Wall clock time and date at job start Tue Mar 31 2020 07:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00006 * 2 1 4 4 C 1.50700 * 109.47046 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99855 * 180.02562 * 4 3 2 6 6 C 1.33015 * 120.00008 * 359.97438 * 4 3 2 7 7 C 1.47068 * 119.99906 * 184.62128 * 6 4 3 8 8 O 1.21631 * 119.99816 * 5.14465 * 7 6 4 9 9 N 1.34772 * 119.99921 * 185.14681 * 7 6 4 10 10 C 1.39906 * 119.99939 * 175.94718 * 9 7 6 11 11 C 1.38946 * 119.99994 * 35.25826 * 10 9 7 12 12 C 1.38001 * 119.99115 * 180.02562 * 11 10 9 13 13 C 1.38907 * 120.00212 * 0.02562 * 12 11 10 14 14 O 1.35785 * 119.99228 * 179.97438 * 13 12 11 15 15 C 1.34808 * 116.99979 * 5.65108 * 14 13 12 16 16 H 1.07994 * 120.00031 * 354.93774 * 15 14 13 17 17 C 1.38630 * 119.99829 * 174.92924 * 15 14 13 18 18 N 1.31578 * 120.00182 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00242 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46570 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47204 * 119.99875 * 19 17 15 22 22 H 1.48500 * 109.47507 * 240.00654 * 19 17 15 23 23 C 1.38915 * 120.01389 * 0.25097 * 13 12 11 24 24 C 1.38001 * 119.99674 * 359.49543 * 23 13 12 25 25 H 1.09001 * 109.47228 * 299.99636 * 1 2 3 26 26 H 1.08995 * 109.47653 * 60.00073 * 1 2 3 27 27 H 1.09007 * 109.46974 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46671 * 59.99839 * 3 2 1 29 29 H 1.09003 * 109.47200 * 300.00172 * 3 2 1 30 30 H 1.08999 * 109.47249 * 243.66087 * 5 4 3 31 31 H 1.09001 * 109.46956 * 3.65891 * 5 4 3 32 32 H 1.08994 * 109.47466 * 123.65681 * 5 4 3 33 33 H 1.07996 * 120.00496 * 4.61416 * 6 4 3 34 34 H 0.96995 * 120.00101 * 355.94402 * 9 7 6 35 35 H 1.08002 * 120.00433 * 0.02562 * 11 10 9 36 36 H 1.07999 * 119.99459 * 179.97438 * 12 11 10 37 37 H 0.96999 * 119.99778 * 179.97438 * 18 17 15 38 38 H 1.07995 * 119.99936 * 179.72249 * 23 13 12 39 39 H 1.07998 * 119.99746 * 180.24836 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.3667 2.4280 -0.0002 6 6 4.0845 -0.0144 -0.0006 7 6 5.5469 -0.1323 0.1014 8 8 6.2261 0.8609 0.2797 9 7 6.1345 -1.3407 -0.0027 10 6 7.5297 -1.4435 0.0093 11 6 8.2829 -0.5838 0.7992 12 6 9.6592 -0.6850 0.8104 13 6 10.2913 -1.6460 0.0317 14 8 11.6455 -1.7451 0.0425 15 6 12.3095 -0.9622 0.9163 16 1 11.7713 -0.2371 1.5086 17 6 13.6831 -1.0880 1.0545 18 7 14.3389 -1.9712 0.3326 19 14 14.6032 -0.0037 2.2658 20 1 13.6431 0.8992 2.9501 21 1 15.2854 -0.8551 3.2732 22 1 15.6123 0.8066 1.5375 23 6 9.5387 -2.5019 -0.7625 24 6 8.1622 -2.4043 -0.7700 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6885 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 4.9479 2.4695 -0.9213 31 1 3.7277 3.3086 0.0662 32 1 5.0422 2.4040 0.8549 33 1 3.4752 -0.9029 -0.0753 34 1 5.5900 -2.1391 -0.0859 35 1 7.7914 0.1637 1.4043 36 1 10.2447 -0.0165 1.4241 37 1 15.3000 -2.0590 0.4291 38 1 10.0306 -3.2460 -1.3713 39 1 7.5768 -3.0724 -1.3844 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326707649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:43 Heat of formation + Delta-G solvation = -81.527430 kcal Electronic energy + Delta-G solvation = -21946.921288 eV Core-core repulsion = 18434.396938 eV Total energy + Delta-G solvation = -3512.524350 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.52352 -40.42014 -39.12835 -38.19638 -35.69194 -35.19294 -34.16641 -31.86406 -30.26696 -28.72251 -28.36004 -27.18240 -26.31370 -24.08566 -23.46016 -21.81237 -20.31168 -19.67553 -18.93297 -18.17078 -17.88169 -16.96330 -16.87139 -16.46298 -16.30965 -16.20414 -15.62401 -15.49089 -15.34432 -14.94931 -14.67260 -14.26153 -14.17234 -13.94261 -13.57118 -13.31230 -13.20426 -13.11583 -12.86221 -12.70837 -12.66769 -12.41556 -12.11570 -12.11274 -11.39434 -11.06665 -10.84224 -10.62719 -10.44372 -10.03366 -9.83160 -8.58841 -8.47109 -6.13806 0.22105 0.53340 0.71354 1.34775 1.42493 1.52953 2.17173 2.22402 2.28417 2.72413 2.83213 3.15179 3.51240 3.67837 4.07439 4.08100 4.12354 4.26422 4.40114 4.40698 4.48268 4.56506 4.63336 4.66257 4.69325 4.76742 4.85169 4.93411 5.06975 5.12240 5.16234 5.35838 5.41940 5.45262 5.55472 5.62819 5.70105 6.02285 6.17380 6.22248 6.61325 6.97516 7.29032 7.77113 8.75857 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.033868 B = 0.002721 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.536086 B =10287.772191 C =10919.431061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.093 3.907 4 C -0.038 4.038 5 C -0.115 4.115 6 C -0.214 4.214 7 C 0.532 3.468 8 O -0.563 6.563 9 N -0.648 5.648 10 C 0.063 3.937 11 C -0.075 4.075 12 C -0.228 4.228 13 C 0.106 3.894 14 O -0.228 6.228 15 C -0.413 4.413 16 H 0.097 0.903 17 C -0.022 4.022 18 N -0.918 5.918 19 Si 1.017 2.983 20 H -0.256 1.256 21 H -0.266 1.266 22 H -0.267 1.267 23 C -0.180 4.180 24 C -0.079 4.079 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.154 0.846 34 H 0.424 0.576 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.273 0.727 38 H 0.129 0.871 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.684 4.705 -0.245 29.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.018 3.982 4 C -0.040 4.040 5 C -0.171 4.171 6 C -0.235 4.235 7 C 0.325 3.675 8 O -0.444 6.444 9 N -0.294 5.294 10 C -0.031 4.031 11 C -0.095 4.095 12 C -0.248 4.248 13 C 0.055 3.945 14 O -0.134 6.134 15 C -0.489 4.489 16 H 0.114 0.886 17 C -0.219 4.219 18 N -0.556 5.556 19 Si 0.837 3.163 20 H -0.179 1.179 21 H -0.191 1.191 22 H -0.192 1.192 23 C -0.200 4.200 24 C -0.099 4.099 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.172 0.828 34 H 0.262 0.738 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.082 0.918 38 H 0.147 0.853 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -27.805 5.015 -0.298 28.255 hybrid contribution 0.563 0.128 0.402 0.704 sum -27.241 5.142 0.104 27.723 Atomic orbital electron populations 1.22943 0.78907 1.03998 1.01145 1.87826 1.21764 1.27762 1.95754 1.21534 0.88158 0.85505 1.03044 1.22666 0.95533 0.95288 0.90469 1.20941 0.98508 0.94448 1.03233 1.22263 0.90855 1.00555 1.09835 1.19268 0.89802 0.82387 0.76076 1.90767 1.66423 1.37480 1.49734 1.43084 1.03999 1.10015 1.72314 1.17430 0.83439 1.01064 1.01195 1.20929 0.92223 0.98839 0.97525 1.21099 0.95254 1.02624 1.05840 1.19929 0.84343 0.94719 0.95482 1.83937 1.14168 1.59755 1.55556 1.21804 0.91055 1.17127 1.18895 0.88564 1.26547 0.96254 0.99065 1.00070 1.70187 1.09240 1.35381 1.40837 0.84547 0.77897 0.77178 0.76688 1.17941 1.19061 1.19182 1.20320 0.93554 1.02036 1.04055 1.20787 0.92551 0.98953 0.97619 0.92890 0.92792 0.88640 0.89240 0.89276 0.91745 0.89975 0.90805 0.82843 0.73778 0.85546 0.86535 0.91784 0.85338 0.81782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.41 -5.72 9.13 -148.98 -1.36 -7.08 16 3 C 0.09 1.10 6.27 71.24 0.45 1.55 16 4 C -0.04 -0.69 6.11 -17.61 -0.11 -0.80 16 5 C -0.12 -2.31 8.40 71.24 0.60 -1.71 16 6 C -0.21 -4.50 9.37 23.42 0.22 -4.28 16 7 C 0.53 15.11 7.54 86.56 0.65 15.76 16 8 O -0.56 -20.04 10.62 -4.13 -0.04 -20.08 16 9 N -0.65 -17.27 5.33 -306.65 -1.63 -18.91 16 10 C 0.06 2.19 6.30 38.19 0.24 2.43 16 11 C -0.08 -3.12 8.68 22.38 0.19 -2.93 16 12 C -0.23 -10.98 9.16 22.37 0.20 -10.77 16 13 C 0.11 5.47 6.65 22.59 0.15 5.62 16 14 O -0.23 -14.02 9.75 -22.90 -0.22 -14.24 16 15 C -0.41 -24.85 9.48 67.91 0.64 -24.21 16 16 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 17 C -0.02 -1.27 5.49 84.82 0.47 -0.80 16 18 N -0.92 -57.11 13.67 21.61 0.30 -56.82 16 19 Si 1.02 44.28 29.55 68.60 2.03 46.31 16 20 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 C -0.18 -7.67 9.99 22.38 0.22 -7.45 16 24 C -0.08 -2.67 9.96 22.38 0.22 -2.45 16 25 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 26 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.10 0.55 8.14 -2.38 -0.02 0.54 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 1.51 7.83 -2.39 -0.02 1.50 16 31 H 0.08 1.10 8.00 -2.39 -0.02 1.08 16 32 H 0.07 1.88 6.54 -2.39 -0.02 1.87 16 33 H 0.15 2.66 6.90 -2.91 -0.02 2.64 16 34 H 0.42 7.78 8.80 -92.71 -0.82 6.96 16 35 H 0.13 5.21 6.25 -2.91 -0.02 5.19 16 36 H 0.12 5.77 5.63 -2.91 -0.02 5.75 16 37 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 38 H 0.13 5.21 8.06 -2.91 -0.02 5.19 16 39 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -77.83 334.07 4.73 -73.10 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.27 Total: 26.30 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 5.40 Total: -28.58 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -1.34 Total: -75.72 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -1.63 Total: -41.40 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -77.83 4.73 -73.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326707649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.431 kcal (2) G-P(sol) polarization free energy of solvation -77.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds