Wall clock time and date at job start Tue Mar 31 2020 06:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42890 * 109.46355 * 2 1 4 4 C 1.53043 * 109.45611 * 240.02450 * 2 1 3 5 5 C 1.53199 * 109.31052 * 178.62879 * 4 2 1 6 6 N 1.46925 * 108.77165 * 54.64041 * 5 4 2 7 7 S 1.65598 * 120.63296 * 126.36861 * 6 5 4 8 8 O 1.42104 * 104.27651 * 333.92813 * 7 6 5 9 9 O 1.42095 * 104.28128 * 206.07224 * 7 6 5 10 10 C 1.81399 * 104.45041 * 89.99622 * 7 6 5 11 11 C 1.52997 * 109.47147 * 180.02562 * 10 7 6 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 7 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47418 * 89.99710 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99770 * 17 15 13 20 20 H 1.48508 * 109.47394 * 329.99535 * 17 15 13 21 21 C 1.46926 * 118.73933 * 306.64182 * 6 5 4 22 22 C 1.52757 * 109.01063 * 53.31000 * 21 6 5 23 23 H 1.08994 * 109.47380 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46374 * 299.97111 * 1 2 3 25 25 H 1.08998 * 109.46620 * 59.96676 * 1 2 3 26 26 H 0.96705 * 113.99785 * 60.02985 * 3 2 1 27 27 H 1.09004 * 109.49313 * 58.68243 * 4 2 1 28 28 H 1.08996 * 109.52426 * 298.59735 * 4 2 1 29 29 H 1.08996 * 109.58702 * 294.85487 * 5 4 2 30 30 H 1.08997 * 109.58390 * 174.41975 * 5 4 2 31 31 H 1.08996 * 109.47243 * 60.00524 * 10 7 6 32 32 H 1.09001 * 109.47190 * 300.00108 * 10 7 6 33 33 H 1.09001 * 109.47502 * 60.00399 * 11 10 7 34 34 H 1.09001 * 109.47289 * 300.00196 * 11 10 7 35 35 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 36 36 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 37 37 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.58679 * 173.14916 * 21 6 5 39 39 H 1.09009 * 109.58620 * 293.57049 * 21 6 5 40 40 H 1.09007 * 109.56773 * 185.55124 * 22 21 6 41 41 H 1.09002 * 109.38668 * 65.51532 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0062 1.3472 0.0000 4 6 2.0398 -0.7210 -1.2500 5 6 3.5714 -0.6891 -1.2640 6 7 4.0676 -1.2495 0.0003 7 16 5.1651 -2.4895 0.0005 8 8 4.9442 -3.1533 -1.2364 9 8 4.9443 -3.1529 1.2375 10 6 6.7805 -1.6642 0.0003 11 6 7.8910 -2.7167 -0.0002 12 6 9.2535 -2.0206 0.0003 13 6 10.3472 -3.0573 -0.0008 14 1 10.0957 -4.1076 -0.0013 15 6 11.6690 -2.6649 -0.0001 16 7 11.9753 -1.3859 0.0011 17 14 13.0247 -3.9499 -0.0007 18 1 13.3844 -4.2894 -1.4009 19 1 14.2179 -3.4110 0.7001 20 1 12.5497 -5.1711 0.6983 21 6 3.5668 -0.6929 1.2645 22 6 2.0396 -0.7209 1.2502 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5134 0.8903 25 1 -0.3632 0.5144 -0.8897 26 1 1.7211 1.8651 0.7653 27 1 1.6574 -0.2208 -2.1398 28 1 1.6975 -1.7557 -1.2388 29 1 3.9146 0.3403 -1.3671 30 1 3.9416 -1.2853 -2.0981 31 1 6.8704 -1.0413 0.8901 32 1 6.8703 -1.0415 -0.8898 33 1 7.8011 -3.3394 -0.8903 34 1 7.8014 -3.3398 0.8897 35 1 9.3433 -1.3973 -0.8894 36 1 9.3432 -1.3982 0.8906 37 1 12.9051 -1.1098 0.0020 38 1 3.9342 -1.2914 2.0981 39 1 3.9097 0.3363 1.3718 40 1 1.6569 -0.2208 2.1399 41 1 1.6968 -1.7556 1.2386 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322899436.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:58 Heat of formation + Delta-G solvation = -143.036654 kcal Electronic energy + Delta-G solvation = -22092.245414 eV Core-core repulsion = 18712.497775 eV Total energy + Delta-G solvation = -3379.747639 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.70490 -36.95194 -35.99624 -35.64771 -34.64250 -32.37462 -32.16804 -31.36258 -28.19911 -27.72861 -23.74090 -23.71335 -22.94993 -20.72156 -20.38252 -18.74258 -17.68357 -16.69138 -16.45630 -16.13218 -15.72002 -15.18041 -14.91353 -14.81235 -14.56519 -14.39296 -14.07686 -13.66751 -12.99774 -12.62516 -12.49646 -12.27458 -12.21953 -12.18036 -11.99653 -11.93274 -11.75494 -11.71639 -11.38986 -11.28963 -11.08330 -10.91348 -10.83572 -10.59362 -10.39582 -10.15779 -9.93744 -9.47408 -9.20508 -8.87265 -8.39896 -6.04703 -4.07828 0.46277 2.76456 3.31118 3.37119 3.41252 3.90198 4.03505 4.29358 4.36568 4.43102 4.43502 4.56911 4.82573 4.89938 5.15976 5.18883 5.22188 5.23452 5.29541 5.31798 5.39092 5.46406 5.52482 5.61038 5.70273 5.79747 5.82079 5.91907 6.04157 6.10417 6.27428 6.47084 6.54651 6.88738 7.38743 7.58302 7.68362 7.93376 8.33914 8.98456 9.56817 11.06555 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.038542 B = 0.003234 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.298825 B = 8655.793174 C = 8851.684028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.130 3.870 3 O -0.555 6.555 4 C -0.116 4.116 5 C 0.121 3.879 6 N -1.003 6.003 7 S 2.598 3.402 8 O -0.961 6.961 9 O -0.962 6.962 10 C -0.608 4.608 11 C -0.106 4.106 12 C 0.031 3.969 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.122 3.878 22 C -0.157 4.157 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.374 0.626 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.261 0.739 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.451 5.955 1.032 24.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.090 3.910 3 O -0.361 6.361 4 C -0.155 4.155 5 C -0.004 4.004 6 N -0.840 5.840 7 S 2.695 3.305 8 O -0.951 6.951 9 O -0.952 6.952 10 C -0.740 4.740 11 C -0.145 4.145 12 C -0.008 4.008 13 C -0.565 4.565 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.003 4.003 22 C -0.196 4.196 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.221 0.779 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.273 4.954 0.472 23.799 hybrid contribution 0.844 0.239 0.577 1.050 sum -22.429 5.193 1.049 23.046 Atomic orbital electron populations 1.22490 0.95769 1.02792 1.02465 1.21133 0.92118 0.82473 0.95297 1.86571 1.77175 1.22975 1.49338 1.21854 0.96305 1.00445 0.96910 1.21356 0.93976 0.99943 0.85112 1.57814 1.58803 1.55812 1.11593 1.05413 0.76535 0.74404 0.74115 1.93549 1.84628 1.71646 1.45309 1.93544 1.84651 1.71690 1.45341 1.30589 1.19320 1.12852 1.11204 1.21504 0.95740 0.95430 1.01872 1.19062 0.88211 0.95759 0.97736 1.21259 0.90987 0.93174 1.51030 0.92377 1.25021 0.98899 0.95357 0.95113 1.69955 1.18350 1.14519 1.50619 0.86553 0.81367 0.81681 0.78192 1.20561 1.21172 1.19742 1.21230 0.93843 0.99818 0.85413 1.22476 0.96739 1.02256 0.98163 0.91565 0.92322 0.91736 0.77948 0.90157 0.90175 0.90576 0.88833 0.85507 0.85458 0.91631 0.91656 0.96116 0.96123 0.92894 0.88832 0.90975 0.90561 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 8.81 37.16 0.33 -0.78 16 2 C 0.13 1.03 0.98 -90.57 -0.09 0.95 16 3 O -0.55 -4.46 11.71 -35.23 -0.41 -4.87 16 4 C -0.12 -1.07 5.11 -26.61 -0.14 -1.20 16 5 C 0.12 1.31 6.19 -3.71 -0.02 1.29 16 6 N -1.00 -12.02 3.23 -113.76 -0.37 -12.38 16 7 S 2.60 39.67 5.45 -107.50 -0.59 39.08 16 8 O -0.96 -17.06 16.59 -57.54 -0.95 -18.02 16 9 O -0.96 -16.99 16.58 -57.54 -0.95 -17.94 16 10 C -0.61 -9.73 6.18 37.16 0.23 -9.50 16 11 C -0.11 -2.20 5.16 -26.73 -0.14 -2.34 16 12 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 13 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 17 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 21 C 0.12 1.24 6.17 -3.93 -0.02 1.21 16 22 C -0.16 -1.29 5.07 -26.83 -0.14 -1.43 16 23 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.37 1.68 9.04 45.56 0.41 2.10 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.78 7.81 -51.93 -0.41 0.38 16 30 H 0.09 1.04 6.86 -51.93 -0.36 0.69 16 31 H 0.13 1.83 8.14 -51.93 -0.42 1.41 16 32 H 0.13 1.85 8.14 -51.92 -0.42 1.43 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.09 0.99 6.85 -51.93 -0.36 0.64 16 39 H 0.07 0.64 7.81 -51.92 -0.41 0.24 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 341.19 15.07 5.14 5.14 Total: -1.00 -35.12 341.19 -9.10 -44.23 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.15 Total: -0.99 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: -0.54 Total: -24.89 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.37 Total: -38.45 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -2.32 Total: -40.84 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 39.67 SS G_CDS: -0.59 Total: 39.08 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.12 -9.10 -44.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322899436.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.812 kcal (2) G-P(sol) polarization free energy of solvation -35.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds