Wall clock time and date at job start Tue Mar 31 2020 07:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46901 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99883 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 C 1.52997 * 109.46903 * 240.00006 * 2 1 3 13 13 N 1.46499 * 109.47555 * 60.00409 * 12 2 1 14 14 S 1.65600 * 120.00231 * 164.99916 * 13 12 2 15 15 O 1.42103 * 104.27448 * 181.06805 * 14 13 12 16 16 O 1.42097 * 104.27658 * 308.92798 * 14 13 12 17 17 C 1.81397 * 104.44752 * 64.99762 * 14 13 12 18 18 C 1.53004 * 109.46957 * 180.02562 * 17 14 13 19 19 H 1.09003 * 110.80096 * 305.70459 * 18 17 14 20 20 C 1.54812 * 110.91035 * 182.07467 * 18 17 14 21 21 C 1.54096 * 104.18668 * 220.92212 * 20 18 17 22 22 O 1.43744 * 107.29815 * 357.96611 * 21 20 18 23 23 C 1.44426 * 106.99915 * 26.48715 * 22 21 20 24 24 H 1.09000 * 109.47703 * 300.00482 * 1 2 3 25 25 H 1.09007 * 109.47140 * 60.00334 * 1 2 3 26 26 H 1.09000 * 109.47809 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46412 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47298 * 299.99321 * 3 2 1 29 29 H 1.09001 * 109.47411 * 60.00254 * 3 2 1 30 30 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.46788 * 180.02562 * 12 2 1 32 32 H 1.08999 * 109.46950 * 299.99654 * 12 2 1 33 33 H 0.97006 * 119.99411 * 344.99392 * 13 12 2 34 34 H 1.08994 * 109.47357 * 299.99800 * 17 14 13 35 35 H 1.09005 * 109.47350 * 60.00118 * 17 14 13 36 36 H 1.09008 * 110.48561 * 339.59509 * 20 18 17 37 37 H 1.08995 * 110.48976 * 102.24327 * 20 18 17 38 38 H 1.09007 * 109.87978 * 117.39251 * 21 20 18 39 39 H 1.09005 * 109.88048 * 238.39362 * 21 20 18 40 40 H 1.08995 * 110.65390 * 201.47835 * 23 22 21 41 41 H 1.09003 * 110.59443 * 78.46761 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8302 2.6033 8 14 2.3212 -1.1203 4.0080 9 1 1.8268 -0.4199 5.2204 10 1 1.8257 -2.5201 4.0078 11 1 3.8062 -1.1209 4.0082 12 6 2.0400 -0.7212 -1.2492 13 7 1.5517 -0.0306 -2.4454 14 16 2.2318 -0.3496 -3.9213 15 8 1.5365 0.5043 -4.8194 16 8 3.6281 -0.2021 -3.7029 17 6 1.8181 -2.0859 -4.2445 18 6 2.3989 -2.5054 -5.5965 19 1 2.0701 -1.8291 -6.3856 20 6 2.0208 -3.9691 -5.9301 21 6 3.3059 -4.5614 -6.5402 22 8 4.2823 -3.5076 -6.5861 23 6 3.9461 -2.5743 -5.5364 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3635 -1.0276 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 0.7088 1.1614 3.4844 31 1 3.1300 -0.7216 -1.2490 32 1 1.6766 -1.7489 -1.2492 33 1 0.8300 0.6134 -2.3729 34 1 2.2395 -2.7123 -3.4584 35 1 0.7346 -2.2042 -4.2617 36 1 1.7453 -4.5080 -5.0235 37 1 1.2066 -3.9973 -6.6541 38 1 3.6704 -5.3775 -5.9162 39 1 3.1039 -4.9267 -7.5471 40 1 4.3822 -1.5959 -5.7377 41 1 4.2761 -2.9511 -4.5683 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001309569004.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:06 Heat of formation + Delta-G solvation = -151.802179 kcal Electronic energy + Delta-G solvation = -22404.645109 eV Core-core repulsion = 19024.517369 eV Total energy + Delta-G solvation = -3380.127740 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.45493 -38.61824 -38.08182 -36.99107 -34.89597 -34.86207 -32.30723 -30.88829 -27.79730 -27.49747 -27.35441 -26.18519 -23.67685 -21.88198 -20.74809 -20.21470 -18.88323 -18.05120 -17.59495 -17.22275 -17.09474 -16.59960 -16.38902 -16.19594 -15.52153 -15.10736 -14.94656 -14.80590 -14.08611 -14.01057 -13.54585 -13.34476 -13.32613 -13.24474 -13.18145 -13.05700 -12.86760 -12.69008 -12.52626 -12.45944 -12.26897 -12.19774 -12.06260 -11.73644 -11.50170 -11.37650 -11.06505 -10.71242 -10.64494 -10.36060 -10.11666 -7.95960 -6.12350 -0.70008 1.47730 1.49911 1.55112 1.82033 2.49879 2.72747 2.91351 3.19087 3.28032 3.35679 3.60687 3.69513 4.05615 4.14773 4.25432 4.26964 4.35903 4.56616 4.62769 4.69717 4.78109 4.80410 4.84942 4.86273 4.99717 5.12364 5.13937 5.14599 5.26733 5.30241 5.55482 5.72601 5.73684 5.81142 6.12531 6.21778 6.31871 6.49050 6.95355 7.55720 9.02590 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023586 B = 0.004110 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.847204 B = 6811.658696 C = 7392.496352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.051 3.949 3 C -0.125 4.125 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.023 3.977 7 N -0.904 5.904 8 Si 0.945 3.055 9 H -0.291 1.291 10 H -0.271 1.271 11 H -0.278 1.278 12 C 0.133 3.867 13 N -1.113 6.113 14 S 2.607 3.393 15 O -0.996 6.996 16 O -0.990 6.990 17 C -0.599 4.599 18 C -0.120 4.120 19 H 0.102 0.898 20 C -0.137 4.137 21 C 0.034 3.966 22 O -0.397 6.397 23 C 0.025 3.975 24 H 0.055 0.945 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.015 0.985 28 H 0.026 0.974 29 H 0.057 0.943 30 H 0.257 0.743 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.416 0.584 34 H 0.157 0.843 35 H 0.169 0.831 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.103 -10.388 -14.982 18.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.049 3.951 3 C -0.183 4.183 4 C -0.562 4.562 5 H 0.076 0.924 6 C -0.176 4.176 7 N -0.543 5.543 8 Si 0.772 3.228 9 H -0.217 1.217 10 H -0.196 1.196 11 H -0.204 1.204 12 C 0.007 3.993 13 N -0.873 5.873 14 S 2.704 3.296 15 O -0.986 6.986 16 O -0.980 6.980 17 C -0.732 4.732 18 C -0.141 4.141 19 H 0.120 0.880 20 C -0.176 4.176 21 C -0.043 4.043 22 O -0.317 6.317 23 C -0.051 4.051 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.252 0.748 34 H 0.175 0.825 35 H 0.187 0.813 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.358 -9.744 -15.503 18.314 hybrid contribution -0.344 -0.275 1.574 1.635 sum -0.702 -10.019 -13.928 17.172 Atomic orbital electron populations 1.21686 0.97212 0.99300 0.99943 1.18316 0.93281 0.92374 0.91114 1.21713 0.97768 0.99150 0.99701 1.21353 1.31380 1.12274 0.91225 0.92415 1.25524 0.95284 0.95581 1.01244 1.69949 1.37395 1.23598 1.23384 0.85825 0.78518 0.78985 0.79498 1.21704 1.19586 1.20388 1.21420 0.97961 0.95621 0.84271 1.55404 1.52933 1.56298 1.22700 1.04807 0.73773 0.78543 0.72522 1.93538 1.75179 1.65204 1.64728 1.93556 1.33234 1.86455 1.84773 1.30435 1.14035 1.22927 1.05786 1.22573 0.95494 1.01124 0.94863 0.87974 1.23025 0.98892 0.92228 1.03436 1.23462 0.87503 0.90344 1.02961 1.88869 1.52325 1.36624 1.53872 1.24047 0.93778 0.94685 0.92613 0.92649 0.94854 0.94800 0.96569 0.95461 0.92380 0.93371 0.92368 0.90597 0.74772 0.82496 0.81264 0.88283 0.87999 0.91140 0.88112 0.89110 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 2 C 0.05 2.24 0.51 -52.93 -0.03 2.21 16 3 C -0.13 -5.81 8.08 71.98 0.58 -5.23 16 4 C -0.52 -25.94 8.01 25.60 0.21 -25.73 16 5 H 0.06 2.77 7.74 -2.91 -0.02 2.75 16 6 C 0.02 1.18 5.15 84.66 0.44 1.61 16 7 N -0.90 -48.16 9.35 21.45 0.20 -47.96 16 8 Si 0.94 41.15 29.54 68.60 2.03 43.18 16 9 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 12 C 0.13 4.68 4.96 86.38 0.43 5.10 16 13 N -1.11 -33.83 5.22 -187.49 -0.98 -34.81 16 14 S 2.61 71.66 5.29 -56.49 -0.30 71.37 16 15 O -1.00 -32.52 18.08 -127.65 -2.31 -34.83 16 16 O -0.99 -34.00 16.35 -127.65 -2.09 -36.09 16 17 C -0.60 -10.17 5.45 71.98 0.39 -9.78 16 18 C -0.12 -2.10 3.12 -9.49 -0.03 -2.13 16 19 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 20 C -0.14 -1.69 6.60 31.58 0.21 -1.48 16 21 C 0.03 0.50 7.70 72.35 0.56 1.05 16 22 O -0.40 -9.07 11.52 -148.98 -1.72 -10.79 16 23 C 0.03 0.56 6.24 72.66 0.45 1.01 16 24 H 0.05 2.69 6.07 -2.39 -0.01 2.67 16 25 H 0.03 1.20 6.60 -2.38 -0.02 1.18 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.03 1.12 7.19 -2.39 -0.02 1.10 16 29 H 0.06 2.99 6.07 -2.39 -0.01 2.97 16 30 H 0.26 13.33 8.31 -92.70 -0.77 12.56 16 31 H 0.06 2.15 7.70 -2.39 -0.02 2.14 16 32 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.42 12.59 6.44 -96.74 -0.62 11.96 16 34 H 0.16 2.18 8.05 -2.39 -0.02 2.16 16 35 H 0.17 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.10 0.95 7.86 -2.38 -0.02 0.93 16 37 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.09 2.18 7.72 -2.39 -0.02 2.16 16 41 H 0.08 1.63 7.98 -2.39 -0.02 1.62 16 Total: -1.00 -65.98 333.43 -0.98 -66.96 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.39 Total: 20.95 kcal Atomic # 6 Polarization: -41.76 SS G_CDS: 3.79 Total: -37.98 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -0.78 Total: -82.76 kcal Atomic # 8 Polarization: -75.60 SS G_CDS: -6.11 Total: -81.71 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: 71.66 SS G_CDS: -0.30 Total: 71.37 kcal Total: -65.98 -0.98 -66.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309569004.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.843 kcal (2) G-P(sol) polarization free energy of solvation -65.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds