Wall clock time and date at job start Tue Mar 31 2020 07:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00006 * 2 1 4 4 C 1.50700 * 109.47046 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99855 * 180.02562 * 4 3 2 6 6 C 1.33015 * 120.00008 * 359.97438 * 4 3 2 7 7 C 1.47068 * 119.99906 * 184.62128 * 6 4 3 8 8 O 1.21631 * 119.99816 * 5.14465 * 7 6 4 9 9 N 1.34772 * 119.99921 * 185.14681 * 7 6 4 10 10 C 1.39906 * 119.99939 * 175.94718 * 9 7 6 11 11 C 1.38946 * 119.99994 * 35.25826 * 10 9 7 12 12 C 1.38001 * 119.99115 * 180.02562 * 11 10 9 13 13 C 1.38907 * 120.00212 * 0.02562 * 12 11 10 14 14 O 1.35785 * 119.99228 * 179.97438 * 13 12 11 15 15 C 1.34808 * 116.99979 * 5.65108 * 14 13 12 16 16 H 1.07994 * 120.00031 * 354.93774 * 15 14 13 17 17 C 1.38630 * 119.99829 * 174.92924 * 15 14 13 18 18 N 1.31578 * 120.00182 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00242 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46570 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47204 * 119.99875 * 19 17 15 22 22 H 1.48500 * 109.47507 * 240.00654 * 19 17 15 23 23 C 1.38915 * 120.01389 * 0.25097 * 13 12 11 24 24 C 1.38001 * 119.99674 * 359.49543 * 23 13 12 25 25 H 1.09001 * 109.47228 * 299.99636 * 1 2 3 26 26 H 1.08995 * 109.47653 * 60.00073 * 1 2 3 27 27 H 1.09007 * 109.46974 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46671 * 59.99839 * 3 2 1 29 29 H 1.09003 * 109.47200 * 300.00172 * 3 2 1 30 30 H 1.08999 * 109.47249 * 243.66087 * 5 4 3 31 31 H 1.09001 * 109.46956 * 3.65891 * 5 4 3 32 32 H 1.08994 * 109.47466 * 123.65681 * 5 4 3 33 33 H 1.07996 * 120.00496 * 4.61416 * 6 4 3 34 34 H 0.96995 * 120.00101 * 355.94402 * 9 7 6 35 35 H 1.08002 * 120.00433 * 0.02562 * 11 10 9 36 36 H 1.07999 * 119.99459 * 179.97438 * 12 11 10 37 37 H 0.96999 * 119.99778 * 179.97438 * 18 17 15 38 38 H 1.07995 * 119.99936 * 179.72249 * 23 13 12 39 39 H 1.07998 * 119.99746 * 180.24836 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.3667 2.4280 -0.0002 6 6 4.0845 -0.0144 -0.0006 7 6 5.5469 -0.1323 0.1014 8 8 6.2261 0.8609 0.2797 9 7 6.1345 -1.3407 -0.0027 10 6 7.5297 -1.4435 0.0093 11 6 8.2829 -0.5838 0.7992 12 6 9.6592 -0.6850 0.8104 13 6 10.2913 -1.6460 0.0317 14 8 11.6455 -1.7451 0.0425 15 6 12.3095 -0.9622 0.9163 16 1 11.7713 -0.2371 1.5086 17 6 13.6831 -1.0880 1.0545 18 7 14.3389 -1.9712 0.3326 19 14 14.6032 -0.0037 2.2658 20 1 13.6431 0.8992 2.9501 21 1 15.2854 -0.8551 3.2732 22 1 15.6123 0.8066 1.5375 23 6 9.5387 -2.5019 -0.7625 24 6 8.1622 -2.4043 -0.7700 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6885 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 4.9479 2.4695 -0.9213 31 1 3.7277 3.3086 0.0662 32 1 5.0422 2.4040 0.8549 33 1 3.4752 -0.9029 -0.0753 34 1 5.5900 -2.1391 -0.0859 35 1 7.7914 0.1637 1.4043 36 1 10.2447 -0.0165 1.4241 37 1 15.3000 -2.0590 0.4291 38 1 10.0306 -3.2460 -1.3713 39 1 7.5768 -3.0724 -1.3844 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326707649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:43 Heat of formation + Delta-G solvation = -58.583073 kcal Electronic energy + Delta-G solvation = -21945.926346 eV Core-core repulsion = 18434.396938 eV Total energy + Delta-G solvation = -3511.529408 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.16165 -38.83073 -38.33660 -36.59678 -34.65478 -33.83265 -32.14590 -30.15707 -28.91363 -28.13692 -27.04919 -25.79211 -25.20062 -22.55287 -21.87303 -20.38931 -19.04241 -17.93667 -17.34018 -17.04968 -16.64102 -16.33617 -15.91674 -15.48144 -14.94316 -14.46976 -14.13666 -14.01415 -13.55585 -13.52469 -13.37317 -13.33196 -12.80443 -12.60701 -12.46890 -12.09095 -11.96703 -11.68718 -11.54188 -11.47646 -11.42383 -11.00294 -10.67477 -10.39061 -10.29572 -9.61716 -9.48607 -9.18463 -9.05925 -8.64463 -8.15017 -6.87042 -6.41026 -3.98343 1.25071 2.21839 2.33787 3.15354 3.17640 3.23338 3.25848 3.41000 3.50494 4.00975 4.51748 4.62726 4.82705 4.85659 4.90801 4.93934 5.02585 5.13206 5.22438 5.30245 5.30969 5.44629 5.72981 5.76817 5.80734 6.00575 6.18536 6.22933 6.28514 6.34225 6.45489 6.74720 6.79597 6.92655 7.07970 7.16543 7.35740 7.48813 7.79350 7.86457 8.04580 8.49715 9.05031 9.75182 10.77119 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.033868 B = 0.002721 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.536086 B =10287.772191 C =10919.431061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.093 3.907 4 C -0.053 4.053 5 C -0.115 4.115 6 C -0.200 4.200 7 C 0.535 3.465 8 O -0.529 6.529 9 N -0.656 5.656 10 C 0.036 3.964 11 C -0.064 4.064 12 C -0.221 4.221 13 C 0.146 3.854 14 O -0.178 6.178 15 C -0.389 4.389 16 H 0.093 0.907 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.941 3.059 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.178 4.178 24 C -0.094 4.094 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.136 0.864 34 H 0.402 0.598 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.269 0.731 38 H 0.121 0.879 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.981 4.175 -0.322 25.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.017 3.983 4 C -0.055 4.055 5 C -0.171 4.171 6 C -0.221 4.221 7 C 0.326 3.674 8 O -0.408 6.408 9 N -0.300 5.300 10 C -0.057 4.057 11 C -0.084 4.084 12 C -0.241 4.241 13 C 0.092 3.908 14 O -0.082 6.082 15 C -0.465 4.465 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.499 5.499 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.198 4.198 24 C -0.114 4.114 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.153 0.847 34 H 0.237 0.763 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.079 0.921 38 H 0.139 0.861 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -24.002 4.504 -0.367 24.424 hybrid contribution -0.144 0.256 0.503 0.583 sum -24.146 4.760 0.137 24.612 Atomic orbital electron populations 1.22766 0.80560 1.03082 1.00094 1.87875 1.19971 1.27388 1.95513 1.21446 0.90468 0.85201 1.01217 1.22333 0.93648 0.96096 0.93410 1.21005 0.98348 0.92610 1.05146 1.22367 0.93220 0.99161 1.07357 1.18626 0.88397 0.83055 0.77366 1.90761 1.65332 1.36342 1.48339 1.43119 1.05669 1.08754 1.72458 1.17274 0.81488 1.03100 1.03792 1.20854 0.93093 0.97853 0.96582 1.21109 0.94191 1.02883 1.05877 1.19414 0.85082 0.92858 0.93462 1.83974 1.12217 1.58101 1.53865 1.21380 0.90234 1.16566 1.18339 0.88994 1.25284 0.95708 0.97518 0.98100 1.70059 1.08727 1.32824 1.38285 0.85647 0.79422 0.79089 0.79291 1.19066 1.20181 1.20173 1.19991 0.92187 1.02704 1.04930 1.20375 0.93744 0.99004 0.98269 0.93894 0.93913 0.89352 0.91164 0.91367 0.90166 0.93078 0.88449 0.84663 0.76350 0.85717 0.85248 0.92134 0.86096 0.86749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.39 9.13 -35.23 -0.32 -3.72 16 3 C 0.09 0.73 6.27 36.01 0.23 0.95 16 4 C -0.05 -0.56 6.11 -101.16 -0.62 -1.18 16 5 C -0.12 -1.25 8.40 36.00 0.30 -0.95 16 6 C -0.20 -2.37 9.37 -37.82 -0.35 -2.72 16 7 C 0.54 8.10 7.54 -12.68 -0.10 8.00 16 8 O -0.53 -9.56 10.62 5.25 0.06 -9.51 16 9 N -0.66 -9.66 5.33 -10.90 -0.06 -9.71 16 10 C 0.04 0.67 6.30 -83.65 -0.53 0.14 16 11 C -0.06 -1.33 8.68 -39.41 -0.34 -1.67 16 12 C -0.22 -5.11 9.16 -39.42 -0.36 -5.47 16 13 C 0.15 3.62 6.65 -39.08 -0.26 3.36 16 14 O -0.18 -5.17 9.75 0.00 0.00 -5.17 16 15 C -0.39 -11.09 9.48 30.88 0.29 -10.80 16 16 H 0.09 2.46 5.20 -52.49 -0.27 2.18 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 18 N -0.86 -25.64 13.67 55.48 0.76 -24.89 16 19 Si 0.94 20.97 29.55 -169.99 -5.02 15.94 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 C -0.18 -3.81 9.99 -39.42 -0.39 -4.20 16 24 C -0.09 -1.70 9.96 -39.41 -0.39 -2.09 16 25 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.98 7.83 -51.93 -0.41 0.57 16 31 H 0.05 0.41 8.00 -51.93 -0.42 0.00 16 32 H 0.10 1.27 6.54 -51.93 -0.34 0.93 16 33 H 0.14 1.40 6.90 -52.49 -0.36 1.04 16 34 H 0.40 4.47 8.80 -40.82 -0.36 4.11 16 35 H 0.13 2.55 6.25 -52.49 -0.33 2.22 16 36 H 0.13 3.01 5.63 -52.49 -0.30 2.71 16 37 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 334.07 15.07 5.03 5.03 Total: -1.00 -33.49 334.07 -5.93 -39.42 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -4.87 Total: 6.97 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -1.51 Total: -14.38 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.70 Total: -34.60 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.27 Total: -18.39 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.49 -5.93 -39.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326707649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.161 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds