Wall clock time and date at job start Tue Mar 31 2020 06:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47450 * 2 1 4 4 C 1.50704 * 109.47164 * 239.99517 * 2 1 3 5 5 O 1.21284 * 120.00330 * 265.00430 * 4 2 1 6 6 N 1.34774 * 119.99407 * 85.00226 * 4 2 1 7 7 C 1.39995 * 119.99776 * 175.48320 * 6 4 2 8 8 C 1.38919 * 120.00112 * 214.85302 * 7 6 4 9 9 C 1.38011 * 119.99625 * 179.76752 * 8 7 6 10 10 C 1.38905 * 119.99784 * 0.48305 * 9 8 7 11 11 O 1.35783 * 119.99537 * 179.74672 * 10 9 8 12 12 C 1.34816 * 117.00034 * 185.36761 * 11 10 9 13 13 H 1.08003 * 119.99871 * 354.96756 * 12 11 10 14 14 C 1.38626 * 119.99926 * 174.96311 * 12 11 10 15 15 N 1.31579 * 120.00344 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00105 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46973 * 59.99958 * 16 14 12 18 18 H 1.48502 * 109.47355 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47247 * 300.00312 * 16 14 12 20 20 C 1.38904 * 120.00645 * 359.76634 * 10 9 8 21 21 C 1.37997 * 120.00408 * 0.02562 * 20 10 9 22 22 C 1.53003 * 109.46635 * 120.00138 * 2 1 3 23 23 C 1.53002 * 117.51583 * 231.27879 * 22 2 1 24 24 C 1.53003 * 117.49859 * 299.90781 * 22 2 1 25 25 H 1.09002 * 109.46957 * 299.99900 * 1 2 3 26 26 H 1.08996 * 109.46710 * 60.00227 * 1 2 3 27 27 H 1.09001 * 109.46878 * 179.97438 * 1 2 3 28 28 H 0.96704 * 114.00027 * 179.97438 * 3 2 1 29 29 H 0.96998 * 120.00290 * 355.48735 * 6 4 2 30 30 H 1.07994 * 120.00253 * 359.97438 * 8 7 6 31 31 H 1.08001 * 119.99637 * 180.21275 * 9 8 7 32 32 H 0.96994 * 119.99965 * 179.97438 * 15 14 12 33 33 H 1.08008 * 119.99765 * 179.97438 * 20 10 9 34 34 H 1.07995 * 120.00444 * 179.97438 * 21 20 10 35 35 H 1.09002 * 115.55559 * 85.58495 * 22 2 1 36 36 H 1.09003 * 117.50384 * 214.97309 * 23 22 2 37 37 H 1.09001 * 117.50012 * 359.97438 * 23 22 2 38 38 H 1.08996 * 117.49655 * 359.97438 * 24 22 2 39 39 H 1.08997 * 117.49242 * 145.00248 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.3208 -1.8873 -1.1760 6 7 2.1611 -0.0382 -2.3914 7 6 2.7162 -0.6719 -3.5094 8 6 3.5004 0.0509 -4.3996 9 6 4.0515 -0.5751 -5.4992 10 6 3.8138 -1.9255 -5.7212 11 8 4.3518 -2.5401 -6.8058 12 6 3.9931 -3.8212 -7.0240 13 1 3.3719 -4.3376 -6.3072 14 6 4.4215 -4.4757 -8.1685 15 7 5.1787 -3.8467 -9.0417 16 14 3.9240 -6.2505 -8.4712 17 1 2.4434 -6.3453 -8.5367 18 1 4.5076 -6.7163 -9.7549 19 1 4.4258 -7.1014 -7.3624 20 6 3.0254 -2.6471 -4.8339 21 6 2.4778 -2.0224 -3.7321 22 6 2.0399 -0.7213 1.2493 23 6 3.0758 0.0037 2.1108 24 6 1.6373 -0.1483 2.6096 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.9705 1.4235 0.0004 29 1 1.8692 0.8849 -2.4522 30 1 3.6815 1.1019 -4.2294 31 1 4.6640 -0.0139 -6.1894 32 1 5.4787 -4.3047 -9.8423 33 1 2.8404 -3.6971 -5.0069 34 1 1.8645 -2.5833 -3.0425 35 1 2.1252 -1.8047 1.1648 36 1 3.8425 -0.6026 2.5932 37 1 3.3945 0.9947 1.7875 38 1 1.0096 0.7427 2.6146 39 1 1.4578 -0.8548 3.4200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323982751.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:32 Heat of formation + Delta-G solvation = -78.399573 kcal Electronic energy + Delta-G solvation = -22685.814548 eV Core-core repulsion = 19173.425832 eV Total energy + Delta-G solvation = -3512.388716 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.90455 -40.66627 -39.30014 -38.01888 -36.30727 -35.21867 -34.16349 -32.18074 -31.87831 -29.57589 -27.35906 -25.98579 -24.15664 -23.50785 -23.17840 -21.94037 -20.84319 -20.05677 -19.42516 -18.78257 -18.17903 -17.59918 -16.64645 -16.40734 -16.25593 -15.79747 -15.52449 -15.46606 -15.28042 -14.69868 -14.54394 -14.12989 -14.02721 -13.58350 -13.48010 -13.31998 -13.27595 -13.18081 -12.82977 -12.69745 -12.46403 -12.31134 -12.15915 -11.79640 -11.43177 -11.36251 -11.14327 -11.05672 -10.60679 -10.44808 -9.86692 -8.65589 -8.48473 -6.15624 0.46317 0.51806 1.34028 1.41092 1.49730 1.51281 1.96843 2.17040 2.78138 2.81822 3.05575 3.12660 3.47843 3.52209 3.58097 3.91337 4.04788 4.09072 4.11508 4.33247 4.38274 4.45366 4.62373 4.69643 4.73366 4.79959 4.81120 4.99652 5.05451 5.09736 5.16305 5.22458 5.27633 5.31860 5.41089 5.55672 5.67352 6.00146 6.11172 6.32982 6.59744 6.95928 7.13598 7.74682 8.74027 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.031295 B = 0.003132 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.508429 B = 8938.333602 C = 9374.977836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.169 3.831 3 O -0.542 6.542 4 C 0.483 3.517 5 O -0.559 6.559 6 N -0.640 5.640 7 C 0.057 3.943 8 C -0.075 4.075 9 C -0.180 4.180 10 C 0.108 3.892 11 O -0.226 6.226 12 C -0.416 4.416 13 H 0.097 0.903 14 C -0.019 4.019 15 N -0.918 5.918 16 Si 1.016 2.984 17 H -0.258 1.258 18 H -0.268 1.268 19 H -0.260 1.260 20 C -0.230 4.230 21 C -0.076 4.076 22 C -0.197 4.197 23 C -0.175 4.175 24 C -0.148 4.148 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.393 0.607 29 H 0.426 0.574 30 H 0.167 0.833 31 H 0.130 0.870 32 H 0.274 0.726 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.831 11.273 21.019 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.125 3.875 3 O -0.351 6.351 4 C 0.271 3.729 5 O -0.437 6.437 6 N -0.287 5.287 7 C -0.036 4.036 8 C -0.095 4.095 9 C -0.200 4.200 10 C 0.057 3.943 11 O -0.133 6.133 12 C -0.492 4.492 13 H 0.114 0.886 14 C -0.217 4.217 15 N -0.556 5.556 16 Si 0.835 3.165 17 H -0.182 1.182 18 H -0.193 1.193 19 H -0.185 1.185 20 C -0.250 4.250 21 C -0.096 4.096 22 C -0.216 4.216 23 C -0.212 4.212 24 C -0.185 4.185 25 H 0.114 0.886 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.244 0.756 29 H 0.265 0.735 30 H 0.184 0.816 31 H 0.148 0.852 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.143 0.857 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.005 10.655 20.737 24.993 hybrid contribution 0.593 -0.984 -0.656 1.322 sum -8.412 9.672 20.082 23.824 Atomic orbital electron populations 1.21779 0.88979 1.03569 1.04945 1.20625 0.96906 0.81685 0.88278 1.86557 1.28678 1.23379 1.96463 1.22145 0.77349 0.87654 0.85793 1.90704 1.49787 1.17717 1.85492 1.43167 1.60518 1.16975 1.08018 1.17453 1.02309 0.92572 0.91316 1.20790 0.95022 1.00835 0.92864 1.20340 1.06765 0.91336 1.01515 1.19936 0.92970 0.93363 0.87990 1.83938 1.61712 1.27450 1.40153 1.21737 1.33848 0.85863 1.07769 0.88558 1.26527 0.96061 1.05158 0.93949 1.70168 1.34535 1.39583 1.11265 0.84693 0.79168 0.74170 0.78481 1.18232 1.19255 1.18455 1.21101 1.05305 1.00863 0.97706 1.20921 0.98721 0.94651 0.95339 1.22725 1.07365 0.99751 0.91733 1.23121 0.93032 1.02375 1.02657 1.23000 0.97706 1.03162 0.94643 0.88616 0.90762 0.90862 0.75633 0.73464 0.81554 0.85234 0.91718 0.86537 0.85714 0.88268 0.88609 0.86794 0.87197 0.87897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.67 71.98 0.62 -1.38 16 2 C 0.17 2.97 1.12 -11.54 -0.01 2.95 16 3 O -0.54 -7.13 11.50 -148.98 -1.71 -8.85 16 4 C 0.48 12.47 6.54 87.66 0.57 13.04 16 5 O -0.56 -19.61 13.24 -3.04 -0.04 -19.65 16 6 N -0.64 -15.56 5.22 -303.37 -1.58 -17.14 16 7 C 0.06 1.90 6.30 38.17 0.24 2.14 16 8 C -0.08 -2.41 9.96 22.38 0.22 -2.18 16 9 C -0.18 -7.42 9.99 22.38 0.22 -7.19 16 10 C 0.11 5.47 6.65 22.59 0.15 5.63 16 11 O -0.23 -13.73 9.76 -22.96 -0.22 -13.96 16 12 C -0.42 -24.78 9.48 67.91 0.64 -24.14 16 13 H 0.10 5.37 5.20 -2.91 -0.02 5.35 16 14 C -0.02 -1.10 5.49 84.82 0.47 -0.63 16 15 N -0.92 -56.56 13.67 21.61 0.30 -56.26 16 16 Si 1.02 43.73 29.55 68.60 2.03 45.76 16 17 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 20 C -0.23 -10.84 9.16 22.37 0.20 -10.63 16 21 C -0.08 -3.09 8.69 22.38 0.19 -2.89 16 22 C -0.20 -3.48 4.96 -10.79 -0.05 -3.54 16 23 C -0.18 -2.37 9.74 30.60 0.30 -2.07 16 24 C -0.15 -1.84 9.67 30.60 0.30 -1.55 16 25 H 0.10 1.07 7.29 -2.39 -0.02 1.06 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.39 3.56 7.55 -74.05 -0.56 3.00 16 29 H 0.43 7.30 8.33 -92.71 -0.77 6.53 16 30 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 31 H 0.13 5.08 8.06 -2.91 -0.02 5.05 16 32 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16 33 H 0.12 5.67 5.63 -2.91 -0.02 5.65 16 34 H 0.13 5.03 6.23 -2.91 -0.02 5.02 16 35 H 0.10 2.31 7.33 -2.39 -0.02 2.29 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.11 1.17 6.38 -2.39 -0.02 1.15 16 38 H 0.11 1.15 7.61 -2.39 -0.02 1.13 16 39 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -76.02 329.22 2.61 -73.42 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -0.22 Total: 29.13 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 4.07 Total: -32.45 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -1.29 Total: -73.41 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -1.98 Total: -42.45 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -76.02 2.61 -73.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323982751.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.984 kcal (2) G-P(sol) polarization free energy of solvation -76.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds