Wall clock time and date at job start Tue Mar 31 2020 06:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47100 * 2 1 4 4 C 1.50695 * 109.47153 * 120.00209 * 2 1 3 5 5 O 1.21292 * 119.99924 * 95.00582 * 4 2 1 6 6 N 1.34775 * 119.99791 * 274.99599 * 4 2 1 7 7 C 1.39996 * 119.99458 * 174.80225 * 6 4 2 8 8 C 1.38917 * 120.00700 * 326.12132 * 7 6 4 9 9 C 1.38005 * 120.00167 * 179.79153 * 8 7 6 10 10 C 1.38902 * 119.99882 * 0.46279 * 9 8 7 11 11 O 1.35777 * 119.99759 * 179.77291 * 10 9 8 12 12 C 1.34814 * 116.99794 * 185.94286 * 11 10 9 13 13 H 1.08001 * 120.00270 * 5.39761 * 12 11 10 14 14 C 1.38641 * 119.99728 * 185.39973 * 12 11 10 15 15 N 1.31568 * 119.99715 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99854 * 180.02562 * 14 12 11 17 17 H 1.48490 * 109.47368 * 59.99510 * 16 14 12 18 18 H 1.48498 * 109.46825 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47004 * 299.99563 * 16 14 12 20 20 C 1.38906 * 120.00587 * 359.78503 * 10 9 8 21 21 C 1.38006 * 119.99981 * 359.97438 * 20 10 9 22 22 C 1.53004 * 109.46840 * 240.00599 * 2 1 3 23 23 C 1.52993 * 117.50187 * 59.99749 * 22 2 1 24 24 C 1.52995 * 117.49761 * 351.37120 * 22 2 1 25 25 H 1.09002 * 109.47296 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47075 * 299.99593 * 1 2 3 27 27 H 1.08998 * 109.47623 * 59.99486 * 1 2 3 28 28 H 0.96694 * 113.99896 * 180.02562 * 3 2 1 29 29 H 0.96995 * 120.00872 * 354.80355 * 6 4 2 30 30 H 1.08006 * 119.99836 * 0.02562 * 8 7 6 31 31 H 1.07998 * 119.99601 * 180.23049 * 9 8 7 32 32 H 0.97006 * 119.99940 * 179.97438 * 15 14 12 33 33 H 1.08000 * 120.00238 * 179.97438 * 20 10 9 34 34 H 1.08002 * 120.00130 * 179.97438 * 21 20 10 35 35 H 1.09004 * 115.55886 * 205.68902 * 22 2 1 36 36 H 1.08995 * 117.49992 * 145.01980 * 23 22 2 37 37 H 1.09004 * 117.49842 * 359.97438 * 23 22 2 38 38 H 1.08994 * 117.50324 * 0.02562 * 24 22 2 39 39 H 1.09001 * 117.50042 * 214.97673 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3209 -1.8873 1.1758 6 7 2.1611 -0.0381 2.3913 7 6 2.5229 -0.7205 3.5589 8 6 2.0941 -2.0262 3.7617 9 6 2.4544 -2.7003 4.9107 10 6 3.2380 -2.0699 5.8689 11 8 3.5886 -2.7316 7.0015 12 6 4.2441 -2.0257 7.9446 13 1 4.3907 -0.9630 7.8194 14 6 4.7301 -2.6639 9.0754 15 7 4.5512 -3.9584 9.2281 16 14 5.6378 -1.6857 10.3826 17 1 4.7425 -0.6314 10.9226 18 1 6.0517 -2.5940 11.4821 19 1 6.8403 -1.0542 9.7823 20 6 3.6626 -0.7626 5.6687 21 6 3.3064 -0.0901 4.5174 22 6 2.0399 -0.7211 -1.2494 23 6 1.6356 -0.1494 -2.6096 24 6 1.0103 -1.4540 -2.1117 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 2.9702 1.4237 -0.0004 29 1 2.0031 0.9186 2.4180 30 1 1.4817 -2.5150 3.0183 31 1 2.1240 -3.7166 5.0666 32 1 4.8915 -4.4051 10.0191 33 1 4.2715 -0.2724 6.4139 34 1 3.6362 0.9265 4.3618 35 1 3.0322 -1.1643 -1.1645 36 1 2.3618 -0.2163 -3.4197 37 1 1.0059 0.7404 -2.6145 38 1 -0.0304 -1.4221 -1.7893 39 1 1.3252 -2.3792 -2.5943 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323982750.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:30 Heat of formation + Delta-G solvation = -77.546205 kcal Electronic energy + Delta-G solvation = -22621.260679 eV Core-core repulsion = 19108.908968 eV Total energy + Delta-G solvation = -3512.351711 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.89458 -40.66595 -39.25013 -37.97312 -36.66286 -35.26694 -34.14831 -31.91390 -31.70490 -29.52742 -27.38062 -26.30738 -24.08460 -23.54664 -23.21005 -21.99559 -20.71150 -19.94327 -19.26755 -18.97434 -18.10240 -17.42123 -16.66861 -16.48715 -16.37070 -15.92987 -15.58020 -15.43013 -14.90965 -14.67232 -14.58742 -14.35643 -14.12471 -13.60053 -13.47411 -13.33598 -13.24786 -13.11510 -12.88323 -12.69605 -12.41000 -12.14985 -12.13478 -11.64682 -11.42560 -11.39634 -11.16543 -11.06186 -10.63285 -10.47612 -9.88101 -8.64185 -8.46358 -6.13918 0.45871 0.49492 1.36640 1.43516 1.53260 1.53779 1.96107 2.18924 2.75935 2.81470 3.14412 3.20144 3.48285 3.48699 3.58513 3.89694 4.03033 4.05120 4.09320 4.22615 4.45539 4.46290 4.58178 4.68664 4.71768 4.76599 4.86243 4.98299 5.04554 5.08900 5.14066 5.23558 5.27277 5.27950 5.41802 5.52453 5.65151 6.01082 6.10862 6.35793 6.64031 6.97656 7.13595 7.77894 8.76839 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.043078 B = 0.002926 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.827760 B = 9568.504012 C = 9903.557637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.170 3.830 3 O -0.543 6.543 4 C 0.482 3.518 5 O -0.556 6.556 6 N -0.642 5.642 7 C 0.060 3.940 8 C -0.073 4.073 9 C -0.189 4.189 10 C 0.109 3.891 11 O -0.230 6.230 12 C -0.414 4.414 13 H 0.106 0.894 14 C -0.024 4.024 15 N -0.922 5.922 16 Si 1.020 2.980 17 H -0.255 1.255 18 H -0.274 1.274 19 H -0.256 1.256 20 C -0.219 4.219 21 C -0.079 4.079 22 C -0.193 4.193 23 C -0.143 4.143 24 C -0.176 4.176 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.395 0.605 29 H 0.426 0.574 30 H 0.128 0.872 31 H 0.113 0.887 32 H 0.273 0.727 33 H 0.133 0.867 34 H 0.158 0.842 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.278 14.034 -20.547 25.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.125 3.875 3 O -0.351 6.351 4 C 0.269 3.731 5 O -0.433 6.433 6 N -0.289 5.289 7 C -0.034 4.034 8 C -0.093 4.093 9 C -0.209 4.209 10 C 0.058 3.942 11 O -0.137 6.137 12 C -0.490 4.490 13 H 0.124 0.876 14 C -0.222 4.222 15 N -0.561 5.561 16 Si 0.839 3.161 17 H -0.179 1.179 18 H -0.199 1.199 19 H -0.180 1.180 20 C -0.239 4.239 21 C -0.099 4.099 22 C -0.212 4.212 23 C -0.180 4.180 24 C -0.213 4.213 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.115 0.885 28 H 0.245 0.755 29 H 0.265 0.735 30 H 0.146 0.854 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.151 0.849 34 H 0.176 0.824 35 H 0.111 0.889 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.730 12.965 -20.417 25.105 hybrid contribution 1.123 -0.167 0.979 1.499 sum -5.608 12.798 -19.438 23.939 Atomic orbital electron populations 1.21936 0.89423 1.03657 1.05001 1.20631 0.96746 0.81891 0.88192 1.86549 1.28803 1.23196 1.96542 1.22147 0.77278 0.87815 0.85815 1.90734 1.49119 1.17983 1.85493 1.43232 1.67348 1.12761 1.05548 1.17423 1.02978 0.93641 0.89329 1.20690 0.98979 0.94357 0.95253 1.20243 1.04488 1.01040 0.95132 1.19860 0.94394 0.92490 0.87467 1.83969 1.67348 1.38916 1.23454 1.21832 1.35334 0.93683 0.98126 0.87631 1.26642 0.97989 0.97207 1.00337 1.70199 1.45538 1.10748 1.29566 0.84624 0.78355 0.77289 0.75810 1.17941 1.19911 1.17984 1.21147 1.07003 0.94913 1.00832 1.20848 0.95827 1.00847 0.92395 1.22592 1.00746 1.06016 0.91820 1.22988 1.03229 0.97424 0.94385 1.23214 0.98728 0.96838 1.02526 0.90329 0.90874 0.88480 0.75455 0.73527 0.85376 0.86901 0.91846 0.84923 0.82407 0.88875 0.87676 0.87185 0.87075 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 7.42 71.98 0.53 -1.57 16 2 C 0.17 2.95 1.14 -11.54 -0.01 2.94 16 3 O -0.54 -7.26 12.15 -148.98 -1.81 -9.07 16 4 C 0.48 12.35 6.41 87.66 0.56 12.91 16 5 O -0.56 -19.30 13.88 -3.07 -0.04 -19.34 16 6 N -0.64 -15.70 5.28 -303.38 -1.60 -17.31 16 7 C 0.06 2.00 6.27 38.16 0.24 2.24 16 8 C -0.07 -2.86 8.65 22.38 0.19 -2.67 16 9 C -0.19 -8.71 9.98 22.37 0.22 -8.48 16 10 C 0.11 5.51 6.65 22.59 0.15 5.66 16 11 O -0.23 -14.00 9.75 -22.88 -0.22 -14.22 16 12 C -0.41 -23.93 9.44 67.92 0.64 -23.29 16 13 H 0.11 5.47 5.29 -2.91 -0.02 5.46 16 14 C -0.02 -1.38 5.49 84.83 0.47 -0.92 16 15 N -0.92 -57.06 13.67 21.61 0.30 -56.76 16 16 Si 1.02 42.40 29.55 68.60 2.03 44.42 16 17 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 19 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 20 C -0.22 -9.32 9.12 22.37 0.20 -9.12 16 21 C -0.08 -2.64 9.96 22.38 0.22 -2.41 16 22 C -0.19 -3.36 4.84 -10.80 -0.05 -3.41 16 23 C -0.14 -1.74 9.80 30.59 0.30 -1.44 16 24 C -0.18 -2.62 9.57 30.59 0.29 -2.33 16 25 H 0.08 1.22 6.98 -2.39 -0.02 1.21 16 26 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.10 1.06 7.07 -2.39 -0.02 1.04 16 28 H 0.40 3.33 9.04 -74.06 -0.67 2.66 16 29 H 0.43 7.45 8.18 -92.71 -0.76 6.69 16 30 H 0.13 4.90 6.45 -2.91 -0.02 4.88 16 31 H 0.11 5.21 8.06 -2.91 -0.02 5.18 16 32 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 33 H 0.13 5.55 5.71 -2.91 -0.02 5.53 16 34 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 35 H 0.09 1.98 7.95 -2.38 -0.02 1.96 16 36 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.11 1.13 7.61 -2.38 -0.02 1.11 16 38 H 0.11 1.44 5.85 -2.39 -0.01 1.42 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -76.04 329.32 2.29 -73.75 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.32 Total: 30.41 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: 3.96 Total: -31.88 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: -1.31 Total: -74.07 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -2.08 Total: -42.63 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -76.04 2.29 -73.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323982750.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.798 kcal (2) G-P(sol) polarization free energy of solvation -76.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds