Wall clock time and date at job start Tue Mar 31 2020 06:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 112.99975 * 2 1 4 4 O 1.21287 * 120.00000 * 227.89994 * 3 2 1 5 5 N 1.34772 * 120.00458 * 48.16973 * 3 2 1 6 6 C 1.46498 * 120.00358 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47116 * 180.02562 * 6 5 3 8 8 C 1.38327 * 119.96505 * 269.72550 * 7 6 5 9 9 C 1.38281 * 120.13691 * 179.76884 * 8 7 6 10 10 C 1.38126 * 120.06871 * 0.50602 * 9 8 7 11 11 C 1.38858 * 119.92913 * 359.75323 * 10 9 8 12 12 O 1.35748 * 120.06738 * 179.97438 * 11 10 9 13 13 C 1.34830 * 116.99889 * 354.48321 * 12 11 10 14 14 H 1.08004 * 120.00310 * 5.06212 * 13 12 11 15 15 C 1.38662 * 119.99905 * 185.05643 * 13 12 11 16 16 N 1.31557 * 119.99783 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00006 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47367 * 89.99692 * 17 15 13 19 19 H 1.48498 * 109.46849 * 210.00194 * 17 15 13 20 20 H 1.48504 * 109.46999 * 329.99927 * 17 15 13 21 21 C 1.38080 * 119.96583 * 90.00530 * 7 6 5 22 22 C 1.54034 * 113.92712 * 131.92963 * 2 1 3 23 23 O 1.44182 * 85.51692 * 91.65967 * 22 2 1 24 24 C 1.44175 * 93.33800 * 24.19352 * 23 22 2 25 25 H 1.09003 * 109.47131 * 69.66932 * 1 2 3 26 26 H 1.08997 * 109.47427 * 189.67183 * 1 2 3 27 27 H 1.09005 * 109.47273 * 309.66691 * 1 2 3 28 28 H 0.97002 * 119.99460 * 0.02562 * 5 3 2 29 29 H 1.08995 * 109.47550 * 300.00644 * 6 5 3 30 30 H 1.09006 * 109.46748 * 60.00694 * 6 5 3 31 31 H 1.07998 * 119.93041 * 0.02562 * 8 7 6 32 32 H 1.08004 * 119.96498 * 180.26136 * 9 8 7 33 33 H 1.07997 * 120.03145 * 179.76473 * 10 9 8 34 34 H 0.96995 * 119.99559 * 179.97438 * 16 15 13 35 35 H 1.08001 * 120.03416 * 359.95169 * 21 7 6 36 36 H 1.09002 * 113.86560 * 205.80720 * 22 2 1 37 37 H 1.08998 * 113.86695 * 337.51504 * 22 2 1 38 38 H 1.09000 * 113.86434 * 221.65741 * 24 23 22 39 39 H 1.09000 * 113.97987 * 89.97072 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1188 1.3872 0.0000 4 8 3.0040 1.6703 -0.7794 5 7 1.6656 2.3117 0.8696 6 6 2.2384 3.6600 0.8700 7 6 1.5628 4.4926 1.9290 8 6 0.4344 5.2281 1.6141 9 6 -0.1911 5.9895 2.5842 10 6 0.3155 6.0259 3.8687 11 6 1.4511 5.2928 4.1866 12 8 1.9517 5.3270 5.4480 13 6 1.3688 6.1794 6.3150 14 1 0.4917 6.7354 6.0185 15 6 1.8954 6.3420 7.5873 16 7 2.9641 5.6650 7.9484 17 14 1.0875 7.5224 8.7887 18 1 0.0579 6.7988 9.5771 19 1 2.1157 8.0753 9.7065 20 1 0.4466 8.6316 8.0375 21 6 2.0741 4.5249 3.2112 22 6 2.1547 -0.9408 1.0475 23 8 2.1470 -1.9296 -0.0018 24 6 2.1520 -0.9398 -1.0500 25 1 -0.3633 0.3571 -0.9637 26 1 -0.3634 -1.0130 0.1726 27 1 -0.3634 0.6560 0.7911 28 1 0.9606 2.0840 1.4958 29 1 3.3062 3.6012 1.0809 30 1 2.0857 4.1199 -0.1064 31 1 0.0388 5.2044 0.6095 32 1 -1.0744 6.5594 2.3363 33 1 -0.1714 6.6237 4.6250 34 1 3.3327 5.7791 8.8383 35 1 2.9573 3.9533 3.4556 36 1 3.1538 -0.6441 1.3666 37 1 1.4917 -1.1762 1.8800 38 1 1.4868 -1.1742 -1.8811 39 1 3.1494 -0.6416 -1.3731 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320853918.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:53 Heat of formation + Delta-G solvation = -75.412134 kcal Electronic energy + Delta-G solvation = -22382.617790 eV Core-core repulsion = 18870.358619 eV Total energy + Delta-G solvation = -3512.259171 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.23805 -40.88359 -39.85267 -38.42479 -35.86392 -34.29825 -33.45443 -31.92728 -30.73895 -27.78851 -27.54356 -27.35728 -26.83318 -23.42682 -23.16902 -22.35281 -20.44362 -19.51542 -18.93960 -18.42468 -17.45725 -17.16854 -16.81317 -16.63932 -16.50729 -16.13531 -15.79566 -15.76821 -15.46663 -14.92133 -14.55021 -14.34863 -13.97705 -13.81106 -13.66193 -13.43466 -13.33351 -13.04732 -12.99076 -12.54201 -12.44919 -12.37408 -12.27973 -12.12065 -11.85918 -11.22208 -11.00076 -10.81600 -10.64431 -10.18988 -9.75665 -9.03912 -8.47433 -6.16011 0.37215 0.70049 1.35943 1.43347 1.44490 1.53055 2.15517 2.17581 2.57160 2.84437 3.02986 3.14845 3.39176 3.65675 3.77751 3.85653 4.03911 4.09002 4.29822 4.32172 4.39887 4.50442 4.52116 4.63844 4.72290 4.74664 4.77115 4.79409 4.95876 5.00795 5.04393 5.11405 5.22161 5.24842 5.30113 5.61673 5.69868 5.71224 6.01197 6.15872 6.44338 6.97535 7.09817 7.77568 8.75579 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023856 B = 0.003094 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.411902 B = 9046.980685 C = 9600.046446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.149 4.149 3 C 0.522 3.478 4 O -0.577 6.577 5 N -0.707 5.707 6 C 0.172 3.828 7 C -0.059 4.059 8 C -0.168 4.168 9 C -0.069 4.069 10 C -0.234 4.234 11 C 0.113 3.887 12 O -0.232 6.232 13 C -0.413 4.413 14 H 0.104 0.896 15 C -0.022 4.022 16 N -0.920 5.920 17 Si 1.017 2.983 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.252 1.252 21 C -0.182 4.182 22 C 0.053 3.947 23 O -0.392 6.392 24 C 0.059 3.941 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.413 0.587 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.120 0.880 34 H 0.272 0.728 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.826 -7.685 -14.913 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.152 4.152 3 C 0.309 3.691 4 O -0.457 6.457 5 N -0.359 5.359 6 C 0.049 3.951 7 C -0.060 4.060 8 C -0.186 4.186 9 C -0.087 4.087 10 C -0.254 4.254 11 C 0.062 3.938 12 O -0.139 6.139 13 C -0.489 4.489 14 H 0.121 0.879 15 C -0.220 4.220 16 N -0.559 5.559 17 Si 0.837 3.163 18 H -0.187 1.187 19 H -0.199 1.199 20 H -0.176 1.176 21 C -0.202 4.202 22 C -0.024 4.024 23 O -0.311 6.311 24 C -0.018 4.018 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.249 0.751 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.167 0.833 32 H 0.167 0.833 33 H 0.138 0.862 34 H 0.081 0.919 35 H 0.125 0.875 36 H 0.096 0.904 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.881 -7.901 -15.190 18.849 hybrid contribution 0.003 0.709 1.301 1.481 sum -7.877 -7.192 -13.890 17.513 Atomic orbital electron populations 1.21639 0.87925 1.04546 1.04089 1.24111 1.00654 0.90959 0.99521 1.20819 0.81913 0.86801 0.79575 1.90689 1.32323 1.81314 1.41405 1.46067 1.40703 1.11186 1.37912 1.20072 0.96660 0.81197 0.97215 1.19430 0.96234 0.98273 0.92026 1.20998 0.96833 1.00416 1.00403 1.21168 0.99220 0.97170 0.91132 1.21382 0.99012 1.05694 0.99293 1.19853 0.93284 0.95045 0.85578 1.83946 1.55736 1.57238 1.16986 1.21825 1.12377 1.21217 0.93484 0.87883 1.26572 0.96679 0.99810 0.98937 1.70182 1.22786 1.41964 1.20930 0.84603 0.77663 0.77251 0.76830 1.18743 1.19877 1.17559 1.20223 1.02602 1.04850 0.92494 1.24118 1.01079 0.84889 0.92290 1.89682 1.95812 1.28047 1.17530 1.24062 1.01483 0.84183 0.92056 0.90362 0.89614 0.90374 0.75066 0.91924 0.89326 0.83326 0.83335 0.86208 0.91884 0.87487 0.90424 0.85992 0.86456 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 9.05 71.98 0.65 -0.83 16 2 C -0.15 -2.61 1.31 -52.23 -0.07 -2.68 16 3 C 0.52 12.23 6.95 87.66 0.61 12.84 16 4 O -0.58 -17.88 15.89 -3.05 -0.05 -17.92 16 5 N -0.71 -15.55 5.44 -466.79 -2.54 -18.09 16 6 C 0.17 4.39 5.80 85.63 0.50 4.89 16 7 C -0.06 -1.77 5.25 -19.88 -0.10 -1.87 16 8 C -0.17 -4.46 9.70 22.30 0.22 -4.25 16 9 C -0.07 -2.06 10.04 22.25 0.22 -1.84 16 10 C -0.23 -9.35 9.17 22.39 0.21 -9.14 16 11 C 0.11 5.27 6.65 22.58 0.15 5.42 16 12 O -0.23 -13.49 9.76 -22.72 -0.22 -13.71 16 13 C -0.41 -23.25 9.49 67.92 0.64 -22.61 16 14 H 0.10 5.27 5.20 -2.91 -0.02 5.25 16 15 C -0.02 -1.24 5.49 84.84 0.47 -0.77 16 16 N -0.92 -55.54 13.67 21.62 0.30 -55.24 16 17 Si 1.02 41.65 29.55 68.60 2.03 43.67 16 18 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 21 C -0.18 -7.18 9.65 22.39 0.22 -6.97 16 22 C 0.05 0.96 8.32 72.27 0.60 1.56 16 23 O -0.39 -8.33 12.38 -148.98 -1.85 -10.17 16 24 C 0.06 1.09 8.15 72.27 0.59 1.68 16 25 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.08 0.90 8.06 -2.39 -0.02 0.88 16 27 H 0.08 0.81 7.03 -2.38 -0.02 0.79 16 28 H 0.41 7.74 7.35 -92.71 -0.68 7.06 16 29 H 0.06 1.79 8.08 -2.39 -0.02 1.77 16 30 H 0.09 2.08 8.08 -2.38 -0.02 2.06 16 31 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 32 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 33 H 0.12 4.90 5.64 -2.91 -0.02 4.88 16 34 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 36 H 0.08 1.52 8.09 -2.39 -0.02 1.50 16 37 H 0.12 1.67 8.10 -2.39 -0.02 1.65 16 38 H 0.12 1.62 8.10 -2.39 -0.02 1.60 16 39 H 0.08 1.76 7.39 -2.39 -0.02 1.74 16 Total: -1.00 -72.67 334.78 2.96 -69.70 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.40 Total: 26.34 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: 4.90 Total: -24.57 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -2.24 Total: -73.34 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -2.12 Total: -41.81 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Total: -72.67 2.96 -69.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320853918.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.711 kcal (2) G-P(sol) polarization free energy of solvation -72.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds