.14 -2.39 -0.02 4.46 16 36 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.56 8.06 -2.39 -0.02 1.54 16 38 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -77.10 341.16 0.52 -76.58 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.99 Total: 23.21 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 4.21 Total: -40.02 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -0.70 Total: -95.42 kcal Atomic # 8 Polarization: -125.20 SS G_CDS: -5.72 Total: -130.92 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 122.61 SS G_CDS: -0.30 Total: 122.31 kcal Total: -77.10 0.52 -76.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193251320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.836 kcal (2) G-P(sol) polarization free energy of solvation -77.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds