Wall clock time and date at job start Tue Mar 31 2020 06:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47032 * 2 1 4 4 C 1.52998 * 109.47390 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47692 * 179.21453 * 4 3 2 6 6 C 1.36944 * 119.99456 * 301.68877 * 5 4 3 7 7 H 1.08000 * 120.00101 * 316.07441 * 6 5 4 8 8 C 1.38817 * 119.99564 * 136.08039 * 6 5 4 9 9 N 1.31610 * 120.00388 * 345.25614 * 8 6 5 10 10 Si 1.86796 * 119.99525 * 165.25858 * 8 6 5 11 11 H 1.48493 * 109.47565 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47207 * 119.99704 * 10 8 6 13 13 H 1.48503 * 109.47222 * 239.99488 * 10 8 6 14 14 S 1.65596 * 120.00497 * 121.68645 * 5 4 3 15 15 O 1.42097 * 104.27833 * 166.22475 * 14 5 4 16 16 O 1.42097 * 104.27597 * 38.36774 * 14 5 4 17 17 C 1.81398 * 104.44993 * 282.29974 * 14 5 4 18 18 C 1.53173 * 109.54574 * 77.71660 * 17 14 5 19 19 C 1.53093 * 109.16375 * 176.85025 * 18 17 14 20 20 O 1.42898 * 109.41382 * 302.38897 * 19 18 17 21 21 C 1.42904 * 114.09841 * 61.15964 * 20 19 18 22 22 C 1.53092 * 109.41507 * 298.84061 * 21 20 19 23 23 H 1.09003 * 109.47157 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47434 * 300.00215 * 1 2 3 25 25 H 1.09007 * 109.47491 * 59.99729 * 1 2 3 26 26 H 1.08994 * 109.47344 * 240.00112 * 2 1 3 27 27 H 1.08996 * 109.47092 * 119.99657 * 2 1 3 28 28 H 1.08998 * 109.47420 * 59.99882 * 3 2 1 29 29 H 1.08998 * 109.47406 * 299.99860 * 3 2 1 30 30 H 1.09002 * 109.46905 * 59.21096 * 4 3 2 31 31 H 1.09004 * 109.46949 * 299.21211 * 4 3 2 32 32 H 0.96997 * 120.00591 * 180.02562 * 9 8 6 33 33 H 1.09006 * 109.61562 * 317.49106 * 17 14 5 34 34 H 1.09006 * 109.52177 * 296.75092 * 18 17 14 35 35 H 1.08998 * 109.52435 * 56.93833 * 18 17 14 36 36 H 1.08998 * 109.48393 * 182.40790 * 19 18 17 37 37 H 1.08997 * 109.48407 * 62.37132 * 19 18 17 38 38 H 1.09004 * 109.48260 * 178.86020 * 21 20 19 39 39 H 1.08994 * 109.49113 * 58.83055 * 21 20 19 40 40 H 1.09001 * 109.52511 * 297.70393 * 22 21 20 41 41 H 1.09001 * 109.52496 * 177.51636 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8236 -0.0183 6 6 3.6995 3.6627 -1.0394 7 1 3.7176 3.3098 -2.0599 8 6 3.3128 4.9668 -0.7626 9 7 3.0101 5.3160 0.4697 10 14 3.2221 6.2261 -2.1393 11 1 3.6097 5.5862 -3.4219 12 1 1.8349 6.7458 -2.2442 13 1 4.1500 7.3479 -1.8460 14 16 5.0440 3.3701 1.1949 15 8 5.5709 4.5914 0.6951 16 8 5.8940 2.2674 1.4793 17 6 3.9207 3.6827 2.5846 18 6 3.5499 2.3551 3.2525 19 6 2.6659 2.6350 4.4706 20 8 3.3588 3.5015 5.3713 21 6 3.6895 4.7761 4.8163 22 6 4.6147 4.5823 3.6120 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.9336 0.9164 -0.8820 31 1 3.9329 0.9412 0.8979 32 1 2.7395 6.2272 0.6631 33 1 3.0174 4.1732 2.2217 34 1 3.0063 1.7302 2.5439 35 1 4.4571 1.8417 3.5710 36 1 2.4340 1.6969 4.9749 37 1 1.7409 3.1120 4.1467 38 1 4.1952 5.3804 5.5695 39 1 2.7781 5.2813 4.4969 40 1 5.5434 4.1138 3.9378 41 1 4.8327 5.5501 3.1606 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259913456.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:49 Heat of formation + Delta-G solvation = -134.021489 kcal Electronic energy + Delta-G solvation = -23834.497205 eV Core-core repulsion = 20455.140493 eV Total energy + Delta-G solvation = -3379.356712 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -38.79544 -36.39042 -35.82311 -34.49419 -33.78744 -33.27625 -31.48216 -30.73810 -27.96337 -25.05807 -24.59869 -23.27017 -22.24463 -20.45882 -19.89191 -18.75846 -17.07663 -16.37764 -15.76941 -15.71113 -15.15183 -14.90256 -14.52976 -14.41973 -14.13542 -13.74804 -13.54126 -13.24001 -13.03562 -12.64009 -12.17133 -11.97006 -11.76697 -11.44003 -11.26300 -11.10558 -11.04601 -11.03350 -10.82086 -10.68704 -10.55083 -10.49416 -10.39354 -10.31102 -10.12886 -9.96662 -9.78833 -9.66502 -9.05868 -8.71362 -7.63787 -6.40723 -4.03890 1.75020 3.24673 3.35037 3.36638 4.08649 4.15466 4.41523 4.90525 4.97362 5.13173 5.24215 5.34555 5.37688 5.43432 5.52253 5.54729 5.57632 5.75702 5.82703 5.88462 5.90342 6.03991 6.13577 6.15636 6.17745 6.23369 6.25219 6.28449 6.29917 6.41932 6.46644 6.52941 6.88687 6.96998 7.09001 7.45036 7.47245 7.60335 8.41185 9.04514 9.46413 10.71804 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.011593 B = 0.009466 C = 0.006745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.645250 B = 2957.342661 C = 4150.307195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.124 4.124 4 C 0.128 3.872 5 N -0.862 5.862 6 C -0.282 4.282 7 H 0.081 0.919 8 C 0.049 3.951 9 N -0.897 5.897 10 Si 0.931 3.069 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.279 1.279 14 S 2.609 3.391 15 O -0.952 6.952 16 O -1.016 7.016 17 C -0.588 4.588 18 C -0.141 4.141 19 C 0.072 3.928 20 O -0.389 6.389 21 C 0.073 3.927 22 C -0.132 4.132 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.275 0.725 33 H 0.182 0.818 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 -4.573 4.748 8.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.163 4.163 4 C 0.001 3.999 5 N -0.692 5.692 6 C -0.415 4.415 7 H 0.098 0.902 8 C -0.155 4.155 9 N -0.540 5.540 10 Si 0.758 3.242 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.204 1.204 14 S 2.708 3.292 15 O -0.942 6.942 16 O -1.006 7.006 17 C -0.695 4.695 18 C -0.179 4.179 19 C -0.006 4.006 20 O -0.308 6.308 21 C -0.005 4.005 22 C -0.171 4.171 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.199 0.801 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.603 -4.377 4.983 7.548 hybrid contribution -0.813 0.832 -0.595 1.307 sum -4.417 -3.546 4.388 7.165 Atomic orbital electron populations 1.21747 0.96460 1.00605 1.01788 1.21552 0.95384 0.98153 1.01365 1.21883 0.96425 0.94586 1.03441 1.21153 0.93451 0.85084 1.00202 1.52753 1.62591 1.15874 1.37979 1.18825 1.42520 0.92488 0.87669 0.90180 1.25345 0.93518 0.99198 0.97423 1.69312 1.45040 1.20286 1.19329 0.85807 0.77201 0.80595 0.80573 1.19566 1.21162 1.20444 1.05436 0.74892 0.73428 0.75483 1.93417 1.77452 1.46851 1.76495 1.93420 1.65352 1.55207 1.86645 1.30842 1.20633 1.02612 1.15439 1.22015 1.01604 0.95811 0.98509 1.22446 0.93949 0.93820 0.90370 1.87839 1.77316 1.26499 1.39128 1.22434 0.97999 0.84986 0.95038 1.21809 0.98405 1.00822 0.96047 0.93552 0.92986 0.92842 0.92368 0.92634 0.92106 0.90639 0.93389 0.92463 0.91508 0.80054 0.89994 0.90612 0.89269 0.93004 0.89233 0.92709 0.91951 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.16 0.37 -1.46 16 2 C -0.13 -1.74 5.93 -26.73 -0.16 -1.90 16 3 C -0.12 -2.15 4.93 -26.73 -0.13 -2.29 16 4 C 0.13 2.55 5.09 -4.05 -0.02 2.53 16 5 N -0.86 -20.44 2.86 -59.91 -0.17 -20.61 16 6 C -0.28 -7.13 8.15 -15.05 -0.12 -7.25 16 7 H 0.08 2.00 7.87 -52.49 -0.41 1.58 16 8 C 0.05 1.24 4.23 -17.43 -0.07 1.17 16 9 N -0.90 -22.38 9.07 55.49 0.50 -21.87 16 10 Si 0.93 20.85 29.58 -169.99 -5.03 15.82 16 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 S 2.61 63.14 4.14 -107.50 -0.44 62.69 16 15 O -0.95 -26.29 15.22 -57.54 -0.88 -27.16 16 16 O -1.02 -25.67 16.37 -57.54 -0.94 -26.61 16 17 C -0.59 -11.82 2.46 -26.55 -0.07 -11.89 16 18 C -0.14 -2.46 5.06 -26.59 -0.13 -2.59 16 19 C 0.07 1.09 6.84 37.21 0.25 1.35 16 20 O -0.39 -6.43 10.77 -35.23 -0.38 -6.81 16 21 C 0.07 1.14 6.84 37.20 0.25 1.40 16 22 C -0.13 -2.41 5.36 -26.59 -0.14 -2.55 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.08 7.29 -51.93 -0.38 0.71 16 29 H 0.07 1.43 7.60 -51.93 -0.39 1.03 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 1.07 6.18 -51.93 -0.32 0.75 16 32 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 33 H 0.18 3.89 5.78 -51.92 -0.30 3.59 16 34 H 0.08 1.35 5.27 -51.93 -0.27 1.07 16 35 H 0.08 1.35 7.78 -51.93 -0.40 0.95 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -29.66 327.91 -9.06 -38.72 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.69 Total: 4.36 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 0.03 Total: -23.49 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.33 Total: -42.48 kcal Atomic # 8 Polarization: -58.38 SS G_CDS: -2.20 Total: -60.58 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Atomic # 16 Polarization: 63.14 SS G_CDS: -0.44 Total: 62.69 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.66 -9.06 -38.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259913456.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.297 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds