Wall clock time and date at job start Tue Mar 31 2020 06:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47392 * 2 1 4 4 C 1.53000 * 109.47153 * 239.99765 * 2 1 3 5 5 C 1.50702 * 109.47183 * 120.00247 * 2 1 3 6 6 O 1.20787 * 119.99800 * 359.97438 * 5 2 1 7 7 C 1.48896 * 120.00017 * 179.97438 * 5 2 1 8 8 O 1.21417 * 119.99886 * 359.97438 * 7 5 2 9 9 N 1.34777 * 119.99578 * 179.97438 * 7 5 2 10 10 C 1.39661 * 119.99741 * 175.50138 * 9 7 5 11 11 C 1.39030 * 120.01016 * 215.14547 * 10 9 7 12 12 C 1.37945 * 119.98910 * 180.02562 * 11 10 9 13 13 C 1.38949 * 120.01503 * 0.02562 * 12 11 10 14 14 O 1.35742 * 119.99527 * 179.97438 * 13 12 11 15 15 C 1.34785 * 116.99779 * 5.34367 * 14 13 12 16 16 H 1.07993 * 120.00158 * 354.96801 * 15 14 13 17 17 C 1.38689 * 119.99889 * 174.96084 * 15 14 13 18 18 N 1.31532 * 120.00014 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99954 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47428 * 89.99416 * 19 17 15 21 21 H 1.48504 * 109.47229 * 209.99732 * 19 17 15 22 22 H 1.48503 * 109.47303 * 329.99702 * 19 17 15 23 23 C 1.38952 * 120.01475 * 0.25318 * 13 12 11 24 24 C 1.37952 * 120.00862 * 359.48618 * 23 13 12 25 25 H 1.09001 * 109.47171 * 299.99719 * 1 2 3 26 26 H 1.09000 * 109.46989 * 59.99851 * 1 2 3 27 27 H 1.09005 * 109.47360 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47422 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47175 * 300.00035 * 3 2 1 30 30 H 1.09000 * 109.47248 * 60.00114 * 3 2 1 31 31 H 1.08996 * 109.47333 * 300.00210 * 4 2 1 32 32 H 1.09007 * 109.46547 * 60.00140 * 4 2 1 33 33 H 1.08998 * 109.47360 * 180.02562 * 4 2 1 34 34 H 0.97005 * 120.00582 * 355.49868 * 9 7 5 35 35 H 1.07996 * 120.00119 * 0.02562 * 11 10 9 36 36 H 1.08011 * 119.99036 * 179.97438 * 12 11 10 37 37 H 0.97006 * 120.00218 * 180.02562 * 18 17 15 38 38 H 1.07994 * 119.99655 * 179.74977 * 23 13 12 39 39 H 1.07998 * 120.00897 * 180.25624 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 8 1.2474 -1.1691 2.0257 7 6 3.4962 -0.8470 1.4658 8 8 4.2852 -0.3863 0.6661 9 7 3.9454 -1.4820 2.5665 10 6 5.3149 -1.6929 2.7409 11 6 5.7667 -2.8551 3.3557 12 6 7.1195 -3.0627 3.5283 13 6 8.0306 -2.1103 3.0883 14 8 9.3616 -2.3148 3.2587 15 6 9.7381 -3.5080 3.7599 16 1 8.9912 -4.2184 4.0819 17 6 11.0848 -3.8236 3.8619 18 7 11.4522 -4.9882 4.3505 19 14 12.3768 -2.5946 3.3054 20 1 12.7504 -1.7189 4.4451 21 1 13.5789 -3.3229 2.8259 22 1 11.8283 -1.7647 2.2028 23 6 7.5792 -0.9459 2.4790 24 6 6.2268 -0.7399 2.3012 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 3.3175 -1.7925 3.2376 35 1 5.0587 -3.5952 3.6981 36 1 7.4705 -3.9655 4.0062 37 1 12.3941 -5.2088 4.4222 38 1 8.2874 -0.2041 2.1408 39 1 5.8761 0.1632 1.8239 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318497154.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:34 Heat of formation + Delta-G solvation = -69.828610 kcal Electronic energy + Delta-G solvation = -22567.690626 eV Core-core repulsion = 19055.673576 eV Total energy + Delta-G solvation = -3512.017051 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18896 -39.54359 -38.60370 -36.89818 -36.05203 -34.05563 -32.39074 -30.39747 -28.73378 -27.62032 -27.57941 -26.04722 -25.06934 -22.51219 -22.19247 -20.62625 -19.36415 -18.06331 -17.65977 -17.44318 -16.77245 -15.96824 -15.86261 -15.08775 -14.83797 -14.63744 -14.02950 -13.90388 -13.89326 -13.82481 -13.27294 -12.88545 -12.76956 -12.50615 -12.49290 -12.38526 -12.33724 -12.00638 -11.93316 -11.68676 -11.53992 -11.27614 -11.03466 -10.96110 -10.75691 -10.25078 -9.81218 -9.50018 -9.28137 -8.83879 -8.38024 -7.16372 -6.47218 -4.12885 0.72957 1.99006 2.05926 2.64712 2.95162 3.20813 3.23131 3.38072 3.98934 4.19803 4.30104 4.41473 4.54263 4.55356 4.80283 4.97932 5.05898 5.26988 5.34258 5.41722 5.48403 5.52974 5.59365 5.60920 5.65368 5.79426 5.89404 5.99478 6.00778 6.01706 6.11427 6.55318 6.57418 6.66702 6.86230 6.97006 7.14900 7.44442 7.48561 7.71683 7.93168 8.01744 8.87575 9.49132 10.60048 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.038363 B = 0.003040 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.687328 B = 9207.420577 C = 9597.110666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.145 4.145 5 C 0.364 3.636 6 O -0.421 6.421 7 C 0.465 3.535 8 O -0.493 6.493 9 N -0.632 5.632 10 C 0.030 3.970 11 C -0.084 4.084 12 C -0.207 4.207 13 C 0.156 3.844 14 O -0.212 6.212 15 C -0.391 4.391 16 H 0.107 0.893 17 C 0.064 3.936 18 N -0.877 5.877 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.258 1.258 23 C -0.179 4.179 24 C -0.066 4.066 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.411 0.589 35 H 0.115 0.885 36 H 0.139 0.861 37 H 0.280 0.720 38 H 0.122 0.878 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.937 9.575 -7.319 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.096 4.096 3 C -0.201 4.201 4 C -0.202 4.202 5 C 0.233 3.767 6 O -0.291 6.291 7 C 0.249 3.751 8 O -0.368 6.368 9 N -0.278 5.278 10 C -0.062 4.062 11 C -0.104 4.104 12 C -0.227 4.227 13 C 0.103 3.897 14 O -0.117 6.117 15 C -0.466 4.466 16 H 0.125 0.875 17 C -0.139 4.139 18 N -0.514 5.514 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.182 1.182 23 C -0.199 4.199 24 C -0.086 4.086 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.247 0.753 35 H 0.133 0.867 36 H 0.157 0.843 37 H 0.091 0.909 38 H 0.140 0.860 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.439 9.627 -7.451 22.096 hybrid contribution 0.284 -0.042 0.293 0.410 sum -18.156 9.585 -7.158 21.743 Atomic orbital electron populations 1.21786 0.92214 1.02810 1.02504 1.20950 0.97281 0.97482 0.93861 1.21917 1.03466 0.92288 1.02459 1.21925 1.03552 0.99661 0.95064 1.24943 0.88496 0.76271 0.86953 1.90404 1.58686 1.36079 1.43909 1.20880 0.90735 0.81112 0.82365 1.90723 1.56475 1.45167 1.44444 1.43107 1.07278 1.55971 1.21474 1.17325 0.81427 0.97205 1.10236 1.20580 0.95556 0.94504 0.99809 1.21102 0.91941 1.02179 1.07454 1.19194 0.84035 0.93512 0.92928 1.83566 1.18504 1.36632 1.72989 1.20782 0.94106 0.91010 1.40746 0.87540 1.24484 0.97086 0.96495 0.95884 1.69633 1.18192 1.20467 1.43115 0.86174 0.79845 0.80758 0.80123 1.19815 1.20759 1.18225 1.20134 0.94991 0.98187 1.06600 1.20730 0.91491 0.97925 0.98427 0.92007 0.91431 0.91984 0.89960 0.91149 0.92554 0.92535 0.91163 0.89897 0.75290 0.86685 0.84323 0.90939 0.85952 0.85040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 7.76 37.16 0.29 -0.75 16 2 C -0.09 -0.85 0.76 -155.67 -0.12 -0.97 16 3 C -0.14 -1.20 8.29 37.15 0.31 -0.89 16 4 C -0.14 -1.26 8.29 37.16 0.31 -0.96 16 5 C 0.36 4.12 6.02 -29.89 -0.18 3.94 16 6 O -0.42 -5.18 16.09 5.98 0.10 -5.08 16 7 C 0.47 6.27 7.38 -11.85 -0.09 6.18 16 8 O -0.49 -7.51 10.81 5.44 0.06 -7.45 16 9 N -0.63 -8.72 5.31 -10.40 -0.06 -8.78 16 10 C 0.03 0.51 6.30 -83.70 -0.53 -0.01 16 11 C -0.08 -1.47 9.96 -39.40 -0.39 -1.86 16 12 C -0.21 -4.30 9.16 -39.43 -0.36 -4.66 16 13 C 0.16 3.53 6.65 -39.05 -0.26 3.27 16 14 O -0.21 -5.49 8.58 0.20 0.00 -5.48 16 15 C -0.39 -10.78 9.94 30.90 0.31 -10.47 16 16 H 0.11 2.97 5.43 -52.49 -0.28 2.69 16 17 C 0.06 1.77 5.49 -17.51 -0.10 1.68 16 18 N -0.88 -24.92 13.96 55.48 0.77 -24.14 16 19 Si 0.91 21.34 28.62 -169.99 -4.86 16.48 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.26 -6.12 7.11 56.52 0.40 -5.71 16 23 C -0.18 -3.56 9.98 -39.42 -0.39 -3.95 16 24 C -0.07 -1.18 8.69 -39.39 -0.34 -1.52 16 25 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 28 H 0.08 0.82 6.43 -51.93 -0.33 0.48 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.08 0.88 6.42 -51.93 -0.33 0.54 16 34 H 0.41 4.75 8.29 -40.82 -0.34 4.41 16 35 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.14 2.99 5.63 -52.48 -0.30 2.70 16 37 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 39 H 0.13 2.22 6.23 -52.49 -0.33 1.90 16 LS Contribution 329.13 15.07 4.96 4.96 Total: -1.00 -29.58 329.13 -5.42 -35.00 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -4.85 Total: 5.49 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -1.55 Total: -10.99 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.72 Total: -32.92 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.16 Total: -18.02 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.86 Total: 16.48 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.58 -5.42 -35.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318497154.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.830 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds