Wall clock time and date at job start Tue Mar 31 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34754 * 116.99955 * 2 1 4 4 O 1.21505 * 119.99730 * 0.02562 * 3 2 1 5 5 C 1.47461 * 120.00468 * 180.02562 * 3 2 1 6 6 C 1.39833 * 120.07397 * 359.97438 * 5 3 2 7 7 C 1.37625 * 119.91965 * 180.02562 * 6 5 3 8 8 C 1.39171 * 120.07734 * 0.02562 * 7 6 5 9 9 N 1.39413 * 119.91937 * 180.28433 * 8 7 6 10 10 C 1.34776 * 119.99812 * 325.16937 * 9 8 7 11 11 O 1.21271 * 120.00177 * 4.54879 * 10 9 8 12 12 C 1.50702 * 119.99767 * 184.55029 * 10 9 8 13 13 C 1.53000 * 109.47008 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47241 * 179.97438 * 13 12 10 15 15 H 1.08007 * 120.00110 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00287 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99890 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00146 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46829 * 0.02562 * 18 16 14 20 20 H 1.48492 * 109.46960 * 120.00611 * 18 16 14 21 21 H 1.48502 * 109.46806 * 240.00321 * 18 16 14 22 22 C 1.39125 * 120.15809 * 0.02562 * 8 7 6 23 23 C 1.50706 * 119.95871 * 179.97438 * 22 8 7 24 24 C 1.37671 * 120.08238 * 359.97144 * 22 8 7 25 25 H 1.09007 * 109.46673 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47097 * 299.99390 * 1 2 3 27 27 H 1.08997 * 109.47793 * 59.99909 * 1 2 3 28 28 H 1.07998 * 120.04126 * 0.02562 * 6 5 3 29 29 H 1.07997 * 119.96263 * 180.02562 * 7 6 5 30 30 H 0.97000 * 120.00033 * 145.17376 * 9 8 7 31 31 H 1.09007 * 109.46672 * 299.99701 * 12 10 9 32 32 H 1.08993 * 109.47457 * 59.99617 * 12 10 9 33 33 H 1.08997 * 109.46842 * 299.99463 * 13 12 10 34 34 H 1.08998 * 109.47139 * 59.99706 * 13 12 10 35 35 H 0.97001 * 119.99998 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.47060 * 90.00510 * 23 22 8 37 37 H 1.09003 * 109.46983 * 209.99808 * 23 22 8 38 38 H 1.08993 * 109.47416 * 330.00119 * 23 22 8 39 39 H 1.07998 * 120.04190 * 180.02562 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5363 1.2780 -0.0006 6 6 4.2995 0.1063 -0.0006 7 6 5.6736 0.1821 -0.0006 8 6 6.3037 1.4231 0.0000 9 7 7.6959 1.4961 -0.0060 10 6 8.4219 0.5728 0.6549 11 8 7.8692 -0.3673 1.1854 12 6 9.9207 0.7087 0.7348 13 6 10.4970 -0.4618 1.5340 14 6 11.9958 -0.3263 1.6133 15 1 12.4881 0.5112 1.1413 16 6 12.7386 -1.2709 2.2894 17 7 12.1391 -2.2904 2.8646 18 14 14.5964 -1.1025 2.3883 19 1 15.0215 0.1228 1.6652 20 1 15.0095 -1.0055 3.8113 21 1 15.2348 -2.2909 1.7675 22 6 5.5475 2.5909 0.0010 23 6 6.2344 3.9323 0.0022 24 6 4.1725 2.5226 0.0010 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 3.8112 -0.8570 -0.0006 29 1 6.2638 -0.7223 -0.0010 30 1 8.1420 2.2114 -0.4858 31 1 10.3401 0.7027 -0.2713 32 1 10.1747 1.6464 1.2287 33 1 10.0776 -0.4563 2.5400 34 1 10.2430 -1.3994 1.0395 35 1 12.6618 -2.9552 3.3399 36 1 6.3999 4.2566 -1.0252 37 1 5.6079 4.6609 0.5167 38 1 7.1922 3.8496 0.5159 39 1 3.5861 3.4296 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324738029.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:12 Heat of formation + Delta-G solvation = -129.360612 kcal Electronic energy + Delta-G solvation = -22027.408842 eV Core-core repulsion = 18512.810290 eV Total energy + Delta-G solvation = -3514.598552 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.96144 -41.31987 -39.57338 -37.53177 -36.03813 -35.57947 -33.75434 -33.14676 -31.34340 -28.85637 -28.15924 -27.39281 -25.28063 -23.55709 -23.20348 -21.65791 -21.20157 -19.01972 -18.69420 -18.66727 -18.02225 -17.56697 -17.40421 -16.79123 -16.46403 -15.93663 -15.42500 -15.28244 -14.89904 -14.76131 -14.44866 -14.27518 -14.20532 -14.09048 -13.72243 -13.24617 -13.03652 -12.99587 -12.84947 -12.84346 -12.44429 -12.37409 -11.92855 -11.83963 -11.74147 -11.63866 -11.49090 -11.26868 -10.78484 -10.56592 -9.89593 -9.26932 -8.17637 -6.30980 -0.47834 0.28178 1.25160 1.43933 1.44521 1.57674 1.66611 1.67352 2.00788 2.44184 2.67872 3.16311 3.65882 3.70699 3.77922 3.89791 4.12848 4.22942 4.29157 4.32856 4.39306 4.49732 4.54599 4.63055 4.71858 4.83756 4.88591 5.03877 5.05662 5.17944 5.22607 5.25252 5.30503 5.39497 5.51946 5.63597 5.82428 5.86691 6.17668 6.37631 6.62086 6.87701 7.13033 7.39479 8.95058 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.032187 B = 0.002716 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.696709 B =10304.979965 C =11041.099107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.517 3.483 4 O -0.535 6.535 5 C -0.162 4.162 6 C -0.044 4.044 7 C -0.156 4.156 8 C 0.179 3.821 9 N -0.659 5.659 10 C 0.514 3.486 11 O -0.556 6.556 12 C -0.117 4.117 13 C 0.040 3.960 14 C -0.540 4.540 15 H 0.078 0.922 16 C -0.007 4.007 17 N -0.938 5.938 18 Si 0.971 3.029 19 H -0.252 1.252 20 H -0.283 1.283 21 H -0.282 1.282 22 C -0.121 4.121 23 C -0.114 4.114 24 C -0.035 4.035 25 H 0.132 0.868 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.149 0.851 29 H 0.127 0.873 30 H 0.431 0.569 31 H 0.113 0.887 32 H 0.112 0.888 33 H -0.016 1.016 34 H -0.014 1.014 35 H 0.262 0.738 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.886 12.081 -9.783 23.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.364 3.636 4 O -0.427 6.427 5 C -0.164 4.164 6 C -0.063 4.063 7 C -0.176 4.176 8 C 0.083 3.917 9 N -0.306 5.306 10 C 0.304 3.696 11 O -0.432 6.432 12 C -0.156 4.156 13 C 0.002 3.998 14 C -0.578 4.578 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.796 3.204 19 H -0.175 1.175 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.124 4.124 23 C -0.171 4.171 24 C -0.054 4.054 25 H 0.150 0.850 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.166 0.834 29 H 0.145 0.855 30 H 0.272 0.728 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.002 0.998 34 H 0.004 0.996 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.380 11.547 -9.295 23.613 hybrid contribution 0.691 -0.401 0.261 0.841 sum -17.689 11.146 -9.033 22.776 Atomic orbital electron populations 1.23600 0.74149 1.05877 1.02785 1.86563 1.25422 1.31877 1.83839 1.21191 0.89175 0.81476 0.71792 1.90800 1.67328 1.36694 1.47842 1.19126 0.88899 0.95370 1.13015 1.21368 0.92662 0.98593 0.93685 1.21312 0.94997 0.97826 1.03458 1.18129 0.83590 0.93864 0.96127 1.43525 1.03878 1.31197 1.51957 1.21684 0.91247 0.80751 0.75905 1.90679 1.73495 1.32679 1.46384 1.21686 0.87445 1.02368 1.04107 1.18717 0.94718 0.92589 0.93751 1.21743 0.92706 1.09513 1.33829 0.90374 1.26111 1.04419 0.94885 0.95059 1.70176 1.37774 1.13561 1.36262 0.85305 0.78624 0.78670 0.77841 1.17487 1.20867 1.20813 1.19874 0.92876 0.95389 1.04213 1.20856 1.00801 0.91104 1.04299 1.21090 0.93357 0.96843 0.94067 0.84995 0.91798 0.91488 0.83358 0.85508 0.72813 0.86864 0.86952 0.99780 0.99593 0.92923 0.88589 0.89590 0.90835 0.82932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.36 -7.73 9.81 -56.65 -0.56 -8.28 16 3 C 0.52 12.81 7.89 70.25 0.55 13.36 16 4 O -0.53 -14.98 16.13 19.82 0.32 -14.66 16 5 C -0.16 -3.96 5.87 -20.09 -0.12 -4.08 16 6 C -0.04 -1.13 9.60 22.51 0.22 -0.91 16 7 C -0.16 -4.57 8.68 22.35 0.19 -4.38 16 8 C 0.18 4.65 6.28 38.37 0.24 4.90 16 9 N -0.66 -16.30 4.72 -303.49 -1.43 -17.73 16 10 C 0.51 18.01 7.67 87.66 0.67 18.69 16 11 O -0.56 -25.01 13.37 -3.00 -0.04 -25.05 16 12 C -0.12 -4.20 5.64 29.85 0.17 -4.03 16 13 C 0.04 2.10 4.26 29.85 0.13 2.23 16 14 C -0.54 -29.46 9.11 25.60 0.23 -29.23 16 15 H 0.08 3.85 7.74 -2.91 -0.02 3.82 16 16 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 17 N -0.94 -58.29 13.29 21.45 0.28 -58.00 16 18 Si 0.97 43.23 29.54 68.60 2.03 45.25 16 19 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 C -0.12 -2.49 5.89 -19.78 -0.12 -2.61 16 23 C -0.11 -1.49 9.46 71.24 0.67 -0.82 16 24 C -0.03 -0.75 9.23 22.51 0.21 -0.55 16 25 H 0.13 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.15 3.35 7.60 -2.91 -0.02 3.33 16 29 H 0.13 4.38 6.17 -2.91 -0.02 4.36 16 30 H 0.43 6.98 7.83 -92.71 -0.73 6.26 16 31 H 0.11 3.46 8.14 -2.38 -0.02 3.44 16 32 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 33 H -0.02 -0.98 8.10 -2.39 -0.02 -1.00 16 34 H -0.01 -0.86 8.10 -2.39 -0.02 -0.88 16 35 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 0.95 8.08 -2.39 -0.02 0.93 16 38 H 0.07 0.94 7.17 -2.39 -0.02 0.93 16 39 H 0.15 2.85 7.64 -2.91 -0.02 2.83 16 Total: -1.00 -77.31 339.37 5.66 -71.65 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.35 Total: 12.60 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 4.71 Total: -5.78 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -1.15 Total: -75.73 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -0.28 Total: -47.98 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -77.31 5.66 -71.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324738029.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.712 kcal (2) G-P(sol) polarization free energy of solvation -77.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds