Wall clock time and date at job start Tue Mar 31 2020 06:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42906 * 109.46793 * 2 1 4 4 C 1.50697 * 109.46695 * 119.99322 * 2 1 3 5 5 O 1.21282 * 119.99997 * 96.19046 * 4 2 1 6 6 N 1.34776 * 120.00484 * 276.18627 * 4 2 1 7 7 C 1.47070 * 136.05364 * 359.63309 * 6 4 2 8 8 C 1.53758 * 87.88731 * 152.96235 * 7 6 4 9 9 O 1.42901 * 114.39624 * 272.67733 * 8 7 6 10 10 C 1.50699 * 114.26762 * 139.79181 * 8 7 6 11 11 H 1.07999 * 120.00138 * 266.47636 * 10 8 7 12 12 C 1.37877 * 119.99842 * 86.47575 * 10 8 7 13 13 N 1.31511 * 120.00035 * 179.97438 * 12 10 8 14 14 Si 1.86800 * 120.00074 * 0.02562 * 12 10 8 15 15 H 1.48501 * 109.47422 * 89.99906 * 14 12 10 16 16 H 1.48506 * 109.47098 * 210.00047 * 14 12 10 17 17 H 1.48499 * 109.47167 * 329.99542 * 14 12 10 18 18 C 1.47065 * 136.05984 * 180.02562 * 6 4 2 19 19 C 1.50693 * 109.47494 * 239.99763 * 2 1 3 20 20 C 1.38234 * 120.00023 * 127.26365 * 19 2 1 21 21 C 1.38244 * 119.99552 * 179.76277 * 20 19 2 22 22 C 1.38233 * 120.00095 * 0.51043 * 21 20 19 23 23 C 1.38231 * 119.99987 * 359.74753 * 22 21 20 24 24 C 1.38231 * 120.00191 * 359.97438 * 23 22 21 25 25 H 1.08994 * 109.47738 * 300.00226 * 1 2 3 26 26 H 1.09008 * 109.47115 * 60.00774 * 1 2 3 27 27 H 1.09003 * 109.46874 * 179.97438 * 1 2 3 28 28 H 0.96695 * 113.99879 * 179.97438 * 3 2 1 29 29 H 1.08993 * 113.47177 * 267.69405 * 7 6 4 30 30 H 1.09003 * 113.46814 * 38.13654 * 7 6 4 31 31 H 0.96698 * 114.00221 * 273.58840 * 9 8 7 32 32 H 0.97006 * 120.00415 * 179.97438 * 13 12 10 33 33 H 1.08998 * 113.47231 * 321.86785 * 18 6 4 34 34 H 1.09005 * 113.46809 * 92.30921 * 18 6 4 35 35 H 1.07997 * 119.99927 * 359.97438 * 20 19 2 36 36 H 1.08003 * 119.99647 * 180.22576 * 21 20 19 37 37 H 1.08001 * 120.00009 * 179.71709 * 22 21 20 38 38 H 1.08001 * 120.00094 * 179.97438 * 23 22 21 39 39 H 1.08001 * 120.00049 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0322 -0.7103 1.2305 5 8 2.3411 -1.8816 1.1710 6 7 2.1383 -0.0439 2.3973 7 6 1.8813 1.3282 2.8602 8 6 1.6382 0.7485 4.2634 9 8 0.2939 0.3273 4.5033 10 6 2.2117 1.5772 5.3838 11 1 3.1983 1.3602 5.7657 12 6 1.4768 2.6126 5.9213 13 7 1.9770 3.3355 6.8994 14 14 -0.2300 2.9875 5.2613 15 1 -1.2378 2.2065 6.0227 16 1 -0.5113 4.4379 5.4115 17 1 -0.2979 2.6163 3.8251 18 6 2.5684 -0.3670 3.7660 19 6 2.0324 -0.7104 -1.2303 20 6 2.9462 -0.0903 -2.0618 21 6 3.4108 -0.7441 -3.1878 22 6 2.9535 -2.0136 -3.4880 23 6 2.0357 -2.6315 -2.6594 24 6 1.5755 -1.9801 -1.5304 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 2.9702 1.4237 0.0004 29 1 2.7558 1.9763 2.8039 30 1 0.9936 1.7775 2.4148 31 1 -0.2892 1.0323 4.8164 32 1 1.4601 4.0642 7.2774 33 1 2.2663 -1.3621 4.0925 34 1 3.6240 -0.1654 3.9483 35 1 3.2998 0.9034 -1.8298 36 1 4.1275 -0.2610 -3.8355 37 1 3.3130 -2.5225 -4.3702 38 1 1.6781 -3.6232 -2.8941 39 1 0.8581 -2.4628 -0.8832 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325792858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:19 Heat of formation + Delta-G solvation = -68.422964 kcal Electronic energy + Delta-G solvation = -23876.348328 eV Core-core repulsion = 20364.392231 eV Total energy + Delta-G solvation = -3511.956098 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.96947 -40.63209 -39.09589 -37.79932 -36.36003 -34.56098 -33.41540 -31.75100 -31.08003 -30.07974 -27.60223 -26.94050 -25.32468 -23.43502 -22.93305 -21.62686 -20.45884 -19.55865 -19.03113 -18.34820 -17.93356 -17.30979 -16.78762 -16.52522 -16.01893 -15.60096 -15.44703 -15.36603 -14.99907 -14.68994 -14.47984 -14.37744 -14.09830 -13.81181 -13.77969 -13.48113 -13.34516 -13.10072 -12.87318 -12.66655 -12.50625 -12.39733 -11.95126 -11.92597 -11.77006 -11.33751 -11.08972 -10.75778 -10.37413 -9.82614 -9.77630 -9.66527 -8.44114 -6.55868 0.32378 0.49248 1.23926 1.28772 1.39345 1.40295 1.78500 2.16173 2.73569 2.82741 2.99818 3.18297 3.39885 3.44770 3.81476 3.84822 4.10332 4.17369 4.26135 4.32242 4.44938 4.50515 4.54959 4.59272 4.64701 4.72403 4.73482 4.81755 4.91676 4.98709 5.02375 5.12183 5.26414 5.52321 5.58711 5.59342 6.01149 6.06999 6.37075 6.51804 6.64131 6.71314 6.99181 7.12376 8.71211 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.032112 B = 0.004323 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.747886 B = 6474.716290 C = 6572.538985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.178 3.822 3 O -0.539 6.539 4 C 0.510 3.490 5 O -0.575 6.575 6 N -0.626 5.626 7 C 0.090 3.910 8 C 0.181 3.819 9 O -0.558 6.558 10 C -0.540 4.540 11 H 0.061 0.939 12 C 0.032 3.968 13 N -0.921 5.921 14 Si 0.915 3.085 15 H -0.256 1.256 16 H -0.280 1.280 17 H -0.235 1.235 18 C 0.117 3.883 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.118 4.118 23 C -0.132 4.132 24 C -0.100 4.100 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.390 0.610 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.355 0.645 32 H 0.274 0.726 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.140 0.860 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.140 0.860 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.176 -4.214 -19.991 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.133 3.867 3 O -0.346 6.346 4 C 0.299 3.701 5 O -0.455 6.455 6 N -0.358 5.358 7 C -0.033 4.033 8 C 0.140 3.860 9 O -0.370 6.370 10 C -0.578 4.578 11 H 0.079 0.921 12 C -0.170 4.170 13 N -0.559 5.559 14 Si 0.740 3.260 15 H -0.182 1.182 16 H -0.207 1.207 17 H -0.159 1.159 18 C -0.006 4.006 19 C -0.121 4.121 20 C -0.135 4.135 21 C -0.144 4.144 22 C -0.136 4.136 23 C -0.150 4.150 24 C -0.118 4.118 25 H 0.081 0.919 26 H 0.112 0.888 27 H 0.098 0.902 28 H 0.240 0.760 29 H 0.123 0.877 30 H 0.094 0.906 31 H 0.208 0.792 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.158 0.842 36 H 0.168 0.832 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.449 -5.210 -20.284 20.993 hybrid contribution -0.167 0.627 0.842 1.063 sum -1.616 -4.583 -19.442 20.040 Atomic orbital electron populations 1.21777 0.89348 1.03613 1.04246 1.19956 0.96893 0.81829 0.87974 1.86594 1.28259 1.23247 1.96538 1.21402 0.77941 0.86926 0.83828 1.90654 1.52277 1.17623 1.84972 1.49664 1.63193 1.14646 1.08343 1.24198 1.01988 0.83830 0.93310 1.20378 0.80577 0.92933 0.92100 1.86456 1.21644 1.40253 1.88689 1.21245 1.04027 1.14425 1.18120 0.92128 1.25757 1.01941 0.95055 0.94248 1.69977 1.39826 1.20419 1.25633 0.86376 0.80204 0.78352 0.81044 1.18236 1.20672 1.15900 1.23182 0.99432 0.99253 0.78707 1.20029 0.99886 0.96041 0.96160 1.21190 0.96341 1.00780 0.95229 1.21452 1.00323 0.95437 0.97152 1.21560 0.96543 0.95424 1.00050 1.21415 0.98237 1.00777 0.94553 1.21029 0.99835 0.93967 0.96944 0.91942 0.88769 0.90231 0.75996 0.87673 0.90560 0.79175 0.91611 0.91856 0.87689 0.84206 0.83217 0.83248 0.84170 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 8.55 71.98 0.62 -2.97 16 2 C 0.18 5.19 1.10 -12.29 -0.01 5.17 16 3 O -0.54 -14.05 10.66 -148.98 -1.59 -15.64 16 4 C 0.51 18.84 6.93 87.66 0.61 19.44 16 5 O -0.57 -24.47 15.98 -3.04 -0.05 -24.51 16 6 N -0.63 -24.00 3.65 -858.12 -3.13 -27.13 16 7 C 0.09 3.41 6.07 83.27 0.51 3.91 16 8 C 0.18 8.06 1.10 -11.11 -0.01 8.05 16 9 O -0.56 -25.51 13.33 -148.98 -1.99 -27.49 16 10 C -0.54 -27.91 9.28 25.60 0.24 -27.68 16 11 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 12 C 0.03 1.64 5.47 84.66 0.46 2.11 16 13 N -0.92 -51.99 13.96 21.45 0.30 -51.69 16 14 Si 0.92 38.04 24.42 68.60 1.68 39.72 16 15 H -0.26 -10.23 7.06 99.48 0.70 -9.53 16 16 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 17 H -0.23 -8.91 5.50 99.48 0.55 -8.37 16 18 C 0.12 4.81 8.02 83.19 0.67 5.48 16 19 C -0.12 -3.23 4.55 -19.87 -0.09 -3.32 16 20 C -0.12 -2.60 9.24 22.27 0.21 -2.39 16 21 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 22 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 23 C -0.13 -2.84 10.05 22.27 0.22 -2.61 16 24 C -0.10 -2.66 8.00 22.27 0.18 -2.48 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.09 2.15 8.14 -2.38 -0.02 2.14 16 27 H 0.08 2.07 7.01 -2.39 -0.02 2.05 16 28 H 0.39 8.09 7.76 -74.06 -0.57 7.51 16 29 H 0.11 3.75 8.10 -2.39 -0.02 3.73 16 30 H 0.08 2.82 7.08 -2.39 -0.02 2.80 16 31 H 0.36 15.25 3.16 -74.06 -0.23 15.02 16 32 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 33 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.11 4.04 8.10 -2.38 -0.02 4.02 16 35 H 0.14 2.53 6.44 -2.91 -0.02 2.51 16 36 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 38 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.11 3.13 6.99 -2.91 -0.02 3.11 16 Total: -1.00 -65.81 319.72 -0.63 -66.44 By element: Atomic # 1 Polarization: 41.49 SS G_CDS: 0.11 Total: 41.61 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 4.04 Total: -1.30 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -2.83 Total: -78.82 kcal Atomic # 8 Polarization: -64.03 SS G_CDS: -3.62 Total: -67.65 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 1.68 Total: 39.72 kcal Total: -65.81 -0.63 -66.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325792858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.983 kcal (2) G-P(sol) polarization free energy of solvation -65.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds