Wall clock time and date at job start Tue Mar 31 2020 07:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46901 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99883 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 C 1.52997 * 109.46903 * 240.00006 * 2 1 3 13 13 N 1.46499 * 109.47555 * 60.00409 * 12 2 1 14 14 S 1.65600 * 120.00231 * 164.99916 * 13 12 2 15 15 O 1.42103 * 104.27448 * 181.06805 * 14 13 12 16 16 O 1.42097 * 104.27658 * 308.92798 * 14 13 12 17 17 C 1.81397 * 104.44752 * 64.99762 * 14 13 12 18 18 C 1.53004 * 109.46957 * 180.02562 * 17 14 13 19 19 H 1.09003 * 110.80096 * 305.70459 * 18 17 14 20 20 C 1.54812 * 110.91035 * 182.07467 * 18 17 14 21 21 C 1.54096 * 104.18668 * 220.92212 * 20 18 17 22 22 O 1.43744 * 107.29815 * 357.96611 * 21 20 18 23 23 C 1.44426 * 106.99915 * 26.48715 * 22 21 20 24 24 H 1.09000 * 109.47703 * 300.00482 * 1 2 3 25 25 H 1.09007 * 109.47140 * 60.00334 * 1 2 3 26 26 H 1.09000 * 109.47809 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46412 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47298 * 299.99321 * 3 2 1 29 29 H 1.09001 * 109.47411 * 60.00254 * 3 2 1 30 30 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.46788 * 180.02562 * 12 2 1 32 32 H 1.08999 * 109.46950 * 299.99654 * 12 2 1 33 33 H 0.97006 * 119.99411 * 344.99392 * 13 12 2 34 34 H 1.08994 * 109.47357 * 299.99800 * 17 14 13 35 35 H 1.09005 * 109.47350 * 60.00118 * 17 14 13 36 36 H 1.09008 * 110.48561 * 339.59509 * 20 18 17 37 37 H 1.08995 * 110.48976 * 102.24327 * 20 18 17 38 38 H 1.09007 * 109.87978 * 117.39251 * 21 20 18 39 39 H 1.09005 * 109.88048 * 238.39362 * 21 20 18 40 40 H 1.08995 * 110.65390 * 201.47835 * 23 22 21 41 41 H 1.09003 * 110.59443 * 78.46761 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8302 2.6033 8 14 2.3212 -1.1203 4.0080 9 1 1.8268 -0.4199 5.2204 10 1 1.8257 -2.5201 4.0078 11 1 3.8062 -1.1209 4.0082 12 6 2.0400 -0.7212 -1.2492 13 7 1.5517 -0.0306 -2.4454 14 16 2.2318 -0.3496 -3.9213 15 8 1.5365 0.5043 -4.8194 16 8 3.6281 -0.2021 -3.7029 17 6 1.8181 -2.0859 -4.2445 18 6 2.3989 -2.5054 -5.5965 19 1 2.0701 -1.8291 -6.3856 20 6 2.0208 -3.9691 -5.9301 21 6 3.3059 -4.5614 -6.5402 22 8 4.2823 -3.5076 -6.5861 23 6 3.9461 -2.5743 -5.5364 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3635 -1.0276 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 0.7088 1.1614 3.4844 31 1 3.1300 -0.7216 -1.2490 32 1 1.6766 -1.7489 -1.2492 33 1 0.8300 0.6134 -2.3729 34 1 2.2395 -2.7123 -3.4584 35 1 0.7346 -2.2042 -4.2617 36 1 1.7453 -4.5080 -5.0235 37 1 1.2066 -3.9973 -6.6541 38 1 3.6704 -5.3775 -5.9162 39 1 3.1039 -4.9267 -7.5471 40 1 4.3822 -1.5959 -5.7377 41 1 4.2761 -2.9511 -4.5683 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309569004.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:06 Heat of formation + Delta-G solvation = -129.884612 kcal Electronic energy + Delta-G solvation = -22403.694692 eV Core-core repulsion = 19024.517369 eV Total energy + Delta-G solvation = -3379.177323 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.68190 -37.08957 -36.75460 -35.75367 -34.03877 -33.25815 -30.57529 -30.19402 -26.92293 -25.71956 -25.56039 -24.54355 -22.94881 -21.11148 -19.23115 -18.83834 -17.69610 -17.04042 -16.23503 -16.01508 -15.80762 -15.51917 -15.35844 -14.78489 -14.30308 -14.01938 -13.57109 -13.32219 -13.11098 -12.72626 -12.51817 -12.27406 -11.96982 -11.88792 -11.77467 -11.74361 -11.52360 -11.37784 -11.13440 -11.04135 -10.93081 -10.73799 -10.52726 -10.39501 -10.19330 -9.94240 -9.67168 -9.36716 -8.85740 -8.79861 -8.39132 -6.03663 -4.14981 0.41287 2.99524 3.26979 3.32469 3.34964 3.56905 3.90711 4.02408 4.24033 4.36507 4.39449 4.57257 4.76042 4.87368 4.92681 5.15757 5.22767 5.36481 5.42819 5.46120 5.56948 5.62684 5.72064 5.77805 6.11692 6.39987 6.46158 6.55568 6.72395 6.89515 6.97221 7.05205 7.32636 7.49550 7.57164 7.67604 8.01345 8.12868 8.36854 8.85046 9.50935 10.97388 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023586 B = 0.004110 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.847204 B = 6811.658696 C = 7392.496352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.063 3.937 3 C -0.131 4.131 4 C -0.510 4.510 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.893 3.107 9 H -0.288 1.288 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.124 3.876 13 N -1.109 6.109 14 S 2.606 3.394 15 O -0.969 6.969 16 O -0.953 6.953 17 C -0.628 4.628 18 C -0.114 4.114 19 H 0.100 0.900 20 C -0.144 4.144 21 C 0.044 3.956 22 O -0.373 6.373 23 C 0.035 3.965 24 H 0.086 0.914 25 H 0.008 0.992 26 H 0.026 0.974 27 H 0.027 0.973 28 H 0.010 0.990 29 H 0.084 0.916 30 H 0.261 0.739 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.416 0.584 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.248 -8.117 -14.016 16.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.062 3.938 3 C -0.189 4.189 4 C -0.549 4.549 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.721 3.279 9 H -0.213 1.213 10 H -0.204 1.204 11 H -0.203 1.203 12 C -0.001 4.001 13 N -0.871 5.871 14 S 2.698 3.302 15 O -0.959 6.959 16 O -0.943 6.943 17 C -0.756 4.756 18 C -0.134 4.134 19 H 0.118 0.882 20 C -0.183 4.183 21 C -0.033 4.033 22 O -0.292 6.292 23 C -0.041 4.041 24 H 0.104 0.896 25 H 0.027 0.973 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.029 0.971 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.253 0.747 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.123 0.877 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.486 -7.519 -14.548 16.383 hybrid contribution -0.636 -0.942 1.357 1.771 sum -0.151 -8.461 -13.191 15.672 Atomic orbital electron populations 1.21841 0.97833 0.99022 1.00276 1.18251 0.92710 0.92925 0.89965 1.21810 0.98697 0.98197 1.00224 1.20962 1.31751 1.12195 0.90016 0.92520 1.24886 0.94841 0.94892 0.98845 1.69803 1.36444 1.22597 1.23359 0.86646 0.79273 0.79672 0.82306 1.21337 1.20369 1.20256 1.21683 0.98533 0.94693 0.85177 1.55506 1.53120 1.55704 1.22788 1.04986 0.74976 0.76762 0.73518 1.93574 1.75017 1.62712 1.64599 1.93601 1.31160 1.84911 1.84625 1.30691 1.11813 1.28175 1.04927 1.22474 0.96609 0.99290 0.95031 0.88219 1.22991 0.98797 0.94248 1.02230 1.23200 0.87706 0.90884 1.01548 1.88894 1.50921 1.35697 1.53712 1.23988 0.92505 0.95135 0.92501 0.89574 0.97272 0.95493 0.95345 0.97101 0.89779 0.92911 0.91343 0.93260 0.74704 0.84505 0.84415 0.89814 0.89910 0.92071 0.89656 0.87716 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 2 C 0.06 1.42 0.51 -155.66 -0.08 1.34 16 3 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 4 C -0.51 -12.79 8.01 -34.44 -0.28 -13.07 16 5 H 0.06 1.39 7.74 -52.49 -0.41 0.99 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -23.24 9.35 55.43 0.52 -22.72 16 8 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 9 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 12 C 0.12 2.30 4.96 -4.04 -0.02 2.28 16 13 N -1.11 -17.81 5.22 -10.61 -0.06 -17.86 16 14 S 2.61 37.71 5.29 -107.50 -0.57 37.14 16 15 O -0.97 -16.30 18.08 -57.54 -1.04 -17.34 16 16 O -0.95 -16.47 16.35 -57.54 -0.94 -17.41 16 17 C -0.63 -6.49 5.45 37.16 0.20 -6.29 16 18 C -0.11 -1.17 3.12 -88.61 -0.28 -1.44 16 19 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 20 C -0.14 -1.18 6.60 -25.20 -0.17 -1.35 16 21 C 0.04 0.39 7.70 37.73 0.29 0.68 16 22 O -0.37 -4.53 11.52 -35.23 -0.41 -4.93 16 23 C 0.04 0.41 6.24 38.21 0.24 0.65 16 24 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 25 H 0.01 0.16 6.60 -51.93 -0.34 -0.18 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.01 0.21 7.19 -51.93 -0.37 -0.16 16 29 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 30 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.07 1.30 7.70 -51.93 -0.40 0.90 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.42 6.63 6.44 -34.48 -0.22 6.41 16 34 H 0.14 1.26 8.05 -51.93 -0.42 0.84 16 35 H 0.14 1.16 8.14 -51.92 -0.42 0.74 16 36 H 0.08 0.61 7.86 -51.92 -0.41 0.21 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 1.24 7.72 -51.93 -0.40 0.84 16 41 H 0.08 0.84 7.98 -51.93 -0.41 0.43 16 LS Contribution 333.43 15.07 5.02 5.02 Total: -1.00 -30.43 333.43 -8.60 -39.03 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.53 Total: 4.81 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 0.42 Total: -20.86 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.46 Total: -40.58 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -2.39 Total: -39.68 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 37.71 SS G_CDS: -0.57 Total: 37.14 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.43 -8.60 -39.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309569004.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.856 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds