Wall clock time and date at job start Tue Mar 31 2020 06:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47450 * 2 1 4 4 C 1.50704 * 109.47164 * 239.99517 * 2 1 3 5 5 O 1.21284 * 120.00330 * 265.00430 * 4 2 1 6 6 N 1.34774 * 119.99407 * 85.00226 * 4 2 1 7 7 C 1.39995 * 119.99776 * 175.48320 * 6 4 2 8 8 C 1.38919 * 120.00112 * 214.85302 * 7 6 4 9 9 C 1.38011 * 119.99625 * 179.76752 * 8 7 6 10 10 C 1.38905 * 119.99784 * 0.48305 * 9 8 7 11 11 O 1.35783 * 119.99537 * 179.74672 * 10 9 8 12 12 C 1.34816 * 117.00034 * 185.36761 * 11 10 9 13 13 H 1.08003 * 119.99871 * 354.96756 * 12 11 10 14 14 C 1.38626 * 119.99926 * 174.96311 * 12 11 10 15 15 N 1.31579 * 120.00344 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00105 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46973 * 59.99958 * 16 14 12 18 18 H 1.48502 * 109.47355 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47247 * 300.00312 * 16 14 12 20 20 C 1.38904 * 120.00645 * 359.76634 * 10 9 8 21 21 C 1.37997 * 120.00408 * 0.02562 * 20 10 9 22 22 C 1.53003 * 109.46635 * 120.00138 * 2 1 3 23 23 C 1.53002 * 117.51583 * 231.27879 * 22 2 1 24 24 C 1.53003 * 117.49859 * 299.90781 * 22 2 1 25 25 H 1.09002 * 109.46957 * 299.99900 * 1 2 3 26 26 H 1.08996 * 109.46710 * 60.00227 * 1 2 3 27 27 H 1.09001 * 109.46878 * 179.97438 * 1 2 3 28 28 H 0.96704 * 114.00027 * 179.97438 * 3 2 1 29 29 H 0.96998 * 120.00290 * 355.48735 * 6 4 2 30 30 H 1.07994 * 120.00253 * 359.97438 * 8 7 6 31 31 H 1.08001 * 119.99637 * 180.21275 * 9 8 7 32 32 H 0.96994 * 119.99965 * 179.97438 * 15 14 12 33 33 H 1.08008 * 119.99765 * 179.97438 * 20 10 9 34 34 H 1.07995 * 120.00444 * 179.97438 * 21 20 10 35 35 H 1.09002 * 115.55559 * 85.58495 * 22 2 1 36 36 H 1.09003 * 117.50384 * 214.97309 * 23 22 2 37 37 H 1.09001 * 117.50012 * 359.97438 * 23 22 2 38 38 H 1.08996 * 117.49655 * 359.97438 * 24 22 2 39 39 H 1.08997 * 117.49242 * 145.00248 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.3208 -1.8873 -1.1760 6 7 2.1611 -0.0382 -2.3914 7 6 2.7162 -0.6719 -3.5094 8 6 3.5004 0.0509 -4.3996 9 6 4.0515 -0.5751 -5.4992 10 6 3.8138 -1.9255 -5.7212 11 8 4.3518 -2.5401 -6.8058 12 6 3.9931 -3.8212 -7.0240 13 1 3.3719 -4.3376 -6.3072 14 6 4.4215 -4.4757 -8.1685 15 7 5.1787 -3.8467 -9.0417 16 14 3.9240 -6.2505 -8.4712 17 1 2.4434 -6.3453 -8.5367 18 1 4.5076 -6.7163 -9.7549 19 1 4.4258 -7.1014 -7.3624 20 6 3.0254 -2.6471 -4.8339 21 6 2.4778 -2.0224 -3.7321 22 6 2.0399 -0.7213 1.2493 23 6 3.0758 0.0037 2.1108 24 6 1.6373 -0.1483 2.6096 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.9705 1.4235 0.0004 29 1 1.8692 0.8849 -2.4522 30 1 3.6815 1.1019 -4.2294 31 1 4.6640 -0.0139 -6.1894 32 1 5.4787 -4.3047 -9.8423 33 1 2.8404 -3.6971 -5.0069 34 1 1.8645 -2.5833 -3.0425 35 1 2.1252 -1.8047 1.1648 36 1 3.8425 -0.6026 2.5932 37 1 3.3945 0.9947 1.7875 38 1 1.0096 0.7427 2.6146 39 1 1.4578 -0.8548 3.4200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323982751.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:33 Heat of formation + Delta-G solvation = -54.865397 kcal Electronic energy + Delta-G solvation = -22684.794030 eV Core-core repulsion = 19173.425832 eV Total energy + Delta-G solvation = -3511.368197 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.76074 -39.10525 -38.09184 -36.44063 -35.52682 -33.82326 -32.19271 -31.36404 -30.21988 -27.99883 -25.50466 -24.97150 -22.73547 -22.56089 -21.96329 -20.61813 -19.90217 -18.53840 -17.88390 -17.41437 -16.91903 -16.33653 -15.37891 -15.19220 -14.68700 -14.49162 -14.27462 -13.71901 -13.62232 -13.49721 -13.24589 -12.88751 -12.76431 -12.60718 -12.51919 -12.05293 -11.74853 -11.70914 -11.57955 -11.51116 -11.02214 -10.99776 -10.76136 -10.64689 -10.45532 -10.43534 -9.69921 -9.50609 -9.14192 -8.70498 -8.22274 -6.95903 -6.45052 -4.02843 2.01781 2.19176 2.72676 3.09574 3.14708 3.16654 3.18143 3.50069 3.79062 3.97539 4.31289 4.46617 4.55495 4.62083 4.80084 5.04343 5.09094 5.09904 5.25025 5.34484 5.44072 5.45869 5.61545 5.66158 5.73297 5.81280 5.85115 5.95839 6.12658 6.16933 6.31783 6.70907 6.81862 6.97082 7.04739 7.13543 7.28782 7.42669 7.67093 7.76756 7.99927 8.30202 9.00566 9.69551 10.72764 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.031295 B = 0.003132 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.508429 B = 8938.333602 C = 9374.977836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.153 3.847 3 O -0.550 6.550 4 C 0.484 3.516 5 O -0.520 6.520 6 N -0.650 5.650 7 C 0.029 3.971 8 C -0.091 4.091 9 C -0.178 4.178 10 C 0.147 3.853 11 O -0.176 6.176 12 C -0.392 4.392 13 H 0.092 0.908 14 C 0.040 3.960 15 N -0.863 5.863 16 Si 0.941 3.059 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.269 1.269 20 C -0.221 4.221 21 C -0.064 4.064 22 C -0.175 4.175 23 C -0.177 4.177 24 C -0.165 4.165 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.382 0.618 29 H 0.406 0.594 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.271 0.729 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.525 9.284 18.426 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.109 3.891 3 O -0.357 6.357 4 C 0.269 3.731 5 O -0.395 6.395 6 N -0.295 5.295 7 C -0.063 4.063 8 C -0.111 4.111 9 C -0.198 4.198 10 C 0.093 3.907 11 O -0.079 6.079 12 C -0.468 4.468 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.498 5.498 16 Si 0.765 3.235 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.195 1.195 20 C -0.241 4.241 21 C -0.084 4.084 22 C -0.194 4.194 23 C -0.214 4.214 24 C -0.202 4.202 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.231 0.769 29 H 0.242 0.758 30 H 0.133 0.867 31 H 0.140 0.860 32 H 0.080 0.920 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.671 8.596 18.078 21.437 hybrid contribution 0.271 -0.614 -0.177 0.694 sum -7.400 7.982 17.901 20.951 Atomic orbital electron populations 1.21720 0.90159 1.03518 1.03703 1.20816 0.96274 0.81502 0.90558 1.86547 1.27552 1.24874 1.96724 1.21255 0.78832 0.88059 0.84917 1.90706 1.48394 1.15595 1.84822 1.43195 1.60921 1.16174 1.09223 1.17298 1.04576 0.93475 0.90935 1.20364 0.97147 0.98685 0.94951 1.19999 1.06870 0.92587 1.00358 1.19412 0.91427 0.91740 0.88110 1.83975 1.59142 1.26985 1.37803 1.21295 1.33230 0.85252 1.06995 0.89062 1.25283 0.96314 1.00247 0.94619 1.70036 1.32209 1.37269 1.10268 0.85782 0.79037 0.80433 0.78209 1.19460 1.20268 1.19455 1.21106 1.04883 1.01213 0.96906 1.20844 0.98360 0.93145 0.96027 1.22841 1.04871 1.00966 0.90700 1.22989 0.92814 1.02014 1.03579 1.22920 0.97980 1.03086 0.96213 0.90544 0.91283 0.90233 0.76862 0.75838 0.86695 0.86016 0.91953 0.85196 0.85794 0.85672 0.88535 0.88326 0.88340 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 8.67 37.16 0.32 -0.87 16 2 C 0.15 1.56 1.12 -91.77 -0.10 1.46 16 3 O -0.55 -4.80 11.50 -35.23 -0.41 -5.21 16 4 C 0.48 6.79 6.54 -10.98 -0.07 6.72 16 5 O -0.52 -9.30 13.24 5.55 0.07 -9.23 16 6 N -0.65 -8.99 5.22 -9.82 -0.05 -9.04 16 7 C 0.03 0.52 6.30 -83.62 -0.53 0.00 16 8 C -0.09 -1.60 9.96 -39.41 -0.39 -1.99 16 9 C -0.18 -3.72 9.99 -39.42 -0.39 -4.11 16 10 C 0.15 3.59 6.65 -39.09 -0.26 3.33 16 11 O -0.18 -5.04 9.76 -0.01 0.00 -5.04 16 12 C -0.39 -11.04 9.48 30.88 0.29 -10.75 16 13 H 0.09 2.40 5.20 -52.48 -0.27 2.12 16 14 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 15 N -0.86 -25.36 13.67 55.48 0.76 -24.61 16 16 Si 0.94 20.71 29.55 -169.99 -5.02 15.68 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 C -0.22 -5.03 9.16 -39.42 -0.36 -5.39 16 21 C -0.06 -1.30 8.69 -39.41 -0.34 -1.64 16 22 C -0.17 -1.73 4.96 -90.62 -0.45 -2.18 16 23 C -0.18 -1.45 9.74 -26.73 -0.26 -1.71 16 24 C -0.17 -1.29 9.67 -26.73 -0.26 -1.54 16 25 H 0.08 0.58 7.29 -51.93 -0.38 0.20 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.38 2.59 7.55 45.56 0.34 2.94 16 29 H 0.41 4.43 8.33 -40.82 -0.34 4.09 16 30 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.13 2.97 5.63 -52.48 -0.30 2.67 16 34 H 0.12 2.49 6.23 -52.49 -0.33 2.16 16 35 H 0.13 1.48 7.33 -51.93 -0.38 1.10 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.70 6.38 -51.93 -0.33 0.36 16 38 H 0.10 0.72 7.61 -51.93 -0.40 0.33 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 329.22 15.07 4.96 4.96 Total: -1.00 -32.65 329.22 -6.64 -39.29 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -4.05 Total: 10.87 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -2.90 Total: -17.69 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.71 Total: -33.65 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.33 Total: -19.47 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.65 -6.64 -39.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323982751.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.575 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds