Wall clock time and date at job start Tue Mar 31 2020 06:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47392 * 2 1 4 4 C 1.53000 * 109.47153 * 239.99765 * 2 1 3 5 5 C 1.50702 * 109.47183 * 120.00247 * 2 1 3 6 6 O 1.20787 * 119.99800 * 359.97438 * 5 2 1 7 7 C 1.48896 * 120.00017 * 179.97438 * 5 2 1 8 8 O 1.21417 * 119.99886 * 359.97438 * 7 5 2 9 9 N 1.34777 * 119.99578 * 179.97438 * 7 5 2 10 10 C 1.39661 * 119.99741 * 175.50138 * 9 7 5 11 11 C 1.39030 * 120.01016 * 215.14547 * 10 9 7 12 12 C 1.37945 * 119.98910 * 180.02562 * 11 10 9 13 13 C 1.38949 * 120.01503 * 0.02562 * 12 11 10 14 14 O 1.35742 * 119.99527 * 179.97438 * 13 12 11 15 15 C 1.34785 * 116.99779 * 5.34367 * 14 13 12 16 16 H 1.07993 * 120.00158 * 354.96801 * 15 14 13 17 17 C 1.38689 * 119.99889 * 174.96084 * 15 14 13 18 18 N 1.31532 * 120.00014 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99954 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47428 * 89.99416 * 19 17 15 21 21 H 1.48504 * 109.47229 * 209.99732 * 19 17 15 22 22 H 1.48503 * 109.47303 * 329.99702 * 19 17 15 23 23 C 1.38952 * 120.01475 * 0.25318 * 13 12 11 24 24 C 1.37952 * 120.00862 * 359.48618 * 23 13 12 25 25 H 1.09001 * 109.47171 * 299.99719 * 1 2 3 26 26 H 1.09000 * 109.46989 * 59.99851 * 1 2 3 27 27 H 1.09005 * 109.47360 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47422 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47175 * 300.00035 * 3 2 1 30 30 H 1.09000 * 109.47248 * 60.00114 * 3 2 1 31 31 H 1.08996 * 109.47333 * 300.00210 * 4 2 1 32 32 H 1.09007 * 109.46547 * 60.00140 * 4 2 1 33 33 H 1.08998 * 109.47360 * 180.02562 * 4 2 1 34 34 H 0.97005 * 120.00582 * 355.49868 * 9 7 5 35 35 H 1.07996 * 120.00119 * 0.02562 * 11 10 9 36 36 H 1.08011 * 119.99036 * 179.97438 * 12 11 10 37 37 H 0.97006 * 120.00218 * 180.02562 * 18 17 15 38 38 H 1.07994 * 119.99655 * 179.74977 * 23 13 12 39 39 H 1.07998 * 120.00897 * 180.25624 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 8 1.2474 -1.1691 2.0257 7 6 3.4962 -0.8470 1.4658 8 8 4.2852 -0.3863 0.6661 9 7 3.9454 -1.4820 2.5665 10 6 5.3149 -1.6929 2.7409 11 6 5.7667 -2.8551 3.3557 12 6 7.1195 -3.0627 3.5283 13 6 8.0306 -2.1103 3.0883 14 8 9.3616 -2.3148 3.2587 15 6 9.7381 -3.5080 3.7599 16 1 8.9912 -4.2184 4.0819 17 6 11.0848 -3.8236 3.8619 18 7 11.4522 -4.9882 4.3505 19 14 12.3768 -2.5946 3.3054 20 1 12.7504 -1.7189 4.4451 21 1 13.5789 -3.3229 2.8259 22 1 11.8283 -1.7647 2.2028 23 6 7.5792 -0.9459 2.4790 24 6 6.2268 -0.7399 2.3012 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 3.3175 -1.7925 3.2376 35 1 5.0587 -3.5952 3.6981 36 1 7.4705 -3.9655 4.0062 37 1 12.3941 -5.2088 4.4222 38 1 8.2874 -0.2041 2.1408 39 1 5.8761 0.1632 1.8239 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318497154.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:33 Heat of formation + Delta-G solvation = -87.852801 kcal Electronic energy + Delta-G solvation = -22568.472214 eV Core-core repulsion = 19055.673576 eV Total energy + Delta-G solvation = -3512.798638 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.26382 -40.98566 -39.96981 -38.32994 -36.96002 -35.39053 -34.37712 -31.96713 -30.18584 -28.34902 -28.23707 -27.48110 -26.55247 -24.04901 -23.46640 -21.98293 -20.47652 -19.78830 -19.19742 -18.66412 -18.16195 -16.95765 -16.89468 -16.60582 -16.15908 -15.79028 -15.69402 -15.58277 -15.23233 -14.71084 -14.49801 -14.31199 -14.20037 -13.98133 -13.56260 -13.51355 -13.34434 -13.07442 -13.04032 -12.80431 -12.63416 -12.55583 -12.37699 -12.00759 -11.93255 -11.74588 -11.49949 -11.14893 -10.72870 -10.41851 -9.92040 -8.77138 -8.50337 -6.21841 -0.29469 0.45546 0.52912 1.33131 1.36457 1.52704 1.56074 1.84081 2.28420 2.72605 2.97392 2.99731 3.14681 3.46570 3.84216 3.87943 3.97601 4.06034 4.26712 4.41234 4.49151 4.61395 4.68883 4.74254 4.86044 4.93751 4.94328 4.98587 5.02510 5.10975 5.21269 5.22426 5.33905 5.34383 5.44127 5.48837 5.69610 5.74442 5.86526 6.13344 6.27169 6.82305 6.83937 7.56775 8.60819 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.038363 B = 0.003040 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.687328 B = 9207.420577 C = 9597.110666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 C -0.142 4.142 4 C -0.143 4.143 5 C 0.372 3.628 6 O -0.428 6.428 7 C 0.466 3.534 8 O -0.506 6.506 9 N -0.632 5.632 10 C 0.058 3.942 11 C -0.081 4.081 12 C -0.215 4.215 13 C 0.120 3.880 14 O -0.240 6.240 15 C -0.400 4.400 16 H 0.086 0.914 17 C 0.012 3.988 18 N -0.921 5.921 19 Si 0.968 3.032 20 H -0.265 1.265 21 H -0.269 1.269 22 H -0.263 1.263 23 C -0.174 4.174 24 C -0.068 4.068 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.425 0.575 35 H 0.149 0.851 36 H 0.122 0.878 37 H 0.285 0.715 38 H 0.133 0.867 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.543 11.442 -8.675 25.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.093 4.093 3 C -0.200 4.200 4 C -0.201 4.201 5 C 0.242 3.758 6 O -0.298 6.298 7 C 0.250 3.750 8 O -0.382 6.382 9 N -0.279 5.279 10 C -0.035 4.035 11 C -0.101 4.101 12 C -0.235 4.235 13 C 0.070 3.930 14 O -0.147 6.147 15 C -0.476 4.476 16 H 0.104 0.896 17 C -0.187 4.187 18 N -0.561 5.561 19 Si 0.790 3.210 20 H -0.190 1.190 21 H -0.194 1.194 22 H -0.187 1.187 23 C -0.194 4.194 24 C -0.088 4.088 25 H 0.079 0.921 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.263 0.737 35 H 0.167 0.833 36 H 0.140 0.860 37 H 0.095 0.905 38 H 0.151 0.849 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -21.115 11.512 -8.811 25.612 hybrid contribution 0.680 -0.517 0.627 1.059 sum -20.435 10.995 -8.184 24.606 Atomic orbital electron populations 1.21793 0.90714 1.02921 1.03573 1.21043 0.98324 0.97531 0.92444 1.21921 1.02279 0.91939 1.03823 1.21925 1.02183 1.00129 0.95822 1.25050 0.86855 0.76216 0.87698 1.90416 1.58345 1.36583 1.44444 1.21447 0.91926 0.79938 0.81654 1.90727 1.57249 1.45385 1.44830 1.43123 1.06057 1.56347 1.22402 1.17440 0.82983 0.95998 1.07109 1.20819 0.94639 0.95405 0.99205 1.21131 0.93376 1.01429 1.07544 1.19655 0.83430 0.95167 0.94770 1.83514 1.20207 1.35818 1.75181 1.20743 0.94153 0.91636 1.41084 0.89640 1.25255 0.98951 0.98246 0.96218 1.69711 1.18852 1.22186 1.45374 0.85252 0.77564 0.78559 0.79609 1.19015 1.19365 1.18683 1.20351 0.96154 0.97341 1.05564 1.20943 0.90830 0.98712 0.98317 0.92149 0.89218 0.92368 0.91756 0.89017 0.92076 0.92415 0.88947 0.91953 0.73670 0.83311 0.86013 0.90531 0.84872 0.83522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 7.76 71.98 0.56 -1.02 16 2 C -0.09 -1.39 0.76 -52.93 -0.04 -1.43 16 3 C -0.14 -1.94 8.29 71.98 0.60 -1.34 16 4 C -0.14 -2.11 8.29 71.98 0.60 -1.51 16 5 C 0.37 7.43 6.02 28.55 0.17 7.60 16 6 O -0.43 -9.33 16.09 -1.53 -0.02 -9.36 16 7 C 0.47 11.38 7.38 87.10 0.64 12.02 16 8 O -0.51 -14.31 10.81 -3.46 -0.04 -14.35 16 9 N -0.63 -15.67 5.31 -305.14 -1.62 -17.30 16 10 C 0.06 1.83 6.30 38.27 0.24 2.07 16 11 C -0.08 -2.69 9.96 22.39 0.22 -2.47 16 12 C -0.22 -9.08 9.16 22.37 0.20 -8.88 16 13 C 0.12 5.51 6.65 22.61 0.15 5.66 16 14 O -0.24 -12.83 8.58 -22.20 -0.19 -13.02 16 15 C -0.40 -23.11 9.94 67.93 0.68 -22.43 16 16 H 0.09 5.11 5.43 -2.91 -0.02 5.09 16 17 C 0.01 0.69 5.49 84.85 0.47 1.16 16 18 N -0.92 -54.32 13.96 21.62 0.30 -54.02 16 19 Si 0.97 44.98 28.62 68.60 1.96 46.94 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 23 C -0.17 -6.83 9.98 22.37 0.22 -6.61 16 24 C -0.07 -2.32 8.69 22.39 0.19 -2.13 16 25 H 0.06 0.75 8.10 -2.39 -0.02 0.73 16 26 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.75 8.10 -2.38 -0.02 0.73 16 28 H 0.06 1.13 6.43 -2.39 -0.02 1.12 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.06 1.20 6.42 -2.39 -0.02 1.18 16 34 H 0.42 8.49 8.29 -92.70 -0.77 7.72 16 35 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 36 H 0.12 5.55 5.63 -2.90 -0.02 5.53 16 37 H 0.29 15.44 8.31 -92.70 -0.77 14.66 16 38 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 39 H 0.15 4.61 6.23 -2.91 -0.02 4.59 16 Total: -1.00 -65.62 329.13 5.61 -60.00 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.32 Total: 20.42 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 4.91 Total: -19.32 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -1.32 Total: -71.31 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.25 Total: -36.73 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.96 Total: 46.94 kcal Total: -65.62 5.61 -60.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318497154.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.851 kcal (2) G-P(sol) polarization free energy of solvation -65.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds