Wall clock time and date at job start Tue Mar 31 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34754 * 116.99955 * 2 1 4 4 O 1.21505 * 119.99730 * 0.02562 * 3 2 1 5 5 C 1.47461 * 120.00468 * 180.02562 * 3 2 1 6 6 C 1.39833 * 120.07397 * 359.97438 * 5 3 2 7 7 C 1.37625 * 119.91965 * 180.02562 * 6 5 3 8 8 C 1.39171 * 120.07734 * 0.02562 * 7 6 5 9 9 N 1.39413 * 119.91937 * 180.28433 * 8 7 6 10 10 C 1.34776 * 119.99812 * 325.16937 * 9 8 7 11 11 O 1.21271 * 120.00177 * 4.54879 * 10 9 8 12 12 C 1.50702 * 119.99767 * 184.55029 * 10 9 8 13 13 C 1.53000 * 109.47008 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47241 * 179.97438 * 13 12 10 15 15 H 1.08007 * 120.00110 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00287 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99890 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00146 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46829 * 0.02562 * 18 16 14 20 20 H 1.48492 * 109.46960 * 120.00611 * 18 16 14 21 21 H 1.48502 * 109.46806 * 240.00321 * 18 16 14 22 22 C 1.39125 * 120.15809 * 0.02562 * 8 7 6 23 23 C 1.50706 * 119.95871 * 179.97438 * 22 8 7 24 24 C 1.37671 * 120.08238 * 359.97144 * 22 8 7 25 25 H 1.09007 * 109.46673 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47097 * 299.99390 * 1 2 3 27 27 H 1.08997 * 109.47793 * 59.99909 * 1 2 3 28 28 H 1.07998 * 120.04126 * 0.02562 * 6 5 3 29 29 H 1.07997 * 119.96263 * 180.02562 * 7 6 5 30 30 H 0.97000 * 120.00033 * 145.17376 * 9 8 7 31 31 H 1.09007 * 109.46672 * 299.99701 * 12 10 9 32 32 H 1.08993 * 109.47457 * 59.99617 * 12 10 9 33 33 H 1.08997 * 109.46842 * 299.99463 * 13 12 10 34 34 H 1.08998 * 109.47139 * 59.99706 * 13 12 10 35 35 H 0.97001 * 119.99998 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.47060 * 90.00510 * 23 22 8 37 37 H 1.09003 * 109.46983 * 209.99808 * 23 22 8 38 38 H 1.08993 * 109.47416 * 330.00119 * 23 22 8 39 39 H 1.07998 * 120.04190 * 180.02562 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5363 1.2780 -0.0006 6 6 4.2995 0.1063 -0.0006 7 6 5.6736 0.1821 -0.0006 8 6 6.3037 1.4231 0.0000 9 7 7.6959 1.4961 -0.0060 10 6 8.4219 0.5728 0.6549 11 8 7.8692 -0.3673 1.1854 12 6 9.9207 0.7087 0.7348 13 6 10.4970 -0.4618 1.5340 14 6 11.9958 -0.3263 1.6133 15 1 12.4881 0.5112 1.1413 16 6 12.7386 -1.2709 2.2894 17 7 12.1391 -2.2904 2.8646 18 14 14.5964 -1.1025 2.3883 19 1 15.0215 0.1228 1.6652 20 1 15.0095 -1.0055 3.8113 21 1 15.2348 -2.2909 1.7675 22 6 5.5475 2.5909 0.0010 23 6 6.2344 3.9323 0.0022 24 6 4.1725 2.5226 0.0010 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 3.8112 -0.8570 -0.0006 29 1 6.2638 -0.7223 -0.0010 30 1 8.1420 2.2114 -0.4858 31 1 10.3401 0.7027 -0.2713 32 1 10.1747 1.6464 1.2287 33 1 10.0776 -0.4563 2.5400 34 1 10.2430 -1.3994 1.0395 35 1 12.6618 -2.9552 3.3399 36 1 6.3999 4.2566 -1.0252 37 1 5.6079 4.6609 0.5167 38 1 7.1922 3.8496 0.5159 39 1 3.5861 3.4296 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324738029.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:13 Heat of formation + Delta-G solvation = -108.207421 kcal Electronic energy + Delta-G solvation = -22026.491571 eV Core-core repulsion = 18512.810290 eV Total energy + Delta-G solvation = -3513.681281 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.89596 -40.22335 -38.40429 -36.57809 -34.83330 -33.60344 -32.82823 -31.37349 -30.13316 -28.11095 -27.03987 -25.89821 -24.02671 -22.33951 -21.77781 -20.61372 -19.84752 -17.82384 -17.73530 -17.09622 -16.96699 -16.52040 -15.89578 -15.51557 -14.80892 -14.51914 -14.38306 -14.11350 -14.01011 -13.49327 -13.47197 -13.37122 -12.91582 -12.62319 -12.32258 -12.27191 -12.07306 -12.05564 -11.41151 -11.25445 -11.02601 -11.00720 -10.71778 -10.64602 -10.33701 -10.08459 -9.78431 -9.36065 -9.15485 -8.91330 -8.40084 -8.20178 -6.03129 -4.08058 0.54825 1.25193 2.33128 2.51375 2.95151 3.17431 3.28527 3.36240 3.39001 3.68035 4.41686 4.57997 4.59816 4.72374 4.85389 4.92966 5.01855 5.08693 5.21717 5.23894 5.32317 5.40504 5.42498 5.52251 5.76115 5.91363 6.01727 6.04546 6.04615 6.18809 6.19985 6.26420 6.41735 6.72696 6.88487 7.48914 7.57257 7.65805 7.74086 7.97448 8.26435 8.43607 8.99843 9.56221 11.07760 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.032187 B = 0.002716 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.696709 B =10304.979965 C =11041.099107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.515 3.485 4 O -0.515 6.515 5 C -0.158 4.158 6 C -0.044 4.044 7 C -0.138 4.138 8 C 0.199 3.801 9 N -0.683 5.683 10 C 0.509 3.491 11 O -0.506 6.506 12 C -0.129 4.129 13 C 0.036 3.964 14 C -0.529 4.529 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.136 4.136 23 C -0.113 4.113 24 C -0.033 4.033 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.139 0.861 29 H 0.152 0.848 30 H 0.412 0.588 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.235 9.547 -8.617 22.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.361 3.639 4 O -0.405 6.405 5 C -0.160 4.160 6 C -0.062 4.062 7 C -0.158 4.158 8 C 0.102 3.898 9 N -0.329 5.329 10 C 0.299 3.701 11 O -0.379 6.379 12 C -0.169 4.169 13 C -0.002 4.002 14 C -0.567 4.567 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.527 5.527 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.138 4.138 23 C -0.170 4.170 24 C -0.052 4.052 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.157 0.843 29 H 0.170 0.830 30 H 0.248 0.752 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.715 8.960 -8.083 22.268 hybrid contribution 0.956 0.402 -0.082 1.040 sum -17.759 9.361 -8.165 21.672 Atomic orbital electron populations 1.23267 0.76127 1.03742 1.02530 1.86571 1.23438 1.32759 1.84378 1.21181 0.89169 0.81286 0.72282 1.90816 1.66939 1.36037 1.46703 1.18954 0.88683 0.95007 1.13324 1.21337 0.93281 0.97839 0.93793 1.21406 0.94376 0.98005 1.02040 1.18006 0.83682 0.93389 0.94731 1.43985 1.03938 1.31927 1.53014 1.21955 0.91421 0.80725 0.75967 1.90678 1.72826 1.30450 1.43933 1.21939 0.86803 1.04522 1.03594 1.18932 0.94758 0.91228 0.95240 1.21217 0.91804 1.09222 1.34460 0.92463 1.25028 0.98649 0.95276 0.95414 1.70001 1.35491 1.12294 1.34911 0.86520 0.85557 0.78012 0.77788 1.19731 1.20983 1.20970 1.19601 0.93092 0.94718 1.06426 1.20725 1.00811 0.92903 1.02520 1.20839 0.93051 0.96646 0.94670 0.87980 0.91870 0.91900 0.84282 0.83039 0.75178 0.89639 0.89652 0.95674 0.95654 0.92911 0.90964 0.90925 0.91180 0.84445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.96 9.81 -40.64 -0.40 -4.36 16 3 C 0.51 6.59 7.89 34.49 0.27 6.86 16 4 O -0.52 -7.47 16.13 -19.27 -0.31 -7.78 16 5 C -0.16 -1.99 5.87 -104.97 -0.62 -2.60 16 6 C -0.04 -0.55 9.60 -39.21 -0.38 -0.93 16 7 C -0.14 -1.97 8.68 -39.46 -0.34 -2.32 16 8 C 0.20 2.66 6.28 -83.74 -0.53 2.14 16 9 N -0.68 -8.92 4.72 -9.86 -0.05 -8.96 16 10 C 0.51 8.90 7.67 -10.98 -0.08 8.81 16 11 O -0.51 -10.83 13.37 5.56 0.07 -10.75 16 12 C -0.13 -2.38 5.64 -27.88 -0.16 -2.53 16 13 C 0.04 0.92 4.26 -27.88 -0.12 0.80 16 14 C -0.53 -14.43 9.11 -34.44 -0.31 -14.74 16 15 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 18 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 C -0.14 -1.54 5.89 -104.50 -0.62 -2.16 16 23 C -0.11 -0.94 9.46 36.01 0.34 -0.60 16 24 C -0.03 -0.39 9.23 -39.21 -0.36 -0.75 16 25 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.14 1.53 7.60 -52.49 -0.40 1.13 16 29 H 0.15 2.43 6.17 -52.49 -0.32 2.11 16 30 H 0.41 3.93 7.83 -40.82 -0.32 3.61 16 31 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 32 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 38 H 0.07 0.58 7.17 -51.93 -0.37 0.21 16 39 H 0.14 1.45 7.64 -52.49 -0.40 1.05 16 LS Contribution 339.37 15.07 5.11 5.11 Total: -1.00 -34.06 339.37 -6.94 -40.99 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.15 Total: 0.73 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.93 Total: -5.11 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.69 Total: -34.95 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.63 Total: -22.89 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.06 -6.94 -40.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324738029.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.214 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds