Wall clock time and date at job start Tue Mar 31 2020 06:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 112.99975 * 2 1 4 4 O 1.21287 * 120.00000 * 227.89994 * 3 2 1 5 5 N 1.34772 * 120.00458 * 48.16973 * 3 2 1 6 6 C 1.46498 * 120.00358 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47116 * 180.02562 * 6 5 3 8 8 C 1.38327 * 119.96505 * 269.72550 * 7 6 5 9 9 C 1.38281 * 120.13691 * 179.76884 * 8 7 6 10 10 C 1.38126 * 120.06871 * 0.50602 * 9 8 7 11 11 C 1.38858 * 119.92913 * 359.75323 * 10 9 8 12 12 O 1.35748 * 120.06738 * 179.97438 * 11 10 9 13 13 C 1.34830 * 116.99889 * 354.48321 * 12 11 10 14 14 H 1.08004 * 120.00310 * 5.06212 * 13 12 11 15 15 C 1.38662 * 119.99905 * 185.05643 * 13 12 11 16 16 N 1.31557 * 119.99783 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00006 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47367 * 89.99692 * 17 15 13 19 19 H 1.48498 * 109.46849 * 210.00194 * 17 15 13 20 20 H 1.48504 * 109.46999 * 329.99927 * 17 15 13 21 21 C 1.38080 * 119.96583 * 90.00530 * 7 6 5 22 22 C 1.54034 * 113.92712 * 131.92963 * 2 1 3 23 23 O 1.44182 * 85.51692 * 91.65967 * 22 2 1 24 24 C 1.44175 * 93.33800 * 24.19352 * 23 22 2 25 25 H 1.09003 * 109.47131 * 69.66932 * 1 2 3 26 26 H 1.08997 * 109.47427 * 189.67183 * 1 2 3 27 27 H 1.09005 * 109.47273 * 309.66691 * 1 2 3 28 28 H 0.97002 * 119.99460 * 0.02562 * 5 3 2 29 29 H 1.08995 * 109.47550 * 300.00644 * 6 5 3 30 30 H 1.09006 * 109.46748 * 60.00694 * 6 5 3 31 31 H 1.07998 * 119.93041 * 0.02562 * 8 7 6 32 32 H 1.08004 * 119.96498 * 180.26136 * 9 8 7 33 33 H 1.07997 * 120.03145 * 179.76473 * 10 9 8 34 34 H 0.96995 * 119.99559 * 179.97438 * 16 15 13 35 35 H 1.08001 * 120.03416 * 359.95169 * 21 7 6 36 36 H 1.09002 * 113.86560 * 205.80720 * 22 2 1 37 37 H 1.08998 * 113.86695 * 337.51504 * 22 2 1 38 38 H 1.09000 * 113.86434 * 221.65741 * 24 23 22 39 39 H 1.09000 * 113.97987 * 89.97072 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1188 1.3872 0.0000 4 8 3.0040 1.6703 -0.7794 5 7 1.6656 2.3117 0.8696 6 6 2.2384 3.6600 0.8700 7 6 1.5628 4.4926 1.9290 8 6 0.4344 5.2281 1.6141 9 6 -0.1911 5.9895 2.5842 10 6 0.3155 6.0259 3.8687 11 6 1.4511 5.2928 4.1866 12 8 1.9517 5.3270 5.4480 13 6 1.3688 6.1794 6.3150 14 1 0.4917 6.7354 6.0185 15 6 1.8954 6.3420 7.5873 16 7 2.9641 5.6650 7.9484 17 14 1.0875 7.5224 8.7887 18 1 0.0579 6.7988 9.5771 19 1 2.1157 8.0753 9.7065 20 1 0.4466 8.6316 8.0375 21 6 2.0741 4.5249 3.2112 22 6 2.1547 -0.9408 1.0475 23 8 2.1470 -1.9296 -0.0018 24 6 2.1520 -0.9398 -1.0500 25 1 -0.3633 0.3571 -0.9637 26 1 -0.3634 -1.0130 0.1726 27 1 -0.3634 0.6560 0.7911 28 1 0.9606 2.0840 1.4958 29 1 3.3062 3.6012 1.0809 30 1 2.0857 4.1199 -0.1064 31 1 0.0388 5.2044 0.6095 32 1 -1.0744 6.5594 2.3363 33 1 -0.1714 6.6237 4.6250 34 1 3.3327 5.7791 8.8383 35 1 2.9573 3.9533 3.4556 36 1 3.1538 -0.6441 1.3666 37 1 1.4917 -1.1762 1.8800 38 1 1.4868 -1.1742 -1.8811 39 1 3.1494 -0.6416 -1.3731 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320853918.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:53 Heat of formation + Delta-G solvation = -53.406493 kcal Electronic energy + Delta-G solvation = -22381.663554 eV Core-core repulsion = 18870.358619 eV Total energy + Delta-G solvation = -3511.304934 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.36645 -39.36924 -38.69268 -36.84036 -34.65262 -32.59957 -32.34841 -30.63097 -29.17995 -26.91913 -26.66640 -26.08764 -25.18804 -22.27953 -21.74450 -20.88170 -19.41052 -18.08619 -17.53415 -17.00644 -16.45450 -16.35220 -15.72311 -15.33188 -15.05481 -14.76125 -14.46652 -14.38852 -13.82784 -13.67429 -13.54403 -12.96504 -12.83003 -12.69829 -12.48602 -12.36963 -12.19456 -11.72868 -11.56355 -11.43703 -11.15005 -10.97416 -10.88210 -10.76039 -10.51476 -10.10714 -9.70087 -9.46138 -9.09695 -8.93552 -8.30338 -7.38737 -6.53554 -4.13267 1.83245 2.20830 2.42897 3.06186 3.08248 3.13089 3.23049 3.35601 3.81885 3.88751 4.39903 4.47742 4.63968 4.76462 4.88167 5.01980 5.10929 5.18136 5.20628 5.35561 5.37968 5.47072 5.49525 5.67194 5.70904 5.76922 5.79518 5.83508 5.86173 6.01870 6.19027 6.36685 6.49364 6.75481 6.93984 7.12037 7.21503 7.30139 7.44233 7.65304 7.90381 8.10194 8.91749 9.59638 10.64089 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023856 B = 0.003094 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.411902 B = 9046.980685 C = 9600.046446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.158 4.158 3 C 0.520 3.480 4 O -0.542 6.542 5 N -0.714 5.714 6 C 0.166 3.834 7 C -0.074 4.074 8 C -0.196 4.196 9 C -0.076 4.076 10 C -0.225 4.225 11 C 0.151 3.849 12 O -0.176 6.176 13 C -0.394 4.394 14 H 0.093 0.907 15 C 0.040 3.960 16 N -0.860 5.860 17 Si 0.941 3.059 18 H -0.273 1.273 19 H -0.277 1.277 20 H -0.267 1.267 21 C -0.171 4.171 22 C 0.057 3.943 23 O -0.377 6.377 24 C 0.062 3.938 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.404 0.596 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.271 0.729 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.044 -8.027 -12.783 16.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.306 3.694 4 O -0.419 6.419 5 N -0.365 5.365 6 C 0.044 3.956 7 C -0.075 4.075 8 C -0.215 4.215 9 C -0.094 4.094 10 C -0.245 4.245 11 C 0.097 3.903 12 O -0.079 6.079 13 C -0.470 4.470 14 H 0.110 0.890 15 C -0.164 4.164 16 N -0.495 5.495 17 Si 0.766 3.234 18 H -0.198 1.198 19 H -0.202 1.202 20 H -0.192 1.192 21 C -0.191 4.191 22 C -0.020 4.020 23 O -0.295 6.295 24 C -0.015 4.015 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.239 0.761 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.146 0.854 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.055 -8.231 -13.011 16.205 hybrid contribution -0.819 0.907 1.011 1.586 sum -5.874 -7.324 -12.001 15.237 Atomic orbital electron populations 1.21599 0.90105 1.03597 1.03242 1.24089 0.99164 0.93291 0.99640 1.20354 0.82620 0.85987 0.80459 1.90699 1.30745 1.80565 1.39919 1.46180 1.40677 1.11881 1.37797 1.20190 0.97382 0.80484 0.97591 1.19251 0.96366 0.98624 0.93228 1.20472 0.98637 1.03474 0.98928 1.20751 0.98374 0.97439 0.92816 1.21250 0.99621 1.06014 0.97607 1.19317 0.91724 0.93163 0.86135 1.83980 1.53640 1.55291 1.14971 1.21331 1.11884 1.20943 0.92889 0.89011 1.25304 0.96070 0.97939 0.97115 1.70033 1.20237 1.38996 1.20188 0.85706 0.78618 0.79494 0.79594 1.19819 1.20181 1.19158 1.20083 1.02611 1.04996 0.91438 1.23985 1.00960 0.85222 0.91863 1.89693 1.95796 1.27264 1.16792 1.23975 1.01618 0.84374 0.91492 0.91210 0.90587 0.91225 0.76117 0.90773 0.90849 0.87524 0.87259 0.85434 0.91899 0.86406 0.89503 0.88034 0.88642 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 9.05 37.16 0.34 -0.64 16 2 C -0.16 -1.55 1.31 -154.58 -0.20 -1.76 16 3 C 0.52 6.57 6.95 -10.99 -0.08 6.49 16 4 O -0.54 -8.67 15.89 5.55 0.09 -8.59 16 5 N -0.71 -8.70 5.44 -61.47 -0.33 -9.04 16 6 C 0.17 2.32 5.80 -5.19 -0.03 2.29 16 7 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 8 C -0.20 -3.06 9.70 -39.53 -0.38 -3.45 16 9 C -0.08 -1.27 10.04 -39.61 -0.40 -1.67 16 10 C -0.23 -4.58 9.17 -39.39 -0.36 -4.94 16 11 C 0.15 3.42 6.65 -39.11 -0.26 3.16 16 12 O -0.18 -4.81 9.76 0.05 0.00 -4.80 16 13 C -0.39 -10.62 9.49 30.89 0.29 -10.33 16 14 H 0.09 2.27 5.20 -52.48 -0.27 2.00 16 15 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 16 N -0.86 -24.56 13.67 55.48 0.76 -23.81 16 17 Si 0.94 19.87 29.55 -169.99 -5.02 14.85 16 18 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 19 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 21 C -0.17 -3.35 9.65 -39.39 -0.38 -3.73 16 22 C 0.06 0.55 8.32 37.61 0.31 0.86 16 23 O -0.38 -4.27 12.38 -35.23 -0.44 -4.71 16 24 C 0.06 0.62 8.15 37.61 0.31 0.93 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.53 8.06 -51.93 -0.42 0.11 16 27 H 0.07 0.49 7.03 -51.93 -0.36 0.12 16 28 H 0.40 4.36 7.35 -40.82 -0.30 4.06 16 29 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 30 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 31 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 33 H 0.13 2.61 5.64 -52.49 -0.30 2.31 16 34 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 36 H 0.09 0.87 8.09 -51.93 -0.42 0.44 16 37 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 38 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 39 H 0.10 1.05 7.39 -51.93 -0.38 0.67 16 LS Contribution 334.78 15.07 5.05 5.05 Total: -1.00 -31.28 334.78 -6.35 -37.63 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.96 Total: 6.95 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -1.49 Total: -13.53 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.42 Total: -32.84 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.35 Total: -18.10 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.28 -6.35 -37.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320853918.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.772 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds