Wall clock time and date at job start Tue Mar 31 2020 06:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42890 * 109.46355 * 2 1 4 4 C 1.53043 * 109.45611 * 240.02450 * 2 1 3 5 5 C 1.53199 * 109.31052 * 178.62879 * 4 2 1 6 6 N 1.46925 * 108.77165 * 54.64041 * 5 4 2 7 7 S 1.65598 * 120.63296 * 126.36861 * 6 5 4 8 8 O 1.42104 * 104.27651 * 333.92813 * 7 6 5 9 9 O 1.42095 * 104.28128 * 206.07224 * 7 6 5 10 10 C 1.81399 * 104.45041 * 89.99622 * 7 6 5 11 11 C 1.52997 * 109.47147 * 180.02562 * 10 7 6 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 7 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47418 * 89.99710 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99770 * 17 15 13 20 20 H 1.48508 * 109.47394 * 329.99535 * 17 15 13 21 21 C 1.46926 * 118.73933 * 306.64182 * 6 5 4 22 22 C 1.52757 * 109.01063 * 53.31000 * 21 6 5 23 23 H 1.08994 * 109.47380 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46374 * 299.97111 * 1 2 3 25 25 H 1.08998 * 109.46620 * 59.96676 * 1 2 3 26 26 H 0.96705 * 113.99785 * 60.02985 * 3 2 1 27 27 H 1.09004 * 109.49313 * 58.68243 * 4 2 1 28 28 H 1.08996 * 109.52426 * 298.59735 * 4 2 1 29 29 H 1.08996 * 109.58702 * 294.85487 * 5 4 2 30 30 H 1.08997 * 109.58390 * 174.41975 * 5 4 2 31 31 H 1.08996 * 109.47243 * 60.00524 * 10 7 6 32 32 H 1.09001 * 109.47190 * 300.00108 * 10 7 6 33 33 H 1.09001 * 109.47502 * 60.00399 * 11 10 7 34 34 H 1.09001 * 109.47289 * 300.00196 * 11 10 7 35 35 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 36 36 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 37 37 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.58679 * 173.14916 * 21 6 5 39 39 H 1.09009 * 109.58620 * 293.57049 * 21 6 5 40 40 H 1.09007 * 109.56773 * 185.55124 * 22 21 6 41 41 H 1.09002 * 109.38668 * 65.51532 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0062 1.3472 0.0000 4 6 2.0398 -0.7210 -1.2500 5 6 3.5714 -0.6891 -1.2640 6 7 4.0676 -1.2495 0.0003 7 16 5.1651 -2.4895 0.0005 8 8 4.9442 -3.1533 -1.2364 9 8 4.9443 -3.1529 1.2375 10 6 6.7805 -1.6642 0.0003 11 6 7.8910 -2.7167 -0.0002 12 6 9.2535 -2.0206 0.0003 13 6 10.3472 -3.0573 -0.0008 14 1 10.0957 -4.1076 -0.0013 15 6 11.6690 -2.6649 -0.0001 16 7 11.9753 -1.3859 0.0011 17 14 13.0247 -3.9499 -0.0007 18 1 13.3844 -4.2894 -1.4009 19 1 14.2179 -3.4110 0.7001 20 1 12.5497 -5.1711 0.6983 21 6 3.5668 -0.6929 1.2645 22 6 2.0396 -0.7209 1.2502 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5134 0.8903 25 1 -0.3632 0.5144 -0.8897 26 1 1.7211 1.8651 0.7653 27 1 1.6574 -0.2208 -2.1398 28 1 1.6975 -1.7557 -1.2388 29 1 3.9146 0.3403 -1.3671 30 1 3.9416 -1.2853 -2.0981 31 1 6.8704 -1.0413 0.8901 32 1 6.8703 -1.0415 -0.8898 33 1 7.8011 -3.3394 -0.8903 34 1 7.8014 -3.3398 0.8897 35 1 9.3433 -1.3973 -0.8894 36 1 9.3432 -1.3982 0.8906 37 1 12.9051 -1.1098 0.0020 38 1 3.9342 -1.2914 2.0981 39 1 3.9097 0.3363 1.3718 40 1 1.6569 -0.2208 2.1399 41 1 1.6968 -1.7556 1.2386 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322899436.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:57 Heat of formation + Delta-G solvation = -169.697258 kcal Electronic energy + Delta-G solvation = -22093.401505 eV Core-core repulsion = 18712.497775 eV Total energy + Delta-G solvation = -3380.903729 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.38328 -38.28549 -37.11651 -36.64816 -36.46799 -34.17989 -33.02160 -32.11245 -29.68633 -28.79274 -25.62231 -24.49458 -23.75239 -22.36465 -21.26237 -19.83264 -18.82114 -18.57962 -17.34373 -17.31198 -17.02108 -16.49357 -16.13353 -15.79229 -15.54529 -15.39444 -15.29896 -14.52129 -14.34961 -14.09615 -13.80424 -13.55462 -13.36649 -13.21862 -13.04407 -13.02301 -12.82150 -12.78846 -12.76382 -12.64344 -12.62811 -12.18760 -12.12797 -11.92111 -11.77936 -11.39571 -11.27652 -11.08100 -10.76799 -10.59103 -9.89046 -8.23924 -6.35445 -0.78844 1.39407 1.40447 1.51876 1.65777 2.38941 2.77598 3.09356 3.11736 3.38045 3.56053 3.76892 3.79072 3.87981 3.96501 4.15058 4.19337 4.36529 4.44350 4.58067 4.61024 4.69662 4.77769 4.82567 4.85831 4.87421 4.93337 5.03410 5.07654 5.12629 5.23195 5.33940 5.40801 5.43076 5.59809 5.65927 5.77456 6.17757 6.80034 6.99654 7.34024 8.87717 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.038542 B = 0.003234 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.298825 B = 8655.793174 C = 8851.684028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.133 3.867 3 O -0.568 6.568 4 C -0.121 4.121 5 C 0.115 3.885 6 N -0.995 5.995 7 S 2.623 3.377 8 O -0.986 6.986 9 O -0.985 6.985 10 C -0.610 4.610 11 C -0.106 4.106 12 C 0.031 3.969 13 C -0.554 4.554 14 H 0.060 0.940 15 C 0.002 3.998 16 N -0.930 5.930 17 Si 0.965 3.035 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.264 1.264 21 C 0.112 3.888 22 C -0.156 4.156 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.389 0.611 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.002 0.998 36 H 0.003 0.997 37 H 0.265 0.735 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.635 6.235 1.396 25.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.092 3.908 3 O -0.376 6.376 4 C -0.160 4.160 5 C -0.010 4.010 6 N -0.835 5.835 7 S 2.720 3.280 8 O -0.977 6.977 9 O -0.976 6.976 10 C -0.740 4.740 11 C -0.145 4.145 12 C -0.007 4.007 13 C -0.592 4.592 14 H 0.079 0.921 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.789 3.211 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.189 1.189 21 C -0.013 4.013 22 C -0.195 4.195 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.239 0.761 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.020 0.980 36 H 0.021 0.979 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.121 0.879 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -24.458 5.236 0.846 25.026 hybrid contribution 1.158 0.240 0.467 1.271 sum -23.300 5.475 1.312 23.970 Atomic orbital electron populations 1.22431 0.94305 1.03056 1.03225 1.21063 0.93105 0.82380 0.94213 1.86534 1.77514 1.22995 1.50547 1.21915 0.94904 1.00774 0.98410 1.21527 0.95321 0.99995 0.84136 1.57551 1.57548 1.55318 1.13036 1.04429 0.76187 0.74466 0.72891 1.93511 1.84925 1.72845 1.46386 1.93508 1.84931 1.72810 1.46301 1.30569 1.18634 1.12041 1.12769 1.21319 0.94821 0.96390 1.01999 1.18957 0.90706 0.95171 0.95851 1.21738 0.92306 0.93928 1.51189 0.92137 1.25956 1.01565 0.97583 0.94499 1.70070 1.19131 1.16510 1.51297 0.85454 0.78051 0.79007 0.78607 1.19663 1.20448 1.18852 1.21508 0.95395 1.00332 0.84043 1.22504 0.95089 1.02250 0.99645 0.91555 0.90770 0.91807 0.76103 0.89102 0.90555 0.89797 0.89576 0.83954 0.84088 0.91609 0.91561 0.97992 0.97910 0.92579 0.89481 0.89398 0.87875 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 8.81 71.98 0.63 -1.06 16 2 C 0.13 1.79 0.98 -10.76 -0.01 1.78 16 3 O -0.57 -7.57 11.71 -148.98 -1.74 -9.31 16 4 C -0.12 -2.04 5.11 30.68 0.16 -1.88 16 5 C 0.11 2.35 6.19 86.37 0.54 2.88 16 6 N -1.00 -22.69 3.23 -513.84 -1.66 -24.35 16 7 S 2.62 79.03 5.45 -56.49 -0.31 78.72 16 8 O -0.99 -34.91 16.59 -127.65 -2.12 -37.02 16 9 O -0.99 -34.44 16.58 -127.65 -2.12 -36.55 16 10 C -0.61 -19.34 6.18 71.98 0.44 -18.90 16 11 C -0.11 -4.46 5.16 30.60 0.16 -4.30 16 12 C 0.03 1.66 4.97 29.85 0.15 1.81 16 13 C -0.55 -31.99 9.11 25.60 0.23 -31.75 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 15 C 0.00 0.13 5.46 84.65 0.46 0.59 16 16 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 17 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 21 C 0.11 2.06 6.17 86.22 0.53 2.59 16 22 C -0.16 -2.19 5.07 30.53 0.15 -2.03 16 23 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.39 2.28 9.04 -74.05 -0.67 1.61 16 27 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.59 7.81 -2.39 -0.02 1.57 16 30 H 0.09 1.88 6.86 -2.39 -0.02 1.86 16 31 H 0.14 4.02 8.14 -2.39 -0.02 4.00 16 32 H 0.14 4.04 8.14 -2.39 -0.02 4.02 16 33 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.09 1.73 6.85 -2.39 -0.02 1.72 16 39 H 0.09 1.35 7.81 -2.38 -0.02 1.33 16 40 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -75.01 341.19 -1.85 -76.86 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.34 Total: 11.43 kcal Atomic # 6 Polarization: -53.73 SS G_CDS: 3.45 Total: -50.28 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -1.37 Total: -80.44 kcal Atomic # 8 Polarization: -76.91 SS G_CDS: -5.98 Total: -82.89 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 79.03 SS G_CDS: -0.31 Total: 78.72 kcal Total: -75.01 -1.85 -76.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322899436.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.838 kcal (2) G-P(sol) polarization free energy of solvation -75.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds