Wall clock time and date at job start Tue Mar 31 2020 06:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47100 * 2 1 4 4 C 1.50695 * 109.47153 * 120.00209 * 2 1 3 5 5 O 1.21292 * 119.99924 * 95.00582 * 4 2 1 6 6 N 1.34775 * 119.99791 * 274.99599 * 4 2 1 7 7 C 1.39996 * 119.99458 * 174.80225 * 6 4 2 8 8 C 1.38917 * 120.00700 * 326.12132 * 7 6 4 9 9 C 1.38005 * 120.00167 * 179.79153 * 8 7 6 10 10 C 1.38902 * 119.99882 * 0.46279 * 9 8 7 11 11 O 1.35777 * 119.99759 * 179.77291 * 10 9 8 12 12 C 1.34814 * 116.99794 * 185.94286 * 11 10 9 13 13 H 1.08001 * 120.00270 * 5.39761 * 12 11 10 14 14 C 1.38641 * 119.99728 * 185.39973 * 12 11 10 15 15 N 1.31568 * 119.99715 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99854 * 180.02562 * 14 12 11 17 17 H 1.48490 * 109.47368 * 59.99510 * 16 14 12 18 18 H 1.48498 * 109.46825 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47004 * 299.99563 * 16 14 12 20 20 C 1.38906 * 120.00587 * 359.78503 * 10 9 8 21 21 C 1.38006 * 119.99981 * 359.97438 * 20 10 9 22 22 C 1.53004 * 109.46840 * 240.00599 * 2 1 3 23 23 C 1.52993 * 117.50187 * 59.99749 * 22 2 1 24 24 C 1.52995 * 117.49761 * 351.37120 * 22 2 1 25 25 H 1.09002 * 109.47296 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47075 * 299.99593 * 1 2 3 27 27 H 1.08998 * 109.47623 * 59.99486 * 1 2 3 28 28 H 0.96694 * 113.99896 * 180.02562 * 3 2 1 29 29 H 0.96995 * 120.00872 * 354.80355 * 6 4 2 30 30 H 1.08006 * 119.99836 * 0.02562 * 8 7 6 31 31 H 1.07998 * 119.99601 * 180.23049 * 9 8 7 32 32 H 0.97006 * 119.99940 * 179.97438 * 15 14 12 33 33 H 1.08000 * 120.00238 * 179.97438 * 20 10 9 34 34 H 1.08002 * 120.00130 * 179.97438 * 21 20 10 35 35 H 1.09004 * 115.55886 * 205.68902 * 22 2 1 36 36 H 1.08995 * 117.49992 * 145.01980 * 23 22 2 37 37 H 1.09004 * 117.49842 * 359.97438 * 23 22 2 38 38 H 1.08994 * 117.50324 * 0.02562 * 24 22 2 39 39 H 1.09001 * 117.50042 * 214.97673 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3209 -1.8873 1.1758 6 7 2.1611 -0.0381 2.3913 7 6 2.5229 -0.7205 3.5589 8 6 2.0941 -2.0262 3.7617 9 6 2.4544 -2.7003 4.9107 10 6 3.2380 -2.0699 5.8689 11 8 3.5886 -2.7316 7.0015 12 6 4.2441 -2.0257 7.9446 13 1 4.3907 -0.9630 7.8194 14 6 4.7301 -2.6639 9.0754 15 7 4.5512 -3.9584 9.2281 16 14 5.6378 -1.6857 10.3826 17 1 4.7425 -0.6314 10.9226 18 1 6.0517 -2.5940 11.4821 19 1 6.8403 -1.0542 9.7823 20 6 3.6626 -0.7626 5.6687 21 6 3.3064 -0.0901 4.5174 22 6 2.0399 -0.7211 -1.2494 23 6 1.6356 -0.1494 -2.6096 24 6 1.0103 -1.4540 -2.1117 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 2.9702 1.4237 -0.0004 29 1 2.0031 0.9186 2.4180 30 1 1.4817 -2.5150 3.0183 31 1 2.1240 -3.7166 5.0666 32 1 4.8915 -4.4051 10.0191 33 1 4.2715 -0.2724 6.4139 34 1 3.6362 0.9265 4.3618 35 1 3.0322 -1.1643 -1.1645 36 1 2.3618 -0.2163 -3.4197 37 1 1.0059 0.7404 -2.6145 38 1 -0.0304 -1.4221 -1.7893 39 1 1.3252 -2.3792 -2.5943 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323982750.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:30 Heat of formation + Delta-G solvation = -53.521740 kcal Electronic energy + Delta-G solvation = -22620.218900 eV Core-core repulsion = 19108.908968 eV Total energy + Delta-G solvation = -3511.309932 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.75060 -39.09404 -38.04482 -36.40742 -35.91150 -33.84318 -32.19650 -30.90252 -30.24514 -27.96728 -25.65249 -25.21213 -22.64412 -22.54251 -22.05224 -20.59865 -19.80791 -18.42338 -17.87123 -17.39345 -16.92010 -16.18175 -15.66189 -15.26416 -14.58994 -14.42333 -14.27453 -13.90551 -13.61271 -13.50776 -13.37455 -12.86325 -12.75784 -12.53661 -12.43536 -12.08188 -11.79895 -11.59042 -11.56650 -11.52093 -11.05269 -10.89466 -10.73293 -10.65167 -10.48743 -10.45393 -9.72262 -9.49154 -9.22363 -8.72464 -8.23263 -6.94833 -6.45745 -4.03861 2.00422 2.17186 2.76107 3.06213 3.12535 3.14043 3.16463 3.50126 3.91154 3.95908 4.31863 4.41393 4.56888 4.64081 4.75528 4.92126 5.09112 5.17364 5.29172 5.33353 5.42699 5.47924 5.54018 5.60805 5.74833 5.78284 5.86627 5.92574 6.12327 6.20093 6.24516 6.76691 6.81986 6.92692 7.12378 7.13000 7.20599 7.38951 7.69001 7.75778 7.98388 8.30390 8.99357 9.69613 10.72134 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.043078 B = 0.002926 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.827760 B = 9568.504012 C = 9903.557637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.154 3.846 3 O -0.548 6.548 4 C 0.482 3.518 5 O -0.516 6.516 6 N -0.652 5.652 7 C 0.033 3.967 8 C -0.067 4.067 9 C -0.178 4.178 10 C 0.147 3.853 11 O -0.176 6.176 12 C -0.392 4.392 13 H 0.091 0.909 14 C 0.039 3.961 15 N -0.862 5.862 16 Si 0.941 3.059 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.270 1.270 20 C -0.219 4.219 21 C -0.089 4.089 22 C -0.173 4.173 23 C -0.166 4.166 24 C -0.170 4.170 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.383 0.617 29 H 0.406 0.594 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.271 0.729 33 H 0.132 0.868 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.004 10.436 -18.451 22.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.110 3.890 3 O -0.354 6.354 4 C 0.267 3.733 5 O -0.391 6.391 6 N -0.297 5.297 7 C -0.059 4.059 8 C -0.087 4.087 9 C -0.198 4.198 10 C 0.093 3.907 11 O -0.079 6.079 12 C -0.469 4.469 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.496 5.496 16 Si 0.766 3.234 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.195 1.195 20 C -0.239 4.239 21 C -0.109 4.109 22 C -0.192 4.192 23 C -0.203 4.203 24 C -0.207 4.207 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.231 0.769 29 H 0.242 0.758 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.081 0.919 33 H 0.149 0.851 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.434 9.297 -18.249 21.467 hybrid contribution 1.165 0.860 0.704 1.610 sum -5.270 10.157 -17.544 20.946 Atomic orbital electron populations 1.21872 0.90648 1.03455 1.03829 1.20818 0.96108 0.81683 0.90426 1.86548 1.27474 1.24599 1.96803 1.21271 0.78839 0.88217 0.84975 1.90739 1.47718 1.15894 1.84790 1.43258 1.67701 1.11900 1.06832 1.17274 1.05634 0.94499 0.88484 1.20580 0.98754 0.93250 0.96115 1.20119 1.04289 1.00916 0.94444 1.19414 0.92846 0.90897 0.87532 1.84004 1.64961 1.37227 1.21684 1.21266 1.35288 0.92739 0.97563 0.89138 1.25295 0.97219 0.96045 0.97963 1.70037 1.42889 1.08429 1.28275 0.85781 0.79485 0.78805 0.79364 1.19490 1.20270 1.19505 1.20984 1.07324 0.95987 0.99571 1.20483 0.97159 0.99112 0.94178 1.22648 1.01173 1.04499 0.90849 1.22924 1.03741 0.97703 0.95907 1.23096 0.98549 0.96215 1.02809 0.89973 0.91121 0.90522 0.76889 0.75830 0.85930 0.86096 0.91924 0.85069 0.87115 0.86989 0.88661 0.88313 0.87956 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 7.42 37.16 0.28 -0.99 16 2 C 0.15 1.57 1.14 -91.77 -0.10 1.46 16 3 O -0.55 -4.77 12.15 -35.23 -0.43 -5.20 16 4 C 0.48 6.73 6.41 -10.99 -0.07 6.66 16 5 O -0.52 -9.23 13.88 5.55 0.08 -9.15 16 6 N -0.65 -9.04 5.28 -9.82 -0.05 -9.09 16 7 C 0.03 0.60 6.27 -83.62 -0.52 0.07 16 8 C -0.07 -1.33 8.65 -39.42 -0.34 -1.67 16 9 C -0.18 -3.94 9.98 -39.42 -0.39 -4.33 16 10 C 0.15 3.59 6.65 -39.09 -0.26 3.33 16 11 O -0.18 -5.03 9.75 0.01 0.00 -5.03 16 12 C -0.39 -10.92 9.44 30.88 0.29 -10.62 16 13 H 0.09 2.30 5.29 -52.49 -0.28 2.02 16 14 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 15 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 16 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 17 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 C -0.22 -4.70 9.12 -39.42 -0.36 -5.06 16 21 C -0.09 -1.61 9.96 -39.41 -0.39 -2.00 16 22 C -0.17 -1.70 4.84 -90.62 -0.44 -2.14 16 23 C -0.17 -1.27 9.80 -26.73 -0.26 -1.54 16 24 C -0.17 -1.45 9.57 -26.73 -0.26 -1.71 16 25 H 0.08 0.74 6.98 -51.93 -0.36 0.38 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.58 7.07 -51.93 -0.37 0.21 16 28 H 0.38 2.38 9.04 45.56 0.41 2.79 16 29 H 0.41 4.47 8.18 -40.82 -0.33 4.13 16 30 H 0.12 2.36 6.45 -52.48 -0.34 2.02 16 31 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.13 2.78 5.71 -52.49 -0.30 2.48 16 34 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.11 1.25 7.95 -51.93 -0.41 0.84 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.72 7.61 -51.93 -0.39 0.32 16 38 H 0.10 0.79 5.85 -51.93 -0.30 0.49 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 329.32 15.07 4.96 4.96 Total: -1.00 -32.85 329.32 -6.56 -39.41 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -3.93 Total: 10.84 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -2.93 Total: -17.55 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.71 Total: -33.64 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.35 Total: -19.38 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.85 -6.56 -39.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323982750.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.109 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds