Wall clock time and date at job start Tue Mar 31 2020 06:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42906 * 109.46793 * 2 1 4 4 C 1.50697 * 109.46695 * 119.99322 * 2 1 3 5 5 O 1.21282 * 119.99997 * 96.19046 * 4 2 1 6 6 N 1.34776 * 120.00484 * 276.18627 * 4 2 1 7 7 C 1.47070 * 136.05364 * 359.63309 * 6 4 2 8 8 C 1.53758 * 87.88731 * 152.96235 * 7 6 4 9 9 O 1.42901 * 114.39624 * 272.67733 * 8 7 6 10 10 C 1.50699 * 114.26762 * 139.79181 * 8 7 6 11 11 H 1.07999 * 120.00138 * 266.47636 * 10 8 7 12 12 C 1.37877 * 119.99842 * 86.47575 * 10 8 7 13 13 N 1.31511 * 120.00035 * 179.97438 * 12 10 8 14 14 Si 1.86800 * 120.00074 * 0.02562 * 12 10 8 15 15 H 1.48501 * 109.47422 * 89.99906 * 14 12 10 16 16 H 1.48506 * 109.47098 * 210.00047 * 14 12 10 17 17 H 1.48499 * 109.47167 * 329.99542 * 14 12 10 18 18 C 1.47065 * 136.05984 * 180.02562 * 6 4 2 19 19 C 1.50693 * 109.47494 * 239.99763 * 2 1 3 20 20 C 1.38234 * 120.00023 * 127.26365 * 19 2 1 21 21 C 1.38244 * 119.99552 * 179.76277 * 20 19 2 22 22 C 1.38233 * 120.00095 * 0.51043 * 21 20 19 23 23 C 1.38231 * 119.99987 * 359.74753 * 22 21 20 24 24 C 1.38231 * 120.00191 * 359.97438 * 23 22 21 25 25 H 1.08994 * 109.47738 * 300.00226 * 1 2 3 26 26 H 1.09008 * 109.47115 * 60.00774 * 1 2 3 27 27 H 1.09003 * 109.46874 * 179.97438 * 1 2 3 28 28 H 0.96695 * 113.99879 * 179.97438 * 3 2 1 29 29 H 1.08993 * 113.47177 * 267.69405 * 7 6 4 30 30 H 1.09003 * 113.46814 * 38.13654 * 7 6 4 31 31 H 0.96698 * 114.00221 * 273.58840 * 9 8 7 32 32 H 0.97006 * 120.00415 * 179.97438 * 13 12 10 33 33 H 1.08998 * 113.47231 * 321.86785 * 18 6 4 34 34 H 1.09005 * 113.46809 * 92.30921 * 18 6 4 35 35 H 1.07997 * 119.99927 * 359.97438 * 20 19 2 36 36 H 1.08003 * 119.99647 * 180.22576 * 21 20 19 37 37 H 1.08001 * 120.00009 * 179.71709 * 22 21 20 38 38 H 1.08001 * 120.00094 * 179.97438 * 23 22 21 39 39 H 1.08001 * 120.00049 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0322 -0.7103 1.2305 5 8 2.3411 -1.8816 1.1710 6 7 2.1383 -0.0439 2.3973 7 6 1.8813 1.3282 2.8602 8 6 1.6382 0.7485 4.2634 9 8 0.2939 0.3273 4.5033 10 6 2.2117 1.5772 5.3838 11 1 3.1983 1.3602 5.7657 12 6 1.4768 2.6126 5.9213 13 7 1.9770 3.3355 6.8994 14 14 -0.2300 2.9875 5.2613 15 1 -1.2378 2.2065 6.0227 16 1 -0.5113 4.4379 5.4115 17 1 -0.2979 2.6163 3.8251 18 6 2.5684 -0.3670 3.7660 19 6 2.0324 -0.7104 -1.2303 20 6 2.9462 -0.0903 -2.0618 21 6 3.4108 -0.7441 -3.1878 22 6 2.9535 -2.0136 -3.4880 23 6 2.0357 -2.6315 -2.6594 24 6 1.5755 -1.9801 -1.5304 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 2.9702 1.4237 0.0004 29 1 2.7558 1.9763 2.8039 30 1 0.9936 1.7775 2.4148 31 1 -0.2892 1.0323 4.8164 32 1 1.4601 4.0642 7.2774 33 1 2.2663 -1.3621 4.0925 34 1 3.6240 -0.1654 3.9483 35 1 3.2998 0.9034 -1.8298 36 1 4.1275 -0.2610 -3.8355 37 1 3.3130 -2.5225 -4.3702 38 1 1.6781 -3.6232 -2.8941 39 1 0.8581 -2.4628 -0.8832 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325792858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:20 Heat of formation + Delta-G solvation = -45.063798 kcal Electronic energy + Delta-G solvation = -23875.335399 eV Core-core repulsion = 20364.392231 eV Total energy + Delta-G solvation = -3510.943168 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.60995 -39.29474 -37.74228 -36.58294 -34.59672 -32.57253 -32.35476 -30.87043 -29.75286 -28.70399 -25.83589 -25.27186 -24.14224 -22.52981 -21.68221 -20.12230 -19.05673 -18.05642 -17.48356 -16.84475 -16.35508 -15.82146 -15.60542 -15.35141 -14.75420 -14.44961 -13.89623 -13.79656 -13.55709 -13.41849 -13.12421 -12.84401 -12.79618 -12.48176 -12.40335 -12.21104 -12.14688 -11.88720 -11.51756 -11.17497 -11.07719 -10.95626 -10.66075 -10.56499 -10.12850 -9.64262 -9.27023 -9.06884 -8.91889 -8.79742 -8.63362 -8.08409 -6.44961 -4.51118 1.24712 1.38282 2.86508 2.97950 3.02846 3.13896 3.23480 3.78056 4.00991 4.08319 4.49975 4.57052 4.75244 4.82275 4.92993 5.04353 5.05115 5.17248 5.43299 5.49139 5.56325 5.70072 5.71183 5.87612 5.96657 5.98663 6.05848 6.15356 6.27318 6.35168 6.38472 6.42512 6.45817 6.52371 6.58259 6.92949 7.15962 7.39084 7.98000 8.23850 8.46327 8.51490 8.58367 9.12551 10.67138 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.032112 B = 0.004323 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.747886 B = 6474.716290 C = 6572.538985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.167 3.833 3 O -0.538 6.538 4 C 0.513 3.487 5 O -0.547 6.547 6 N -0.625 5.625 7 C 0.072 3.928 8 C 0.193 3.807 9 O -0.550 6.550 10 C -0.534 4.534 11 H 0.092 0.908 12 C 0.081 3.919 13 N -0.875 5.875 14 Si 0.858 3.142 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.256 1.256 18 C 0.119 3.881 19 C -0.099 4.099 20 C -0.109 4.109 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.124 4.124 24 C -0.078 4.078 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.379 0.621 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.352 0.648 32 H 0.271 0.729 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.697 -4.392 -17.079 17.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.123 3.877 3 O -0.344 6.344 4 C 0.301 3.699 5 O -0.426 6.426 6 N -0.358 5.358 7 C -0.051 4.051 8 C 0.152 3.848 9 O -0.362 6.362 10 C -0.572 4.572 11 H 0.110 0.890 12 C -0.125 4.125 13 N -0.511 5.511 14 Si 0.687 3.313 15 H -0.193 1.193 16 H -0.210 1.210 17 H -0.181 1.181 18 C -0.003 4.003 19 C -0.100 4.100 20 C -0.127 4.127 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.142 4.142 24 C -0.096 4.096 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.227 0.773 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.204 0.796 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.979 -5.381 -17.354 18.195 hybrid contribution -0.428 0.770 -0.064 0.883 sum -1.407 -4.611 -17.417 18.072 Atomic orbital electron populations 1.21752 0.89970 1.03290 1.04016 1.20088 0.96493 0.81719 0.89380 1.86612 1.27060 1.24056 1.96697 1.20579 0.78937 0.87125 0.83294 1.90675 1.51237 1.16234 1.84472 1.49669 1.62914 1.14812 1.08400 1.24452 1.01218 0.83762 0.95664 1.20337 0.80710 0.92091 0.91670 1.86460 1.21443 1.39754 1.88544 1.21134 1.05011 1.13938 1.17096 0.88980 1.24994 0.97910 0.95381 0.94173 1.69847 1.37883 1.19437 1.23905 0.87325 0.85121 0.78408 0.80437 1.19304 1.20957 1.18089 1.23211 0.99141 1.00258 0.77663 1.20040 0.98354 0.95592 0.96034 1.20922 0.96836 0.99957 0.94993 1.21051 1.00397 0.95347 0.97469 1.21150 0.97618 0.95427 0.99588 1.21124 0.98100 0.99913 0.95085 1.20957 0.99130 0.93557 0.95932 0.90662 0.90681 0.90464 0.77290 0.88873 0.91260 0.79569 0.91824 0.91028 0.88753 0.85736 0.86054 0.86229 0.86020 0.85796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 8.55 37.16 0.32 -1.58 16 2 C 0.17 2.57 1.10 -92.93 -0.10 2.47 16 3 O -0.54 -7.63 10.66 -35.23 -0.38 -8.01 16 4 C 0.51 9.69 6.93 -10.99 -0.08 9.61 16 5 O -0.55 -11.68 15.98 5.56 0.09 -11.59 16 6 N -0.62 -12.27 3.65 -185.01 -0.68 -12.94 16 7 C 0.07 1.43 6.07 -8.36 -0.05 1.38 16 8 C 0.19 4.34 1.10 -91.11 -0.10 4.24 16 9 O -0.55 -12.86 13.33 -35.23 -0.47 -13.33 16 10 C -0.53 -13.59 9.28 -34.44 -0.32 -13.91 16 11 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 12 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 13 N -0.88 -24.23 13.96 55.43 0.77 -23.46 16 14 Si 0.86 18.81 24.42 -169.99 -4.15 14.66 16 15 H -0.27 -5.69 7.06 56.52 0.40 -5.30 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 17 H -0.26 -5.30 5.50 56.52 0.31 -4.99 16 18 C 0.12 2.46 8.02 -8.49 -0.07 2.39 16 19 C -0.10 -1.41 4.55 -104.63 -0.48 -1.89 16 20 C -0.11 -1.35 9.24 -39.58 -0.37 -1.71 16 21 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 22 C -0.12 -1.28 10.05 -39.59 -0.40 -1.68 16 23 C -0.12 -1.46 10.05 -39.59 -0.40 -1.86 16 24 C -0.08 -1.08 8.00 -39.58 -0.32 -1.39 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.07 0.94 8.14 -51.92 -0.42 0.51 16 27 H 0.08 1.03 7.01 -51.93 -0.36 0.67 16 28 H 0.38 4.38 7.76 45.56 0.35 4.73 16 29 H 0.09 1.74 8.10 -51.93 -0.42 1.32 16 30 H 0.07 1.37 7.08 -51.93 -0.37 1.00 16 31 H 0.35 7.87 3.16 45.56 0.14 8.01 16 32 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.09 1.80 8.10 -51.93 -0.42 1.38 16 35 H 0.12 1.31 6.44 -52.49 -0.34 0.97 16 36 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.12 1.73 6.99 -52.49 -0.37 1.37 16 LS Contribution 319.72 15.07 4.82 4.82 Total: -1.00 -30.46 319.72 -6.81 -37.26 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -3.97 Total: 16.29 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.85 Total: -3.70 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.10 Total: -36.40 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.76 Total: -32.94 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.15 Total: 14.66 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.46 -6.81 -37.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325792858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.800 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds